-
1
-
-
34548060347
-
RNA polymerase: the most specific damage recognition protein in cellular responses to DNA damage
-
doi 10.1073/pnas.0706316104
-
Lindsey-Boltz LA, Sancar A, (2007) RNA polymerase: the most specific damage recognition protein in cellular responses to DNA damage? Proc Natl Acad Sci USA 104: 13213-13214 doi:10.1073/pnas.0706316104.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 13213-13214
-
-
Lindsey-Boltz, L.A.1
Sancar, A.2
-
2
-
-
84865757142
-
Landscape of transcription in human cells
-
doi 10.1038/nature11233
-
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, et al. (2012) Landscape of transcription in human cells. Nature 489: 101-108 doi:10.1038/nature11233.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
-
3
-
-
56749157389
-
Transcription-coupled DNA repair: two decades of progress and surprises
-
doi 10.1038/nrm2549
-
Hanawalt PC, Spivak G, (2008) Transcription-coupled DNA repair: two decades of progress and surprises. Nat Rev Mol Cell Biol 9: 958-970 doi:10.1038/nrm2549.
-
(2008)
Nat Rev Mol Cell Biol
, vol.9
, pp. 958-970
-
-
Hanawalt, P.C.1
Spivak, G.2
-
4
-
-
77954759085
-
The interface between transcription and mechanisms maintaining genome integrity
-
doi 10.1016/j.tibs.2010.02.001
-
Svejstrup JQ, (2010) The interface between transcription and mechanisms maintaining genome integrity. Trends Biochem Sci 35: 333-338 doi:10.1016/j.tibs.2010.02.001.
-
(2010)
Trends Biochem Sci
, vol.35
, pp. 333-338
-
-
Svejstrup, J.Q.1
-
5
-
-
74949110813
-
DNA double-strand breaks and ATM activation by transcription-blocking DNA lesions
-
Sordet O, Nakamura AJ, Redon CE, Pommier Y, (2010) DNA double-strand breaks and ATM activation by transcription-blocking DNA lesions. Cell Cycle 9: 274-278.
-
(2010)
Cell Cycle
, vol.9
, pp. 274-278
-
-
Sordet, O.1
Nakamura, A.J.2
Redon, C.E.3
Pommier, Y.4
-
6
-
-
84862829622
-
DNAPKcs-dependent arrest of RNA polymerase II transcription in the presence of DNA breaks
-
doi 10.1038/nsmb.2224
-
Pankotai T, Bonhomme C, Chen D, Soutoglou E (2012) DNAPKcs-dependent arrest of RNA polymerase II transcription in the presence of DNA breaks. Nat Struct Mol Biol. doi:10.1038/nsmb.2224.
-
(2012)
Nat Struct Mol Biol
-
-
Pankotai, T.1
Bonhomme, C.2
Chen, D.3
Soutoglou, E.4
-
7
-
-
84862224590
-
Homologous chromosomes make contact at the sites of double-strand breaks in genes in somatic G0/G1-phase human cells
-
doi 10.1073/pnas.1205759109
-
Gandhi M, Evdokimova VN, T Cuenco K, Nikiforova MN, Kelly LM, et al. (2012) Homologous chromosomes make contact at the sites of double-strand breaks in genes in somatic G0/G1-phase human cells. PNAS 109: 9454-9459 doi:10.1073/pnas.1205759109.
-
(2012)
PNAS
, vol.109
, pp. 9454-9459
-
-
Gandhi, M.1
Evdokimova, V.N.2
Cuenco, T.K.3
Nikiforova, M.N.4
Kelly, L.M.5
-
8
-
-
78650727733
-
Yeast Sen1 helicase protects the genome from transcription-associated instability
-
doi 10.1016/j.molcel.2010.12.007
-
Mischo HE, Gómez-González B, Grzechnik P, Rondón AG, Wei W, et al. (2011) Yeast Sen1 helicase protects the genome from transcription-associated instability. Mol Cell 41: 21-32 doi:10.1016/j.molcel.2010.12.007.
