-
1
-
-
78650909427
-
Limitations of next-generation genome sequence assembly
-
Alkan C, Sajjadian S, Eichler EE (2011) Limitations of next-generation genome sequence assembly. Nature Methods, 8, 61-65.
-
(2011)
Nature Methods
, vol.8
, pp. 61-65
-
-
Alkan, C.1
Sajjadian, S.2
Eichler, E.E.3
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. Journal of Molecular Biology, 215, 403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
84857508494
-
Genomic toolboxes for conservation biologists
-
Angeloni F, Wagemaker N, Vergeer P, Ouborg J (2011) Genomic toolboxes for conservation biologists. Evolutionary Applications, 5, 130-143.
-
(2011)
Evolutionary Applications
, vol.5
, pp. 130-143
-
-
Angeloni, F.1
Wagemaker, N.2
Vergeer, P.3
Ouborg, J.4
-
4
-
-
65249087333
-
New generation sequences as a tool for genotyping of highly polymorphic multilocus MHC system
-
Babik W, Taberlet P, Ejsmond MJ, Radwan J (2009) New generation sequences as a tool for genotyping of highly polymorphic multilocus MHC system. Molecular Ecology Resources, 9, 713-719.
-
(2009)
Molecular Ecology Resources
, vol.9
, pp. 713-719
-
-
Babik, W.1
Taberlet, P.2
Ejsmond, M.J.3
Radwan, J.4
-
5
-
-
9444291355
-
Olfactory receptors and odor coding in mammals
-
Buck LB (2004) Olfactory receptors and odor coding in mammals. Nutrition Reviews, 62, S184-S188.
-
(2004)
Nutrition Reviews
, vol.62
-
-
Buck, L.B.1
-
6
-
-
78650453707
-
Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
-
Claesson M, Wang Q, O'Sullivan O et al. (2010) Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions. Nucleic Acids Research, 38, e200.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Claesson, M.1
Wang, Q.2
O'Sullivan, O.3
-
8
-
-
78649969759
-
De novo transcriptome sequencing in Anopheles funestus using Illumina RNA-Seq technology
-
Crawford JE, Guelbeogo WM, Sanou A et al. (2011) De novo transcriptome sequencing in Anopheles funestus using Illumina RNA-Seq technology. PLoS ONE, 5, e14202.
-
(2011)
PLoS ONE
, vol.5
-
-
Crawford, J.E.1
Guelbeogo, W.M.2
Sanou, A.3
-
9
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR (1998) Profile hidden Markov models. Bioinformatics, 14, 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
10
-
-
79959300621
-
Applications of next generation sequencing in molecular ecology of non-model organisms
-
Ekblom R, Galindo J (2011) Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity, 107, 1-15.
-
(2011)
Heredity
, vol.107
, pp. 1-15
-
-
Ekblom, R.1
Galindo, J.2
-
12
-
-
0029588690
-
Two classes of olfactory receptors in Xenophus laevis
-
Freitag J, Krieger J, Strotmann J, Breer H (1995) Two classes of olfactory receptors in Xenophus laevis. Neuron, 15, 1383-1392.
-
(1995)
Neuron
, vol.15
, pp. 1383-1392
-
-
Freitag, J.1
Krieger, J.2
Strotmann, J.3
Breer, H.4
-
14
-
-
0037452879
-
Human specific loss of olfactory receptor genes
-
Gilad Y, Man O, Paabo S, Lancet D (2003) Human specific loss of olfactory receptor genes. Proceedings of the National Academy of Sciences of the United States of America, 100, 3324-3327.
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, pp. 3324-3327
-
-
Gilad, Y.1
Man, O.2
Paabo, S.3
Lancet, D.4
-
15
-
-
80051688000
-
Field guide to next generation DNA sequencers
-
Glenn TC (2011) Field guide to next generation DNA sequencers. Molecular Ecology Resources, 11, 759-769.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 759-769
-
-
Glenn, T.C.1
-
16
-
-
0035001936
-
The complete human olfactory receptor subgenome
-
Glusman G, Yanai I, Rubin I, Lancet D (2001) The complete human olfactory receptor subgenome. Genome Research, 11, 685-702.
