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Volumn 56, Issue 5, 2013, Pages 366-372

Quantification of the 16S-23S rRNA internal transcribed spacers of Burkholderia xenovorans strain LB400 using real-time PCR in soil samples

Author keywords

16S 23S rRNA internal transcribed spacers (ITS); Bioaugmentation; Burkholderia xenovorans LB400; Polychlorinated biphenyls (PCBs); Real time PCR; Soil

Indexed keywords

MICROORGANISMS; ORGANIC POLLUTANTS; POLYCHLORINATED BIPHENYLS; POLYMERASE CHAIN REACTION; RNA; SOIL POLLUTION; SOIL SURVEYS; STRAIN; TRANSCRIPTION;

EID: 84876302636     PISSN: 02668254     EISSN: 1472765X     Source Type: Journal    
DOI: 10.1111/lam.12057     Document Type: Article
Times cited : (3)

References (38)
  • 2
    • 33746583201 scopus 로고    scopus 로고
    • Potential pitfalls in the quantitative molecular detection of Escherichia coli O157:H7 in environmental matrices
    • Artz, R.R.E., Avery, L.M., Jones, D.L. and Killham, K. (2006) Potential pitfalls in the quantitative molecular detection of Escherichia coli O157:H7 in environmental matrices. Can J Microbiol 52, 482-488.
    • (2006) Can J Microbiol , vol.52 , pp. 482-488
    • Artz, R.R.E.1    Avery, L.M.2    Jones, D.L.3    Killham, K.4
  • 3
    • 8744247428 scopus 로고    scopus 로고
    • Real-time PCR for detection and quantification of the protistan parasite Perkinsus marinus in environmental waters
    • Audemard, C., Reece, K.S. and Burreson, E.M. (2004) Real-time PCR for detection and quantification of the protistan parasite Perkinsus marinus in environmental waters. Appl Environ Microbiol 70, 6611-6618.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 6611-6618
    • Audemard, C.1    Reece, K.S.2    Burreson, E.M.3
  • 4
    • 0034516787 scopus 로고    scopus 로고
    • Dissipation of 3-6 ring polycyclic aromatic hydrocarbons in the rhizosphere of ryegrass
    • Binet, P., Portal, J.-M. and Leyval, C. (2000) Dissipation of 3-6 ring polycyclic aromatic hydrocarbons in the rhizosphere of ryegrass. Soil Biol Biochem 32, 2011-2017.
    • (2000) Soil Biol Biochem , vol.32 , pp. 2011-2017
    • Binet, P.1    Portal, J.-M.2    Leyval, C.3
  • 5
    • 0034802240 scopus 로고    scopus 로고
    • Polyhydroxyalkanoate-accumulating bacterium isolated from a soil of a sugar-cane plantation in Brazil
    • Brämer, C.O., Vandamme, P., da Silva, L.F., Gomez, J.G.C. and Steinbüchel, A. (2001) Polyhydroxyalkanoate-accumulating bacterium isolated from a soil of a sugar-cane plantation in Brazil. Int J Syst Evol Micr 51, 1709-1713.
    • (2001) Int J Syst Evol Micr , vol.51 , pp. 1709-1713
    • Brämer, C.O.1    Vandamme, P.2    da Silva, L.F.3    Gomez, J.G.C.4    Steinbüchel, A.5
  • 6
    • 42249095068 scopus 로고    scopus 로고
    • Real-time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHDα) genes from Gram positive and Gram negative bacteria in soil and sediment samples
    • Cébron, A., Norini, M.-P., Beguiristain, T. and Leyval, C. (2008) Real-time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHDα) genes from Gram positive and Gram negative bacteria in soil and sediment samples. J Microbiol Meth 73, 148-159.
    • (2008) J Microbiol Meth , vol.73 , pp. 148-159
    • Cébron, A.1    Norini, M.-P.2    Beguiristain, T.3    Leyval, C.4
  • 7
    • 0034993324 scopus 로고    scopus 로고
    • Burkholderia fungorum sp. nov. and Burkholderia caledonica sp. nov., two species isolated from the environment, animals and human clinical samples
    • Coenye, T., Laevens, S., Willems, A., Ohlén, M., Hannant, W., Govan, J.R.W., Gillis, M., Falsen, E. et al. (2001) Burkholderia fungorum sp. nov. and Burkholderia caledonica sp. nov., two species isolated from the environment, animals and human clinical samples. Int J Syst Evol Micr 51, 1099-1107.