-
(2011)
Mol Cell
, vol.41
, pp. 21-32
-
-
Mischo, H.E.1
Gómez-González, B.2
Grzechnik, P.3
Rondón, A.G.4
Wei, W.5
-
9
-
-
84857098519
-
Yeast Transcription Termination Factor Rtt103 Functions in DNA Damage Response
-
doi 10.1371/journal.pone.0031288.t001
-
Srividya I, Tirupataiah S, Mishra K, (2012) Yeast Transcription Termination Factor Rtt103 Functions in DNA Damage Response. PLoS ONE 7: e31288 doi:10.1371/journal.pone.0031288.t001.
-
(2012)
PLoS ONE
, vol.7
-
-
Srividya, I.1
Tirupataiah, S.2
Mishra, K.3
-
10
-
-
35748950163
-
Damage-induced ubiquitylation of human RNA polymerase II by the ubiquitin ligase Nedd4, but not Cockayne syndrome proteins or BRCA1
-
doi 10.1016/j.molcel.2007.10.008
-
Anindya R, Aygün O, Svejstrup JQ, (2007) Damage-induced ubiquitylation of human RNA polymerase II by the ubiquitin ligase Nedd4, but not Cockayne syndrome proteins or BRCA1. Mol Cell 28: 386-397 doi:10.1016/j.molcel.2007.10.008.
-
(2007)
Mol Cell
, vol.28
, pp. 386-397
-
-
Anindya, R.1
Aygün, O.2
Svejstrup, J.Q.3
-
11
-
-
34547916116
-
RPA and ATR link transcriptional stress to p53
-
doi 10.1073/pnas.0705317104
-
Derheimer FA, O'Hagan HM, Krueger HM, Hanasoge S, Paulsen MT, et al. (2007) RPA and ATR link transcriptional stress to p53. Proc Natl Acad Sci USA 104: 12778-12783 doi:10.1073/pnas.0705317104.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 12778-12783
-
-
Derheimer, F.A.1
O'Hagan, H.M.2
Krueger, H.M.3
Hanasoge, S.4
Paulsen, M.T.5
-
12
-
-
73949101221
-
Distinct ubiquitin ligases act sequentially for RNA polymerase II polyubiquitylation
-
doi 10.1073/pnas.0907052106
-
Harreman M, Taschner M, Sigurdsson S, Anindya R, Reid J,et al. (2009) Distinct ubiquitin ligases act sequentially for RNA polymerase II polyubiquitylation. Proc Natl Acad Sci USA. doi:10.1073/pnas.0907052106.
-
(2009)
Proc Natl Acad Sci USA
-
-
Harreman, M.1
Taschner, M.2
Sigurdsson, S.3
Anindya, R.4
Reid, J.5
-
13
-
-
33751090746
-
Phosphorylation and functions of the RNA polymerase II CTD
-
doi 10.1101/gad.1477006
-
Phatnani HP, Greenleaf AL, (2006) Phosphorylation and functions of the RNA polymerase II CTD. Genes Dev 20: 2922-2936 doi:10.1101/gad.1477006.
-
(2006)
Genes Dev
, vol.20
, pp. 2922-2936
-
-
Phatnani, H.P.1
Greenleaf, A.L.2
-
14
-
-
44149124228
-
Cracking the RNA polymerase II CTD code
-
doi 10.1016/j.tig.2008.03.008
-
Egloff S, Murphy S, (2008) Cracking the RNA polymerase II CTD code. Trends Genet 24: 280-288 doi:10.1016/j.tig.2008.03.008.
-
(2008)
Trends Genet
, vol.24
, pp. 280-288
-
-
Egloff, S.1
Murphy, S.2
-
15
-
-
70449641057
-
Progression through the RNA polymerase II CTD cycle
-
doi 10.1016/j.molcel.2009.10.019
-
Buratowski S, (2009) Progression through the RNA polymerase II CTD cycle. Mol Cell 36: 541-546 doi:10.1016/j.molcel.2009.10.019.