-
(2001)
Genome Research
, vol.11
, pp. 685-702
-
-
Glusman, G.1
Yanai, I.2
Rubin, I.3
Lancet, D.4
-
17
-
-
79960638320
-
A biologist's guide to de novo genome assembly using next-generation sequence data: a test with fungal genomes
-
Haridas S, Breuill C, Bohlmann J, Hsiang T (2011) A biologist's guide to de novo genome assembly using next-generation sequence data: a test with fungal genomes. Journal of Microbiological Methods, 86, 368-375.
-
(2011)
Journal of Microbiological Methods
, vol.86
, pp. 368-375
-
-
Haridas, S.1
Breuill, C.2
Bohlmann, J.3
Hsiang, T.4
-
18
-
-
74949117308
-
Ecological adaptation determines functional mammalian olfactory subgenomes
-
Hayden S, Bekaert M, Crider TA, Mariani S, Murphy WJ, Teeling EC (2010) Ecological adaptation determines functional mammalian olfactory subgenomes. Genome Research, 20, 1-9.
-
(2010)
Genome Research
, vol.20
, pp. 1-9
-
-
Hayden, S.1
Bekaert, M.2
Crider, T.A.3
Mariani, S.4
Murphy, W.J.5
Teeling, E.C.6
-
19
-
-
44849092474
-
The new paradigm of flow cell sequencing
-
Holt RA, Jones SJ (2008) The new paradigm of flow cell sequencing. Genome Research, 18, 839-846.
-
(2008)
Genome Research
, vol.18
, pp. 839-846
-
-
Holt, R.A.1
Jones, S.J.2
-
20
-
-
0031006441
-
A comparison of goodness-of-fit tests for the logical regression model
-
Hosmer DW, Hosmer T, Le Cessie S, Lemeshow S (1997) A comparison of goodness-of-fit tests for the logical regression model. Statistics in Medicine, 16, 965-980.
-
(1997)
Statistics in Medicine
, vol.16
, pp. 965-980
-
-
Hosmer, D.W.1
Hosmer, T.2
Le Cessie, S.3
Lemeshow, S.4
-
21
-
-
84857145150
-
ART: a next-generation sequencing read simulator
-
Huang W, Li L, Myers JR, Marth GT (2012) ART: a next-generation sequencing read simulator. Bioinformatics, 28, 593-594.
-
(2012)
Bioinformatics
, vol.28
, pp. 593-594
-
-
Huang, W.1
Li, L.2
Myers, J.R.3
Marth, G.T.4
-
22
-
-
36849073678
-
Sequencing breakthroughs for genomic ecology and evolutionary biology
-
Hudson ME (2008) Sequencing breakthroughs for genomic ecology and evolutionary biology. Molecular Ecology Resources, 8, 3-17.
-
(2008)
Molecular Ecology Resources
, vol.8
, pp. 3-17
-
-
Hudson, M.E.1
-
23
-
-
0024440685
-
Evolution of the major histocompatibility complex: independent origin of nonclassical class I genes in different groups of mammals
-
Hughes AL, Nei M (1989) Evolution of the major histocompatibility complex: independent origin of nonclassical class I genes in different groups of mammals. Molecular Biology and Evolution, 6, 559-579.
-
(1989)
Molecular Biology and Evolution
, vol.6
, pp. 559-579
-
-
Hughes, A.L.1
Nei, M.2
-
24
-
-
12944320844
-
Comparative genomics of major histocompatibility complexes
-
Kelley J, Walter L, Trowsdale J (2005) Comparative genomics of major histocompatibility complexes. Immunogenetics, 56, 683-695.
-
(2005)
Immunogenetics
, vol.56
, pp. 683-695
-
-
Kelley, J.1
Walter, L.2
Trowsdale, J.3
-
25
-
-
77952734936
-
High-throughput DNA sequencing - concepts and limitations
-
Kircher M, Kelso J (2010) High-throughput DNA sequencing - concepts and limitations. BioEssays, 32, 524-536.
-
(2010)
BioEssays
, vol.32
, pp. 524-536
-
-
Kircher, M.1
Kelso, J.2
-
26
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology, 10, R25.
-
(2009)
Genome Biology
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
27
-
-
40049104732
-
SOAP: short oligonucleotide alignment program
-
Li R, Li Y, Kristiansen K, Wang J (2008) SOAP: short oligonucleotide alignment program. Bioinformatics, 24, 713-714.