    • (2001) Int J Syst Evol Micr , vol.51 , pp. 1099-1107
    • Coenye, T.1    Laevens, S.2    Willems, A.3    Ohlén, M.4    Hannant, W.5    Govan, J.R.W.6    Gillis, M.7    Falsen, E.8
  • 8
    • 0031732597 scopus 로고    scopus 로고
    • Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints
    • Felske, A., Akkermans, A.D.L. and De Vos, W.M. (1998) Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints. Appl Environ Microbiol 64, 4581-4587.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4581-4587
    • Felske, A.1    Akkermans, A.D.L.2    De Vos, W.M.3
  • 9
    • 46049121122 scopus 로고    scopus 로고
    • Microbial transformation and degradation of polychlorinated biphenyls
    • Field, J.A. and Sierra-Alvarez, R. (2008) Microbial transformation and degradation of polychlorinated biphenyls. Environ Poll 155, 1-12.
    • (2008) Environ Poll , vol.155 , pp. 1-12
    • Field, J.A.1    Sierra-Alvarez, R.2
  • 10
    • 0019986729 scopus 로고
    • Numerical classification of some Rhodococci, Corynebacteria and related organisms
    • Goodfellow, M., Weaver, C.R. and Minnikin, D.E. (1982) Numerical classification of some Rhodococci, Corynebacteria and related organisms. J Gen Microbiol 128, 731-745.
    • (1982) J Gen Microbiol , vol.128 , pp. 731-745
    • Goodfellow, M.1    Weaver, C.R.2    Minnikin, D.E.3
  • 11
    • 0036800450 scopus 로고    scopus 로고
    • Diversity of transconjugants that acquired plasmid pJP4 or pEMT1 after inoculation of a donor strain in the A- and B-horizon of an agricultural soil and description of Burkholderia hospital sp. nov. and Burkholderia terricola sp. nov
    • Goris, J., Dejonghe, W., Falsen, E., De Clerck, E., Geeraerts, B., Willems, A., Top, E.M., Vandamme, P. et al. (2002) Diversity of transconjugants that acquired plasmid pJP4 or pEMT1 after inoculation of a donor strain in the A- and B-horizon of an agricultural soil and description of Burkholderia hospital sp. nov. and Burkholderia terricola sp. nov. Syst Appl Microbiol 25, 340-352.
    • (2002) Syst Appl Microbiol , vol.25 , pp. 340-352
    • Goris, J.1    Dejonghe, W.2    Falsen, E.3    De Clerck, E.4    Geeraerts, B.5    Willems, A.6    Top, E.M.7    Vandamme, P.8
  • 14
    • 70350426874 scopus 로고    scopus 로고
    • Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from aged refuse for microbial community analysis
    • He, Y., Zhao, Y., Zhou, G. and Huang, M. (2009) Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from aged refuse for microbial community analysis. World J Microb Biot 25, 2043-2051.
    • (2009) World J Microb Biot , vol.25 , pp. 2043-2051
    • He, Y.1    Zhao, Y.2    Zhou, G.3    Huang, M.4
  • 15
    • 0037219048 scopus 로고    scopus 로고
    • Detection and quantification of Escherichia coli O157:H7 in environmental samples by real-time PCR
    • Ibekwe, A.M. and Grieve, C.M. (2002) Detection and quantification of Escherichia coli O157:H7 in environmental samples by real-time PCR. J Appl Microbiol 94, 421-431.
    • (2002) J Appl Microbiol , vol.94 , pp. 421-431
    • Ibekwe, A.M.1    Grieve, C.M.2
  • 16
    • 84867034429 scopus 로고    scopus 로고
    • Bioaugmentation for in situ soil remediation: how to ensure the success of such a process
    • ed. Singh, A., Nagina Parmar, N. and Kuhad, R.C. Berlin: Springer-Verlag.