-
(2009)
Mol Cell
, vol.36
, pp. 541-546
-
-
Buratowski, S.1
-
16
-
-
84869014886
-
Updating the CTD Story: From Tail to Epic
-
Bartkowiak B, MacKellar AL, Greenleaf AL (2011) Updating the CTD Story: From Tail to Epic. Genet Res Int 2011: 623718. Available:http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=22567360&retmode=ref&cmd=prlinks.
-
(2011)
Genet Res Int 2011
, pp. 623718
-
-
Bartkowiak, B.1
MacKellar, A.L.2
Greenleaf, A.L.3
-
17
-
-
0035089793
-
A compromised yeast RNA polymerase II enhances UV sensitivity in the absence of global genome nucleotide excision repair
-
Wong JM, Ingles CJ (2001) A compromised yeast RNA polymerase II enhances UV sensitivity in the absence of global genome nucleotide excision repair. Mol Gen Genet 264: 842-851. Available:http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=Retrieve&list_uids=11254132&dopt=abstractplus.
-
(2001)
Mol Gen Genet
, vol.264
, pp. 842-851
-
-
Wong, J.M.1
Ingles, C.J.2
-
18
-
-
0033615705
-
Phospho-carboxyl-terminal domain binding and the role of a prolyl isomerase in pre-mRNA 3'-End formation
-
Morris DP, Phatnani HP, Greenleaf AL, (1999) Phospho-carboxyl-terminal domain binding and the role of a prolyl isomerase in pre-mRNA 3'-End formation. J Biol Chem 274: 31583-31587.
-
(1999)
J Biol Chem
, vol.274
, pp. 31583-31587
-
-
Morris, D.P.1
Phatnani, H.P.2
Greenleaf, A.L.3
-
19
-
-
0031036674
-
Role of the casein kinase I isoform, Hrr25, and the cell cycle-regulatory transcription factor, SBF, in the transcriptional response to DNA damage in Saccharomyces cerevisiae
-
Ho Y, Mason S, Kobayashi R, Hoekstra M, Andrews B, (1997) Role of the casein kinase I isoform, Hrr25, and the cell cycle-regulatory transcription factor, SBF, in the transcriptional response to DNA damage in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 94: 581-586.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 581-586
-
-
Ho, Y.1
Mason, S.2
Kobayashi, R.3
Hoekstra, M.4
Andrews, B.5
-
20
-
-
10844238946
-
Expanding the functional repertoire of CTD kinase I and RNA polymerase II: novel phosphoCTD-associating proteins in the yeast proteome
-
doi 10.1021/bi048364h
-
Phatnani HP, Jones JC, Greenleaf AL, (2004) Expanding the functional repertoire of CTD kinase I and RNA polymerase II: novel phosphoCTD-associating proteins in the yeast proteome. Biochemistry 43: 15702-15719 doi:10.1021/bi048364h.
-
(2004)
Biochemistry
, vol.43
, pp. 15702-15719
-
-
Phatnani, H.P.1
Jones, J.C.2
Greenleaf, A.L.3
-
21
-
-
30744447233
-
Role of RNA polymerase II carboxy terminal domain phosphorylation in DNA damage response
-
Jeong S-J, Kim H-J, Yang Y-J, Seol J-H, Jung B-Y, et al. (2005) Role of RNA polymerase II carboxy terminal domain phosphorylation in DNA damage response. J Microbiol 43: 516-522.
