메뉴 건너뛰기




Volumn 26, Issue 12, 2012, Pages 1343-1353

Modeling the evolution of drug resistance in malaria

Author keywords

Coevolution; DHFR; Drug resistance; Evolution; Malaria; Phylogeny; Plasmodium

Indexed keywords

BIOLOGY; DISEASES; DRUG THERAPY;

EID: 84876286536     PISSN: 0920654X     EISSN: 15734951     Source Type: Journal    
DOI: 10.1007/s10822-012-9618-2     Document Type: Article
Times cited : (8)

References (48)
  • 1
    • 84876295688 scopus 로고    scopus 로고
    • Center of Disease Control Accessed Jan 10, 2012
    • Center of Disease Control. http://www.cdc.gov/malaria/about/facts.html, Accessed Jan 10, 2012
  • 2
    • 84864334117 scopus 로고    scopus 로고
    • A revised timeline for the origin of Plasmodium falciparum as a human pathogen
    • 10.1007/s00239-011-9476-x
    • Baron JM, Higgins JM, Dzik WH (2010) A revised timeline for the origin of Plasmodium falciparum as a human pathogen. J Mol Evol 73:297-304
    • (2010) J Mol Evol , vol.73 , pp. 297-304
    • Baron, J.M.1    Higgins, J.M.2    Dzik, W.H.3
  • 3
    • 77954593415 scopus 로고    scopus 로고
    • A molecular clock for malaria parasites
    • 10.1126/science.1188954 1:CAS:528:DC%2BC3cXosVWgu7w%3D
    • Ricklefs RE, Outlaw DC (2010) A molecular clock for malaria parasites. Science 329:226-229
    • (2010) Science , vol.329 , pp. 226-229
    • Ricklefs, R.E.1    Outlaw, D.C.2
  • 4
    • 0033182111 scopus 로고    scopus 로고
    • Evolution of Plasmodium and the recent origin of the world populations of Plasmodium falciparum
    • 1:CAS:528:DC%2BD3MXjs1Cjs7s%3D
    • Ayala FJ, Escalante AA, Rich SM (1999) Evolution of Plasmodium and the recent origin of the world populations of Plasmodium falciparum. Parassitologia 41:55-68
    • (1999) Parassitologia , vol.41 , pp. 55-68
    • Ayala, F.J.1    Escalante, A.A.2    Rich, S.M.3
  • 5
    • 79952651273 scopus 로고    scopus 로고
    • Cluster to evolution of the SERA mutigene family in 18 Plasmodium species
    • 10.1371/journal.pone.0017775 1:CAS:528:DC%2BC3MXktVWjtr0%3D
    • Arisue N, Kawai S, Hirai M, Palacpac NM, Jia M, Kaneko A, Tanabe K, Horii T (2011) Cluster to evolution of the SERA mutigene family in 18 Plasmodium species. PLoS ONE 6:e17775
    • (2011) PLoS ONE , vol.6 , pp. 17775
    • Arisue, N.1    Kawai, S.2    Hirai, M.3    Palacpac, N.M.4    Jia, M.5    Kaneko, A.6    Tanabe, K.7    Horii, T.8
  • 6
    • 0000899457 scopus 로고
    • Dihydrofolate Reductases
    • Wiley, New York
    • Blakely RL (ed) (1985) Dihydrofolate Reductases. In: Folates and Pterins, Wiley, New York, pp 191-253
    • (1985) Folates and Pterins , pp. 191-253
    • Blakely, R.L.1
  • 8
    • 0036289101 scopus 로고    scopus 로고
    • Highly divergent dihydrofolate reductases conserve complex folding mechanisms
    • 10.1006/jmbi.2001.5230 1:CAS:528:DC%2BD38XhsFGjsg%3D%3D
    • Wallace L, Matthews CR (2002) Highly divergent dihydrofolate reductases conserve complex folding mechanisms. J Mol Biol 315:193-211
    • (2002) J Mol Biol , vol.315 , pp. 193-211
    • Wallace, L.1    Matthews, C.R.2
  • 9
    • 0017748623 scopus 로고
    • Folate metabolism in malaria
    • 1:CAS:528:DyaE1cXhtValtLs%3D
    • Ferone R (1977) Folate metabolism in malaria. Bull World Health Organ 55:291
    • (1977) Bull World Health Organ , vol.55 , pp. 291
    • Ferone, R.1
  • 10
    • 0028315470 scopus 로고
    • The methotrexate story: A paradigm for development of cancer chemotherapeutic agents
    • 10.1016/0065-2571(94)90025-6 1:CAS:528:DyaK2cXmvFWksbY%3D
    • Huennekens FM (1994) The methotrexate story: a paradigm for development of cancer chemotherapeutic agents. Adv Enzyme Regul 34:397