    • Lebeau, T. (2011) Bioaugmentation for in situ soil remediation: how to ensure the success of such a process. In Bioaugmentation, Biostimulation and Biocontrol ed. Singh, A., Nagina Parmar, N. and Kuhad, R.C. pp 129-186. Berlin: Springer-Verlag.
    • (2011) Bioaugmentation, Biostimulation and Biocontrol , pp. 129-186
    • Lebeau, T.1
  • 18
    • 0006499313 scopus 로고
    • Bacteriaceae (Stäbchenbakterien)
    • In ed. Engler, A. and Prantl, K. W. Leipzig: Engelmann.
    • Migula, W. (1895) Bacteriaceae (Stäbchenbakterien). In Die Natürlichen Pflanzenfamilien ed. Engler, A. and Prantl, K. pp. 20-30. W. Leipzig: Engelmann.
    • (1895) Die Natürlichen Pflanzenfamilien , pp. 20-30
    • Migula, W.1
  • 19
    • 77954682617 scopus 로고    scopus 로고
    • Bioaugmentation as a strategy for cleaning up of soils contaminated with aromatic compounds
    • Mrozik, A. and Piotrowska-Seget, Z. (2010) Bioaugmentation as a strategy for cleaning up of soils contaminated with aromatic compounds. Microbiol Res 165, 363-375.
    • (2010) Microbiol Res , vol.165 , pp. 363-375
    • Mrozik, A.1    Piotrowska-Seget, Z.2
  • 20
    • 0033028580 scopus 로고    scopus 로고
    • Relationship of Bacillus subtilis clades associated with strains 168 and W23: a proposal for Bacillus subtilis subsp. subtilis subsp. nov. and Bacillus subtilis subsp. spizizenii subsp. nov
    • Nakamura, L.K., Roberts, M.S. and Cohan, F.M. (1999) Relationship of Bacillus subtilis clades associated with strains 168 and W23: a proposal for Bacillus subtilis subsp. subtilis subsp. nov. and Bacillus subtilis subsp. spizizenii subsp. nov. Int J Syst Bacteriol 49, 1211-1215.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 1211-1215
    • Nakamura, L.K.1    Roberts, M.S.2    Cohan, F.M.3
  • 21
    • 21344459511 scopus 로고    scopus 로고
    • Biotechnological potential within the genus Burkholderia
    • O'Sullivan, L.A. and Mahenthiralingam, E. (2005) Biotechnological potential within the genus Burkholderia. Lett Appl Microbiol 41, 8-11.
    • (2005) Lett Appl Microbiol , vol.41 , pp. 8-11
    • O'Sullivan, L.A.1    Mahenthiralingam, E.2
  • 22
    • 82955213061 scopus 로고    scopus 로고
    • Antioxidant compounds improved PCB-degradation by Burkholderia xenovorans strain LB400
    • Ponce, B.L., Latorre, V.K., González, M. and Seeger, M. (2011) Antioxidant compounds improved PCB-degradation by Burkholderia xenovorans strain LB400. Enzyme Microb Tech 49, 509-516.
    • (2011) Enzyme Microb Tech , vol.49 , pp. 509-516
    • Ponce, B.L.1    Latorre, V.K.2    González, M.3    Seeger, M.4
  • 23
    • 77955558723 scopus 로고    scopus 로고
    • Mineralization of PCBs by the genetically modified strain Cupriavidus necator JMS34 and its application for bioremediation of PCB in soil
    • Saavedra, J.M., Acevedo, F., González, M. and Seeger, M. (2010) Mineralization of PCBs by the genetically modified strain Cupriavidus necator JMS34 and its application for bioremediation of PCB in soil. Appl Microbiol Biot 87, 1543-1754.
    • (2010) Appl Microbiol Biot , vol.87 , pp. 1543-1754
    • Saavedra, J.M.1    Acevedo, F.2    González, M.3    Seeger, M.4
  • 24
    • 0021365987 scopus 로고
    • Transfer of Streptococcus faecalis and Streptococcus faecium to the genus Enterococcus nom. rev. as Enterococcus faecalis comb. nov. and Enterococcus faecium comb. nov
    • Schleifer, K.H. and Kilpper-Bälz, R. (1984) Transfer of Streptococcus faecalis and Streptococcus faecium to the genus Enterococcus nom. rev. as Enterococcus faecalis comb. nov. and Enterococcus faecium comb. nov. Int J Syst Bacteriol 34, 31-34.