-
(2005)
J Microbiol
, vol.43
, pp. 516-522
-
-
Jeong, S.-J.1
Kim, H.-J.2
Yang, Y.-J.3
Seol, J.-H.4
Jung, B.-Y.5
-
22
-
-
0036690387
-
Hyperphosphorylated C-terminal repeat domain-associating proteins in the nuclear proteome link transcription to DNA/chromatin modification and RNA processing
-
Carty SM, Greenleaf AL, (2002) Hyperphosphorylated C-terminal repeat domain-associating proteins in the nuclear proteome link transcription to DNA/chromatin modification and RNA processing. Mol Cell Proteomics 1: 598-610.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 598-610
-
-
Carty, S.M.1
Greenleaf, A.L.2
-
23
-
-
0038449141
-
PARP-1, a determinant of cell survival in response to DNA damage
-
Bouchard VJ, Rouleau M, Poirier GG (2003) PARP-1, a determinant of cell survival in response to DNA damage. Experimental hematology 31: 446-454. Available:http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VP8-48WFCC2-3&_user=38557&_coverDate=06%2F30%2F2003&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000004358&_version=1&_urlVersion=0&_userid=38557&md5=48e1bf470f5ce10574ed738df3faeb68&searchtype=a.
-
(2003)
Experimental hematology
, vol.31
, pp. 446-454
-
-
Bouchard, V.J.1
Rouleau, M.2
Poirier, G.G.3
-
24
-
-
33745225169
-
Poly(ADP-ribose) polymerase-1 activation during DNA damage and repair
-
Dantzer F, Amé J-C, Schreiber V, Nakamura J, Ménissier-de Murcia J,et al. (2006) Poly(ADP-ribose) polymerase-1 activation during DNA damage and repair. Meth Enzymol 409: 493-510. Available:http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B7CV2-4K77K52-11&_user=38557&_coverDate=12%2F31%2F2006&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000004358&_version=1&_urlVersion=0&_userid=38557&md5=ef035212982b5e757cca86e4ead7840e&searchtype=a.
-
(2006)
Meth Enzymol
, vol.409
, pp. 493-510
-
-
Dantzer, F.1
Amé, J.-C.2
Schreiber, V.3
Nakamura, J.4
Ménissier-de Murcia, J.5
-
25
-
-
77958595004
-
RECQ5 helicase associates with the C-terminal repeat domain of RNA polymerase II during productive elongation phase of transcription
-
doi 10.1093/nar/gkq697
-
Kanagaraj R, Huehn D, Mackellar A, Menigatti M, Zheng L, et al. (2010) RECQ5 helicase associates with the C-terminal repeat domain of RNA polymerase II during productive elongation phase of transcription. Nucleic Acids Res 38: 8131-8140 doi:10.1093/nar/gkq697.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 8131-8140
-
-
Kanagaraj, R.1
Huehn, D.2
Mackellar, A.3
Menigatti, M.4
Zheng, L.5
-
26
-
-
77953617720
-
The phosphoCTD-interacting domain of Topoisomerase I
-
doi 10.1016/j.bbrc.2010.05.081
-
Wu J, Phatnani HP, Hsieh T-S, Greenleaf AL, (2010) The phosphoCTD-interacting domain of Topoisomerase I. Biochem Biophys Res Commun. 397: 117-119 doi:10.1016/j.bbrc.2010.05.081.
-
(2010)
Biochem Biophys Res Commun
, vol.397
, pp. 117-119
-
-
Wu, J.1
Phatnani, H.P.2
Hsieh, T.-S.3
Greenleaf, A.L.4
-
27
-
-
23744455164
-
Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability
-
doi 10.1016/j.cell.2005.06.008
-
Li X, Manley JL, (2005) Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability. CELL 122: 365-378 doi:10.1016/j.cell.2005.06.008.
-
(2005)
CELL
, vol.122
, pp. 365-378
-
-
Li, X.1
Manley, J.L.2
-
28
-
-
33644778778
-
A DNA Integrity Network in the Yeast Saccharomyces cerevisiae
-
doi 10.1016/j.cell.2005.12.036
-
Pan X, Ye P, Yuan DS, Wang X, Bader JS, et al. (2006) A DNA Integrity Network in the Yeast Saccharomyces cerevisiae. CELL 124: 1069-1081 doi:10.1016/j.cell.2005.12.036.