    • (1994) Adv Enzyme Regul , vol.34 , pp. 397
    • Huennekens, F.M.1
  • 11
    • 0014886077 scopus 로고
    • Dihydrofolate reductase inhibitors as antimicrobial agents and their potentiation by sulfonamides
    • 10.3109/10408367009043919 1:STN:280:DyaE38%2Fmtlektw%3D%3D
    • Rollo IM (1970) Dihydrofolate reductase inhibitors as antimicrobial agents and their potentiation by sulfonamides. CRC Crit Rev Clin Lab Sci 1:565
    • (1970) CRC Crit Rev Clin Lab Sci , vol.1 , pp. 565
    • Rollo, I.M.1
  • 12
    • 71749089415 scopus 로고    scopus 로고
    • Cancer research: From folate antagonism to molecular targets
    • 10.1016/j.beha.2009.09.004
    • Bertino JR (2009) Cancer research: from folate antagonism to molecular targets. Best Pract Res Clin Haematol 22:577-582
    • (2009) Best Pract Res Clin Haematol , vol.22 , pp. 577-582
    • Bertino, J.R.1
  • 13
    • 67650397861 scopus 로고    scopus 로고
    • Spread and evolution of Plasmodium falciparum drug resistance
    • 10.1016/j.parint.2009.04.004 1:CAS:528:DC%2BD1MXos12qs7s%3D
    • Mita T, Tanabe MT, Kita K (2009) Spread and evolution of Plasmodium falciparum drug resistance. Parasit Int 58:201-209
    • (2009) Parasit Int , vol.58 , pp. 201-209
    • Mita, T.1    Tanabe, M.T.2    Kita, K.3
  • 14
    • 62949106183 scopus 로고    scopus 로고
    • Mutational 'hot-spots' in mammalian, bacterial and protozoal resistance: Sequence and structural comparison
    • 10.1016/j.drup.2009.02.001 1:CAS:528:DC%2BD1MXjvVans7w%3D
    • Volpato JP, Pelletier JN (2009) Mutational 'hot-spots' in mammalian, bacterial and protozoal resistance: sequence and structural comparison. Drug Resist Updat 12:28-41
    • (2009) Drug Resist Updat , vol.12 , pp. 28-41
    • Volpato, J.P.1    Pelletier, J.N.2
  • 15
    • 33750355062 scopus 로고    scopus 로고
    • Molecular characterization of Canadian pediatric multi-drug resistant Streptococcus pneumonia from 1998-2004
    • 10.1016/j.ijantimicag.2006.08.005 1:CAS:528:DC%2BD28XhtFent77L
    • Zhanel GG, Wang X, Nichol K, Nikulin A, Wierzbowski AK, Mulvey M, Hoban DJ (2006) Molecular characterization of Canadian pediatric multi-drug resistant Streptococcus pneumonia from 1998-2004. Int J Antimicrob Agents 28:465-471
    • (2006) Int J Antimicrob Agents , vol.28 , pp. 465-471
    • Zhanel, G.G.1    Wang, X.2    Nichol, K.3    Nikulin, A.4    Wierzbowski, A.K.5    Mulvey, M.6    Hoban, D.J.7
  • 17
    • 0023630539 scopus 로고
    • Spread of chloroquine resistance in Plasmodium falciparum
    • 10.1016/0169-4758(87)90147-5 1:STN:280:DC%2BD2cvpvVegtw%3D%3D
    • Payne D (1987) Spread of chloroquine resistance in Plasmodium falciparum. Parasitol Today B 3:241-246
    • (1987) Parasitol Today B , vol.3 , pp. 241-246
    • Payne, D.1
  • 18
    • 0025951370 scopus 로고
    • The development and spread of drug resistant malaria
    • 10.1016/0169-4758(91)90262-M 1:STN:280:DC%2BD2cvpvVOmtA%3D%3D
    • Wernsdorfer WH (1991) The development and spread of drug resistant malaria. Parasitol Today 7:297-303
    • (1991) Parasitol Today , vol.7 , pp. 297-303
    • Wernsdorfer, W.H.1
  • 19
    • 53749089462 scopus 로고    scopus 로고
    • Genetic evidence for Plasmodium falciparum resistance to chloroquine and pyrimethamine in Indochina and the Western Pacific between 1984 and 1998
    • 1:CAS:528:DC%2BD1cXht12iur%2FL
    • Saito-Nakano Y, Tanabe K, Kamei K, Iwagami M, Komaki-Yasuda K, Kawazu S, Kano S, Ohmae H, Endo T (2008) Genetic evidence for Plasmodium falciparum resistance to chloroquine and pyrimethamine in Indochina and the Western Pacific between 1984 and 1998. Am J Trop Med Hyg 79(4):613-619
    • (2008) Am J Trop Med Hyg , vol.79 , Issue.4 , pp. 613-619
