Sequence analysis of a cryptic plasmid pKW2124 from Weissella cibaria KLC140 and construction of a surface display vector

Journal of Microbiology and Biotechnology

Volumn 23, Issue 4, 2013, Pages 545-554

  Kim, Soo Young ^a   Oh, Chang Geun ^a   Lee, Young Joo ^a   Choi, Kyu Ha ^a   Shin, Doo Sik ^a   Lee, Si Kyung ^a   Park, Kab Joo ^a   Shin, Hakdong ^b   Park, Myeong Soo ^c   Lee, Ju Hoon ^d  

^a Konkuk University   (South Korea)

^b Seoul National University   (South Korea)

^c Yeonsung University   (South Korea)

^d Kyung Hee University   (South Korea)

Author keywords

Expression vector; GFP; Plasmid; Sequence analysis; Weissella

Indexed keywords

CHLORAMPHENICOL ACETYLTRANSFERASE; GREEN FLUORESCENT PROTEIN; HYBRID PROTEIN; NUCLEASE S1; PLASMID DNA; SLGFP FUSED PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; CHLORAMPHENICOL ACETYLTRANSFERASE GENE; COMPUTER MODEL; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA REPLICATION ORIGIN; DNA SEQUENCE; EXPRESSION VECTOR; FLUORESCENCE; FUSION GENE; GENE CLUSTER; GENE FUSION; GFP GENE; LACTIC ACID BACTERIUM; LACTOBACILLUS ACIDOPHILUS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLASMID; PLASMID PKW2124; POLYMERASE CHAIN REACTION; PROTEIN SECRETION; SEQUENCE ALIGNMENT; SHUTTLE VECTOR; SLGFP FUSED GENE; SLPA GENE; SURFACE DISPLAY VECTOR; WEISSELLA CIBARIA;

EID: 84876198364     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: 10.4014/jmb.1301.01018     Document Type: Article