    • (1984) Int J Syst Bacteriol , vol.34 , pp. 31-34
    • Schleifer, K.H.1    Kilpper-Bälz, R.2
  • 25
    • 38649129374 scopus 로고    scopus 로고
    • Levels and congener distributions of PCDDs, PCDFs and dioxin-like PCBs in environmental and human samples: a review
    • Srogi, K. (2008) Levels and congener distributions of PCDDs, PCDFs and dioxin-like PCBs in environmental and human samples: a review. Environ Chem Lett 6, 1-28.
    • (2008) Environ Chem Lett , vol.6 , pp. 1-28
    • Srogi, K.1
  • 27
    • 0023119345 scopus 로고
    • Reclassification of Pseudomonas acidovorans den Dooren de Jong 1926 and Pseudomonas testosteroni Marcus and Talalay 1956 as Comamonas acidovorans comb. nov. and Comamonas testosteroni comb. nov., with an emended description of the genus Comamonas
    • Tamaoka, J., Ha, D.M. and Komagata, K. (1987) Reclassification of Pseudomonas acidovorans den Dooren de Jong 1926 and Pseudomonas testosteroni Marcus and Talalay 1956 as Comamonas acidovorans comb. nov. and Comamonas testosteroni comb. nov., with an emended description of the genus Comamonas. Int J Syst Bacteriol 37, 52-59.
    • (1987) Int J Syst Bacteriol , vol.37 , pp. 52-59
    • Tamaoka, J.1    Ha, D.M.2    Komagata, K.3
  • 29
    • 79751532852 scopus 로고    scopus 로고
    • Potential for biodegradation of polychlorinated biphenyls (PCBs) by Sinorhizobium meliloti
    • Tu, C., Teng, Y., Luo, Y., Li, X., Sun, X., Li, Z., Liu, W. and Christie, P. (2011) Potential for biodegradation of polychlorinated biphenyls (PCBs) by Sinorhizobium meliloti. J Hazard Mater 186, 1438-1444.
    • (2011) J Hazard Mater , vol.186 , pp. 1438-1444
    • Tu, C.1    Teng, Y.2    Luo, Y.3    Li, X.4    Sun, X.5    Li, Z.6    Liu, W.7    Christie, P.8
  • 30
    • 0036959851 scopus 로고    scopus 로고
    • Burkholderia tuberum sp. nov. and Burkholderia phymatum sp. nov., nodulate the roots of tropical legumes
    • Vandamme, P., Goris, J., Chen, W.M., De Vos, P. and Willems, A. (2002) Burkholderia tuberum sp. nov. and Burkholderia phymatum sp. nov., nodulate the roots of tropical legumes. Syst Appl Microbiol 25, 507-512.
    • (2002) Syst Appl Microbiol , vol.25 , pp. 507-512
    • Vandamme, P.1    Goris, J.2    Chen, W.M.3    De Vos, P.4    Willems, A.5
  • 31
    • 35649005948 scopus 로고    scopus 로고
    • Burkholderia bryophila sp. nov. and Burkholderia megapolitana sp. nov., moss-associated species with antifungal and plant-growth-promoting properties
    • Vandamme, P., Opelt, K., Knöchel, N., Berg, C., Schönmann, S., De Brandt, E., Eberl, L., Falsen, E. et al. (2007) Burkholderia bryophila sp. nov. and Burkholderia megapolitana sp. nov., moss-associated species with antifungal and plant-growth-promoting properties. Int J Syst Evol Micr 57, 2228-2235.
    • (2007) Int J Syst Evol Micr , vol.57 , pp. 2228-2235
    • Vandamme, P.1    Opelt, K.2    Knöchel, N.3    Berg, C.4    Schönmann, S.5    De Brandt, E.6    Eberl, L.7    Falsen, E.8
  • 32
    • 0031775874 scopus 로고    scopus 로고
    • Burkholderia graminis sp. nov., a rhizospheric Burkholderia specie, and reassessment of [Pseudomonas] phenazinium, [Pseudomonas] pyrrocinia and [Pseudomonas] glathei as Burkholderia
    • Viallard, V., Poirier, I., Cournoyer, B., Haurat, J., Wiebkin, S., Ophel-Keller, K. and Balandreau, J. (1998) Burkholderia graminis sp. nov., a rhizospheric Burkholderia specie, and reassessment of [Pseudomonas] phenazinium, [Pseudomonas] pyrrocinia and [Pseudomonas] glathei as Burkholderia. Int J Syst Bacteriol 48, 549-563.