    • Saito-Nakano, Y.1    Tanabe, K.2    Kamei, K.3    Iwagami, M.4    Komaki-Yasuda, K.5    Kawazu, S.6    Kano, S.7    Ohmae, H.8    Endo, T.9
  • 20
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • 1:CAS:528:DC%2BD3cXhtVyjs7Y%3D
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98
    • (1999) Nucl Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 21
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • 10.1093/molbev/msr121 1:CAS:528:DC%2BC3MXht1eiu73K
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 22
    • 79960610933 scopus 로고    scopus 로고
    • Structure-based anaylsis of dihydrofolate reductcase evolution
    • 10.1016/j.ympev.2011.06.005 1:CAS:528:DC%2BC3MXptlyht7Y%3D
    • Hecht D, Tran J, Fogel GB (2011) Structure-based anaylsis of dihydrofolate reductcase evolution. Mol Phylo Evol 61:212-230
    • (2011) Mol Phylo Evol , vol.61 , pp. 212-230
    • Hecht, D.1    Tran, J.2    Fogel, G.B.3
  • 23
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • 10.1002/elps.1150181505 1:CAS:528:DyaK1cXhvFaks70%3D
    • Guex N, Peitsch MC (1997) SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18:2714-2723
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 24
    • 34547844062 scopus 로고    scopus 로고
    • TOPD/FMTS: A new software to compare phylogenetic trees
    • 10.1093/bioinformatics/btm135
    • Puigbò P, Garcia-Vallvé S, McInerney JO (2007) TOPD/FMTS: a new software to compare phylogenetic trees. Bioinformatics 23:1556-1558
    • (2007) Bioinformatics , vol.23 , pp. 1556-1558
    • Puigbò, P.1    Garcia-Vallvé, S.2    McInerney, J.O.3
  • 25
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • 10.1016/0025-5564(81)90043-2
    • Robinson DF, Foulds LR (1981) Comparison of phylogenetic trees. Math Biosci 53:131-147
    • (1981) Math Biosci , vol.53 , pp. 131-147
    • Robinson, D.F.1    Foulds, L.R.2
  • 26
    • 12044252586 scopus 로고
    • Distribution of tree comparison metrics - Some new results
    • Steel MA, Penny D (1993) Distribution of tree comparison metrics - some new results. Syst Biol 42:126-141
    • (1993) Syst Biol , vol.42 , pp. 126-141
    • Steel, M.A.1    Penny, D.2
  • 27
    • 0002393841 scopus 로고
    • The use of tree metrics
    • 10.2307/2413347
    • Penny D, Hendy MD (1985) The use of tree metrics. Syst Zool 34:75-82
    • (1985) Syst Zool , vol.34 , pp. 75-82
    • Penny, D.1    Hendy, M.D.2
  • 28
    • 0031552362 scopus 로고    scopus 로고
    • Development and validation of a genetic algorithm for flexible docking
    • 10.1006/jmbi.1996.0897 1:CAS:528:DyaK2sXis1KntLo%3D
    • Jones G, Willett P, Glen RC, Leach AR, Taylor R (1997) Development and validation of a genetic algorithm for flexible docking. J Mol Biol 267:727-748
    • (1997) J Mol Biol , vol.267 , pp. 727-748
    • Jones, G.1    Willett, P.2    Glen, R.C.3    Leach, A.R.4    Taylor, R.5
  • 29
    • 62449330667 scopus 로고    scopus 로고
    • Empirical scoring functions for advanced protein-ligand docking with PLANTS
    • 10.1021/ci800298z 1:CAS:528:DC%2BD1MXisVSquw%3D%3D
    • Korb O, Stützle T, Exner TE (2009) Empirical scoring functions for advanced protein-ligand docking with PLANTS. J Chem Inform Model 49:84-96
    • (2009) J Chem Inform Model , vol.49 , pp. 84-96
    • Korb, O.1    Stützle, T.2    Exner, T.E.3
  • 30
    • 40649099359 scopus 로고    scopus 로고
    • In Silico screening against wild-type and mutant Plasmodium falciparum Dihydrofolate Reductase
    • 10.1016/j.jmgm.2007.10.006 1:CAS:528:DC%2BD1cXjtlyjtbo%3D
    • Fogel GB, Cheung M, Pittman E, Hecht D (2008) In Silico screening against wild-type and mutant Plasmodium falciparum Dihydrofolate Reductase. J Mol Graph Model 26:1145-1152