-
(2008)
Bioinformatics
, vol.24
, pp. 713-714
-
-
Li, R.1
Li, Y.2
Kristiansen, K.3
Wang, J.4
-
28
-
-
68549104404
-
The Sequence alignment/map (SAM) format and SAMtools
-
1000 Genome Project Data Processing Subgroup.
-
Li H, Handsaker B, Wysoker A et al., 1000 Genome Project Data Processing Subgroup (2009) The Sequence alignment/map (SAM) format and SAMtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
-
29
-
-
75149155568
-
The sequences and de novo assembly of the giant panda genome
-
Li R, Fan W, Tian G et al. (2010) The sequences and de novo assembly of the giant panda genome. Nature, 463, 311-316.
-
(2010)
Nature
, vol.463
, pp. 311-316
-
-
Li, R.1
Fan, W.2
Tian, G.3
-
30
-
-
79960411408
-
Comparative studies of de novo tools for next-generation technologies
-
Lin Y, Li J, Shen H, Zhang L, Papasian CJ, Deng HW (2011) Comparative studies of de novo tools for next-generation technologies. Bioinformatics, 27, 2031-2037.
-
(2011)
Bioinformatics
, vol.27
, pp. 2031-2037
-
-
Lin, Y.1
Li, J.2
Shen, H.3
Zhang, L.4
Papasian, C.J.5
Deng, H.W.6
-
31
-
-
28644447707
-
Genome sequence, comparative analysis and haplotype structure of the domestic dog
-
Lindblad-Toh K, Wade CM, Mikkelsen TS et al. (2005) Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature, 438, 803-819.
-
(2005)
Nature
, vol.438
, pp. 803-819
-
-
Lindblad-Toh, K.1
Wade, C.M.2
Mikkelsen, T.S.3
-
32
-
-
80054973803
-
A high-resolution map of human evolutionary constraint using 29 mammals
-
Lindblad-Toh K, Garber M, Zuk O et al. (2011) A high-resolution map of human evolutionary constraint using 29 mammals. Nature, 478, 476-482.
-
(2011)
Nature
, vol.478
, pp. 476-482
-
-
Lindblad-Toh, K.1
Garber, M.2
Zuk, O.3
-
33
-
-
81255207159
-
An efficient simulator of 454 data using configurable statistical models
-
Lysholm F, Andersson B, Person B (2011) An efficient simulator of 454 data using configurable statistical models. BMC Research Notes, 4, 449.
-
(2011)
BMC Research Notes
, vol.4
, pp. 449
-
-
Lysholm, F.1
Andersson, B.2
Person, B.3
-
35
-
-
79961074078
-
Dynamic evolution of base composition: causes and consequences in avian phylogenomics
-
Nabholz B, Kunstner A, Wang R, Jarvis ED, Ellegren H (2011) Dynamic evolution of base composition: causes and consequences in avian phylogenomics. Molecular Biology and Evolution, 28, 2197-2210.
-
(2011)
Molecular Biology and Evolution
, vol.28
, pp. 2197-2210
-
-
Nabholz, B.1
Kunstner, A.2
Wang, R.3
Jarvis, E.D.4
Ellegren, H.5
-
36
-
-
79955724657
-
Comparing de novo genome assembly: the long and short of it
-
Narzisi G, Mishra B (2011) Comparing de novo genome assembly: the long and short of it. PLoS ONE, 6, e19175.
-
(2011)
PLoS ONE
, vol.6
-
-
Narzisi, G.1
Mishra, B.2
-
37
-
-
84855854928
-
Next-generation' sequencing becomes 'now-generation
-
Neafsey DE, Haas BJ (2011) Next-generation' sequencing becomes 'now-generation. Genome Biology, 12, 303.
-
(2011)
Genome Biology
, vol.12
, pp. 303
-
-
Neafsey, D.E.1
Haas, B.J.2
-
38
-
-
27944477670
-
Concerted and birth-and-death evolution of multigene families
-
Nei M, Rooney AP (2005) Concerted and birth-and-death evolution of multigene families. Annual Review of Genetics, 39, 121-152.
-
(2005)
Annual Review of Genetics
, vol.39
, pp. 121-152
-
-
Nei, M.1
Rooney, A.P.2
-
39
-
-
1242338890
-
The canine olfactory subgenome
-
Olender T, Fuchs T, Linhart C et al. (2004) The canine olfactory subgenome. Genomics, 83, 361-372.