    • (1998) Int J Syst Bacteriol , vol.48 , pp. 549-563
    • Viallard, V.1    Poirier, I.2    Cournoyer, B.3    Haurat, J.4    Wiebkin, S.5    Ophel-Keller, K.6    Balandreau, J.7
  • 33
    • 0035742567 scopus 로고    scopus 로고
    • Bioremediation. An overview
    • Vidali, M. (2001) Bioremediation. An overview. Pure Appl Chem 73, 1163-1172.
    • (2001) Pure Appl Chem , vol.73 , pp. 1163-1172
    • Vidali, M.1
  • 34
    • 1842582678 scopus 로고    scopus 로고
    • Real-time PCR quantification of a green fluorescent protein-labeled, genetically engineered Pseudomonas putida strain during 2-chlorobenzoate degradation in soil
    • Wang, G., Gentry, T.J., Grass, G., Josephson, K., Rensing, C. and Pepper, I.L. (2004) Real-time PCR quantification of a green fluorescent protein-labeled, genetically engineered Pseudomonas putida strain during 2-chlorobenzoate degradation in soil. FEMS Microbiol Lett 233, 307-314.
    • (2004) FEMS Microbiol Lett , vol.233 , pp. 307-314
    • Wang, G.1    Gentry, T.J.2    Grass, G.3    Josephson, K.4    Rensing, C.5    Pepper, I.L.6
  • 36
    • 0034091987 scopus 로고    scopus 로고
    • Burkholderia uboniae sp. nov., L-arabinose-assimilating but different from Burkholderia thailandensis and Burkholderia vietnamiensis
    • Yabuuchi, E., Kawamura, Y., Ezaki, T., Ikedo, M., Dejsirilert, S., Fujiwara, N., Naka, T. and Kobayashi, K. (2000) Burkholderia uboniae sp. nov., L-arabinose-assimilating but different from Burkholderia thailandensis and Burkholderia vietnamiensis. Microbiol Immunol 44, 307-317.
    • (2000) Microbiol Immunol , vol.44 , pp. 307-317
    • Yabuuchi, E.1    Kawamura, Y.2    Ezaki, T.3    Ikedo, M.4    Dejsirilert, S.5    Fujiwara, N.6    Naka, T.7    Kobayashi, K.8
  • 37
    • 0141614053 scopus 로고    scopus 로고
    • Classification and nomenclature of Agrobacterium and Rhizobium - a reply to Farrand (2003)
    • Young, J.M., Kuykendall, L.D., Martínez-Romero, E., Kerr, A. and Sawada, H. (2003) Classification and nomenclature of Agrobacterium and Rhizobium - a reply to Farrand et al. (2003). Int J Syst Evol Micr 53, 1689-1695.
    • (2003) Int J Syst Evol Micr , vol.53 , pp. 1689-1695
    • Young, J.M.1    Kuykendall, L.D.2    Martínez-Romero, E.3    Kerr, A.4    Sawada, H.5
  • 38
    • 0034063440 scopus 로고    scopus 로고
    • Burkholderia kururiensis sp. nov., a trichloroethylene (TCE)-degrading bacterium isolated from an aquifer polluted with TCE
    • Zhang, H., Hanada, S., Shigematsu, T., Shibuya, K., Kamagata, Y., Kanagawa, T. and Lurane, R. (2000) Burkholderia kururiensis sp. nov., a trichloroethylene (TCE)-degrading bacterium isolated from an aquifer polluted with TCE. Int J Syst Evol Micr 50, 743-749.
    • (2000) Int J Syst Evol Micr , vol.50 , pp. 743-749
    • Zhang, H.1    Hanada, S.2    Shigematsu, T.3    Shibuya, K.4    Kamagata, Y.5    Kanagawa, T.6    Lurane, R.7


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