    • (2008) J Mol Graph Model , vol.26 , pp. 1145-1152
    • Fogel, G.B.1    Cheung, M.2    Pittman, E.3    Hecht, D.4
  • 31
    • 38649091945 scopus 로고    scopus 로고
    • Modeling the inhibition of quadruple mutant plasmodium falciparum dihydrofolate reductase by pyrimethamine derivatives
    • 10.1007/s10822-007-9152-9 1:CAS:528:DC%2BD1cXps1ahug%3D%3D
    • Fogel GB, Cheung M, Pittman E, Hecht D (2008) Modeling the inhibition of quadruple mutant plasmodium falciparum dihydrofolate reductase by pyrimethamine derivatives. J Comput Aided Mol Des 22:29-38
    • (2008) J Comput Aided Mol des , vol.22 , pp. 29-38
    • Fogel, G.B.1    Cheung, M.2    Pittman, E.3    Hecht, D.4
  • 33
    • 52449107804 scopus 로고    scopus 로고
    • Big bang in the evolution of extant malaria parasites
    • 10.1093/molbev/msn171 1:CAS:528:DC%2BD1cXht1ektbnK
    • Hayakawa T, Culleton R, Otani H, Horii T, Tanabe K (2008) Big bang in the evolution of extant malaria parasites. Mol Biol Evol 25:2233-2239
    • (2008) Mol Biol Evol , vol.25 , pp. 2233-2239
    • Hayakawa, T.1    Culleton, R.2    Otani, H.3    Horii, T.4    Tanabe, K.5
  • 34
    • 0028113391 scopus 로고
    • Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences
    • 10.1073/pnas.91.24.11373 1:CAS:528:DyaK2MXitlyrsrg%3D
    • Escalante AA, Ayala FJ (1994) Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences. Proc Natl Acad Sci USA 91:11373-11377
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11373-11377
    • Escalante, A.A.1    Ayala, F.J.2
  • 35
    • 0029002122 scopus 로고
    • Evolutionary origin of human and primate malarias: Evidence from the circumsporozoite protein gene
    • 1:CAS:528:DyaK2MXmsVOqs7g%3D
    • Escalante AA, Barrio E, Ayala FJ (1995) Evolutionary origin of human and primate malarias: evidence from the circumsporozoite protein gene. Mol Biol Evol 12:616-626
    • (1995) Mol Biol Evol , vol.12 , pp. 616-626
    • Escalante, A.A.1    Barrio, E.2    Ayala, F.J.3
  • 36
    • 0032493346 scopus 로고    scopus 로고
    • The evolution of primate malaria parasites based on the gene encoding cytochrome b from the linear mitochondrial genome
    • 10.1073/pnas.95.14.8124 1:CAS:528:DyaK1cXks1Skurs%3D
    • Escalante AA, Freeland DE, Collins WE, Lal AA (1998) The evolution of primate malaria parasites based on the gene encoding cytochrome b from the linear mitochondrial genome. Proc Natl Acad Sci USA 95:8124-8129
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 8124-8129
    • Escalante, A.A.1    Freeland, D.E.2    Collins, W.E.3    Lal, A.A.4
  • 37
    • 0017275995 scopus 로고
    • A genetic investigation of virulence in a rodent malaria parasite
    • 10.1017/S0031182000048484 1:STN:280:DyaE287nsFaisA%3D%3D
    • Walliker D, Sanderson A, Yoeli M, Hargreaves BJ (1976) A genetic investigation of virulence in a rodent malaria parasite. Parasitology 72:183-194
    • (1976) Parasitology , vol.72 , pp. 183-194
    • Walliker, D.1    Sanderson, A.2    Yoeli, M.3    Hargreaves, B.J.4
  • 38
    • 38149046559 scopus 로고    scopus 로고
    • Congenicity and genetic polymorphism in cloned lines derived from a single isolate of a rodent malaria parasite
    • 10.1016/j.molbiopara.2007.10.011 1:CAS:528:DC%2BD1cXot1yqsg%3D%3D
    • Pattaradilokrat S, Cheesman SJ, Carter R (2008) Congenicity and genetic polymorphism in cloned lines derived from a single isolate of a rodent malaria parasite. Mol Biochem Parasitol 157:244-247
    • (2008) Mol Biochem Parasitol , vol.157 , pp. 244-247
    • Pattaradilokrat, S.1    Cheesman, S.J.2    Carter, R.3
  • 39
    • 0024366276 scopus 로고