-
(2004)
Genomics
, vol.83
, pp. 361-372
-
-
Olender, T.1
Fuchs, T.2
Linhart, C.3
-
40
-
-
0028280685
-
Divergent evolution and evolution by the birth-and-death process in the immunoglobulin VH gene family
-
Ota T, Nei M (1994) Divergent evolution and evolution by the birth-and-death process in the immunoglobulin VH gene family. Molecular Biology and Evolution, 11, 469-482.
-
(1994)
Molecular Biology and Evolution
, vol.11
, pp. 469-482
-
-
Ota, T.1
Nei, M.2
-
43
-
-
39649084637
-
Bioinformatics challenges of new sequencing technology
-
Pop M, Salzberg SL (2008) Bioinformatics challenges of new sequencing technology. Trends in Genetics, 24, 133-141.
-
(2008)
Trends in Genetics
, vol.24
, pp. 133-141
-
-
Pop, M.1
Salzberg, S.L.2
-
44
-
-
0034693799
-
The protein kinase family of the human genome
-
Robinson DR, Wu YM, Lin SF (2000) The protein kinase family of the human genome. Oncogene, 19, 5548-5557.
-
(2000)
Oncogene
, vol.19
, pp. 5548-5557
-
-
Robinson, D.R.1
Wu, Y.M.2
Lin, S.F.3
-
45
-
-
0031883174
-
Distribution of olfactory receptor genes in the human genome
-
Rouquier S, Taviaux S, Trask BJ et al. (1998) Distribution of olfactory receptor genes in the human genome. Nature Genetics, 18, 243-250.
-
(1998)
Nature Genetics
, vol.18
, pp. 243-250
-
-
Rouquier, S.1
Taviaux, S.2
Trask, B.J.3
-
46
-
-
84856496549
-
Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
-
Scholz MB, Lo C, Chain P (2011) Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis. Current Opinion in Biotechnology, 23, 9-15.
-
(2011)
Current Opinion in Biotechnology
, vol.23
, pp. 9-15
-
-
Scholz, M.B.1
Lo, C.2
Chain, P.3
-
48
-
-
78649294100
-
Optimization of de novo transcriptome assembly from next-generation sequencing data
-
Surget-Groba Y, Montoya-Burgos J (2010) Optimization of de novo transcriptome assembly from next-generation sequencing data. Genome Research, 20, 1432-1440.
-
(2010)
Genome Research
, vol.20
, pp. 1432-1440
-
-
Surget-Groba, Y.1
Montoya-Burgos, J.2
-
49
-
-
77951892543
-
Next generation molecular ecology
-
Tautz D, Ellegren H, Weigel D (2010) Next generation molecular ecology. Molecular Ecology, 19(Suppl. 1), 1-3.
-
(2010)
Molecular Ecology
, vol.19
, Issue.SUPPL. 1
, pp. 1-3
-
-
Tautz, D.1
Ellegren, H.2
Weigel, D.3
-
51
-
-
78650653530
-
454 sequencing reveals extreme complexity of the class II Major Histocompatability Complex in the collared flycatcher
-
Zagalska-Neubauer M, Babik W, Stuglik M, Gustafsson L, Cichon M, Radwan J (2010) 454 sequencing reveals extreme complexity of the class II Major Histocompatability Complex in the collared flycatcher. BMC Evolutionary Biology, 10, 395.
-
(2010)
BMC Evolutionary Biology
, vol.10
, pp. 395
-
-
Zagalska-Neubauer, M.1
Babik, W.2
Stuglik, M.3
Gustafsson, L.4
Cichon, M.5
Radwan, J.6
-
52
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18, 821-829.
-
(2008)
Genome Research
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
53
-
-
0036163689
-
The olfactory receptor gene superfamily of the mouse
-
Zhang X, Firestein S (2002) The olfactory receptor gene superfamily of the mouse. Nature Neuroscience, 5, 124-133.
-
(2002)
Nature Neuroscience
, vol.5
, pp. 124-133
-
-
Zhang, X.1
Firestein, S.2
-
55
-
-
0035237870
-
The human olfactory receptor repertoire
-
Zozulya S, Echeverri F, Nguyen T (2001) The human olfactory receptor repertoire. Genome Biology, 2, 0018.1-0018.12.
-
(2001)
Genome Biology
, vol.2
, pp. 00181-001812
-
-
Zozulya, S.1
Echeverri, F.2
Nguyen, T.3
|