References (27)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol.215: 403-410.
2. Besemer, J. and M. Borodovsky. 2005. GeneMark: Web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 33: W451-W454.
3. Bjorkroth, K. J., U. Schillinger, R. Geisen, N. Weiss, B. Hoste, W. H. Holzapfel, et al. 2002. Taxonomic study of Weissella confusa and description of Weissella cibaria sp. nov.,detected in food and clinical samples. Int. J. Syst. Evol. Microbiol. 52:141-148.
4. Bolotin, A., P. Wincker, S. Mauger, O. Jaillon, K. Malarme, J. Weissenbach, et al. 2001. The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403.Genome Res. 11: 731-753.
5. Boot, H. J., C. P. Kolen, and P. H. Pouwels. 1995.Identification, cloning, and nucleotide sequence of a silent Slayer protein gene of Lactobacillus acidophilus ATCC 4356 which has extensive similarity with the S-layer protein gene of this species. J. Bacteriol. 177: 7222-7230.
6. Bouia, A., F. Bringel, L. Frey, B. Kammerer, A. Belarbi, A. Guyonvarch, and J. C. Hubert. 1989. Structural organization of pLP1, a cryptic plasmid from Lactobacillus plantarum CCM 1904. Plasmid 22: 185-192.
7. Carver, T., M. Berriman, A. Tivey, C. Patel, U. Böhme, B. G. Barrell, et al. 2008. Artemis and ACT: Viewing, annotating and comparing sequences stored in a relational database. Bioinformatics 24: 2672-2676.
8. Daming, R., W. Yinyu, W. Zilai, C. Jun, L. Hekui, and Z. Jingye. 2003. Complete DNA sequence and analysis of two cryptic plasmids isolated from Lactobacillus plantarum. Plasmid 50: 70-73.
9. Gros, M. F., H. te Riele, and S. D. Ehrlich. 1987. Rolling circle replication of single-stranded DNA plasmid pC194. EMBO J. 6: 3863-3869.
10. Jung, J. Y., S. H. Lee, J. M. Kim, M. S. Park, J.-W. Bae, Y. Hahn, et al. 2011. Metagenomic analysis of kimchi,a traditional Korean fermented food. Appl. Environ. Microbiol. 77: 2264-2274.
11. Kang, M. S., J. Chung, S. M. Kim, K. H. Yang, and J. S. Oh.2006. Effect of Weissella cibaria isolates on the formation of Streptococcus mutans biofilm. Caries Res. 40: 418-425.
12. Kang, M. S., B. G. Kim, J. Chung, H. C. Lee, and J. S. Oh.2006. Inhibitory effect of Weissella cibaria isolates on the production of volatile sulphur compounds. J. Clin. Periodontol.33: 226-232.
13. Kim, D.-S., S.-H. Choi, D.-W. Kim, S.-H. Nam, R. N. Kim, A. Kang, et al. 2011. Genome sequence of Weissella cibaria KACC 11862. J. Bacteriol. 193: 797-798.
14. Kleerebezem, M., J. Boekhorst, R. van Kranenburg, D. Molenaar, O. P. Kuipers, R. Leer, et al. 2003. Complete genome sequence of Lactobacillus plantarum WCFS1. Proc. Natl. Acad.Sci. USA 100: 1990-1995.
15. Marchler-Bauer, A., J. B. Anderson, F. Chitsaz, M. K. Derbyshire, C. DeWeese-Scott, J. H. Fong, et al. 2009. CDD:Specific functional annotation with the conserved domain database. Nucleic Acids Res. 37: D205-D210.
16. O'Brien, F. G., C. Price, W. B. Grubb, and J. E. Gustafson.2002. Genetic characterization of the fusidic acid and cadmium resistance determinants of Staphylococcus aureus plasmid pUB101. J. Antimicrob. Chemother. 50: 313-321.
17. Oh, H. M., Y. J. Cho, B. K. Kim, J. H. Roe, S. O. Kang, B. H. Nahm, et al. 2010. Complete genome sequence analysis of Leuconostoc kimchii IMSNU 11154. J. Bacteriol. 192: 3844-3845.
18. Park, M. S., S. H. Kim, J. D. Kim, S. E. Oh, K. J. Park, S. K. Lee, et al. 2007. Molecular characterization of plasmid DNA from Weisselia cibaria isolated from kimchi. Kor. J. Genet. 29:29-35.
19. Park, M. S., D. W. Shin, K. H. Lee, and G. E. Ji. 1999.Sequence analysis of plasmid pKJ50 from Bifidobacterium longum. Microbiology 145: 585-592.
20. Park, W. J., K. H. Lee, J. M. Lee, H. J. Lee, J. H. Kim, J.-H. Lee, et al. 2004. Characterization of pC7 from Lactobacillus paraplantarum C7 derived from kimchi and development of lactic acid bacteria-Escherichia coli shuttle vector. Plasmid 52:84-88.
21. Pavlova, S. I., A. O. Kilic, L. Topisirovic, N. Miladinov, C. Hatzos,and L. Tao. 2002.Characterization of a cryptic plasmid from Lactobacillus fermentum KC5b and its use for constructing a stable Lactobacillus cloning vector.Plasmid 47: 182-192.
22. Sambrook, J. and D. W. Russell. 2001. Molecular Cloning: A Laboratory Manual, 3rd Ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
23. Skaugen, M. 1989. The complete nucleotide sequence of a small cryptic plasmid from Lactobacillus plantarum. Plasmid 22: 175-179.
24. Stiles, M. E. and W. H. Holzapfel. 1997. Lactic acid bacteria of foods and their current taxonomy. Int. J. Food Microbiol. 36: 1-29.
25. Tatusova, T. A. and T. L. Madden. 1999. BLAST 2 sequences,a new tool for comparing protein and nucleotide sequences.FEMS Microbiol. Lett. 174: 247-250.
26. Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL_X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
27. Yu, J.-J., H.-J. Park, S.-G. Kim, and S.-H. Oh. 2009. Isolation, identification, and characterization of Weissella strains with high ornithine producing capacity from kimchi. Kor. J. Microbiol. 45:339-345.