    • Antifolate drug selection results in duplication and rearrangement of chromosome 7 in Plasmodium chabaudi
    • 1:CAS:528:DyaK3cXitFWktrw%3D
    • Cowman AF, Lew AM (1989) Antifolate drug selection results in duplication and rearrangement of chromosome 7 in Plasmodium chabaudi. Mol Cell Biol 9:5182-5188
    • (1989) Mol Cell Biol , vol.9 , pp. 5182-5188
    • Cowman, A.F.1    Lew, A.M.2
  • 41
    • 0031037364 scopus 로고    scopus 로고
    • Antifolate-resistant mutants of Plasmodium falciparum dihydrofolate reductase
    • 10.1073/pnas.94.4.1124 1:CAS:528:DyaK2sXhtlGiu70%3D
    • Sirawaraporn W, Sathikul T, Sirawaraporn R, Yuthavong Y, Santi DV (1997) Antifolate-resistant mutants of Plasmodium falciparum dihydrofolate reductase. Proc Natl Acad Sci USA 94:1124-1129
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 1124-1129
    • Sirawaraporn, W.1    Sathikul, T.2    Sirawaraporn, R.3    Yuthavong, Y.4    Santi, D.V.5
  • 42
    • 24944558791 scopus 로고    scopus 로고
    • Crystal structure of dihydrofolate reductase from Plasmodium vivax: Pyrimethamine displacement linked with mutation-induced resistance
    • 10.1073/pnas.0501747102 1:CAS:528:DC%2BD2MXhtVaqu7bM
    • Kongsaeree P, Khongsuk P, Leartsakulpanich U, Chitnumsub P, Tarnchombpoo B, Walkinshaw MD, Yuthavong Y (2005) Crystal structure of dihydrofolate reductase from Plasmodium vivax: pyrimethamine displacement linked with mutation-induced resistance. Proc Natl Acad Sci USA 102:13046-13051
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 13046-13051
    • Kongsaeree, P.1    Khongsuk, P.2    Leartsakulpanich, U.3    Chitnumsub, P.4    Tarnchombpoo, B.5    Walkinshaw, M.D.6    Yuthavong, Y.7
  • 43
    • 0000841123 scopus 로고
    • Evidence that a point mutation in dihydrofolate reductase-thymidylate synthase confers resistance to pyrimethamine in falciparum malaria
    • 10.1073/pnas.85.23.9114 1:CAS:528:DyaL1MXjsVOisg%3D%3D
    • Peterson DS, Walliker D, Wellems TE (1988) Evidence that a point mutation in dihydrofolate reductase-thymidylate synthase confers resistance to pyrimethamine in falciparum malaria. Proc Natl Acad Sci USA 85:9114-9118
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 9114-9118
    • Peterson, D.S.1    Walliker, D.2    Wellems, T.E.3
  • 45
    • 78649365006 scopus 로고    scopus 로고
    • Compensatory mutations restore fitness during the evolution of dihydrofolate reductase
    • 10.1093/molbev/msq160 1:CAS:528:DC%2BC3cXhsVeksLrK
    • Brown KM, Costanzo MS, Xu W, Roy S, Lozovsky ER, Hartl DL (2010) Compensatory mutations restore fitness during the evolution of dihydrofolate reductase. Mol Biol Evol 27:2682-2690
    • (2010) Mol Biol Evol , vol.27 , pp. 2682-2690
    • Brown, K.M.1    Costanzo, M.S.2    Xu, W.3    Roy, S.4    Lozovsky, E.R.5    Hartl, D.L.6
  • 46
    • 80053133668 scopus 로고    scopus 로고
    • The evolutionary landscape of antifolate resistance in Plasmodium falciparum
    • 10.1007/s12041-011-0072-z 1:CAS:528:DC%2BC3MXht1ejtbzM
    • Costanzo MS, Hartl DL (2011) The evolutionary landscape of antifolate resistance in Plasmodium falciparum. J Genet 90:187-190
    • (2011) J Genet , vol.90 , pp. 187-190
    • Costanzo, M.S.1    Hartl, D.L.2
  • 48
    • 66149089880 scopus 로고    scopus 로고
    • A novel in silico approach to drug discovery via computational intelligence
    • 10.1021/ci9000647 1:CAS:528:DC%2BD1MXktVOlt7g%3D
    • Hecht D, Fogel G (2009) A novel in silico approach to drug discovery via computational intelligence. J Chem Inf Model 49:1105-1121
    • (2009) J Chem Inf Model , vol.49 , pp. 1105-1121
    • Hecht, D.1    Fogel, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.