-
(2006)
CELL
, vol.124
, pp. 1069-1081
-
-
Pan, X.1
Ye, P.2
Yuan, D.S.3
Wang, X.4
Bader, J.S.5
-
29
-
-
0035733710
-
Genes required for ionizing radiation resistance in yeast
-
doi 10.1038/ng778
-
Bennett CB, Lewis LK, Karthikeyan G, Lobachev KS, Jin YH, et al. (2001) Genes required for ionizing radiation resistance in yeast. Nat Genet 29: 426-434 doi:10.1038/ng778.
-
(2001)
Nat Genet
, vol.29
, pp. 426-434
-
-
Bennett, C.B.1
Lewis, L.K.2
Karthikeyan, G.3
Lobachev, K.S.4
Jin, Y.H.5
-
30
-
-
13744256106
-
Cell cycle progression in G1 and S phases is CCR4 dependent following ionizing radiation or replication stress in Saccharomyces cerevisiae
-
Westmoreland TJ, Marks JR, Olson JA, Thompson EM, Resnick MA, et al. (2004) Cell cycle progression in G1 and S phases is CCR4 dependent following ionizing radiation or replication stress in Saccharomyces cerevisiae. Eukaryotic Cell 3: 430-446.
-
(2004)
Eukaryotic Cell
, vol.3
, pp. 430-446
-
-
Westmoreland, T.J.1
Marks, J.R.2
Olson, J.A.3
Thompson, E.M.4
Resnick, M.A.5
-
31
-
-
0037668072
-
Use of a genome-wide approach to identify new genes that control resistance of Saccharomyces cerevisiae to ionizing radiation
-
Game JC, Birrell GW, Brown JA, Shibata T, Baccari C,et al. (2003) Use of a genome-wide approach to identify new genes that control resistance of Saccharomyces cerevisiae to ionizing radiation. Radiation research 160: 14-24. Available:http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=12816519&retmode=ref&cmd=prlinks.
-
(2003)
Radiation research
, vol.160
, pp. 14-24
-
-
Game, J.C.1
Birrell, G.W.2
Brown, J.A.3
Shibata, T.4
Baccari, C.5
-
32
-
-
67149107074
-
Comparative genome-wide screening identifies a conserved doxorubicin repair network that is diploid specific in Saccharomyces cerevisiae
-
doi 10.1371/journal.pone.0005830
-
Westmoreland TJ, Wickramasekara SM, Guo AY, Selim AL, Winsor TS, et al. (2009) Comparative genome-wide screening identifies a conserved doxorubicin repair network that is diploid specific in Saccharomyces cerevisiae. PLoS ONE 4: e5830 doi:10.1371/journal.pone.0005830.
-
(2009)
PLoS ONE
, vol.4
-
-
Westmoreland, T.J.1
Wickramasekara, S.M.2
Guo, A.Y.3
Selim, A.L.4
Winsor, T.S.5
-
33
-
-
0026150865
-
CTD kinase large subunit is encoded by CTK1, a gene required for normal growth of Saccharomyces cerevisiae
-
Lee J-M, Greenleaf AL, (1991) CTD kinase large subunit is encoded by CTK1, a gene required for normal growth of Saccharomyces cerevisiae. Gene Expression 1: 149-167.
-
(1991)
Gene Expression
, vol.1
, pp. 149-167
-
-
Lee, J.-M.1
Greenleaf, A.L.2
-
34
-
-
0035893314
-
Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain
-
doi 10.1101/gad.935901
-
Cho E-J, Kobor MS, Kim M, Greenblatt J, Buratowski S, (2001) Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain. Genes Dev 15: 3319-3329 doi:10.1101/gad.935901.
-
(2001)
Genes Dev
, vol.15
, pp. 3319-3329
-
-
Cho, E.-J.1
Kobor, M.S.2
Kim, M.3
Greenblatt, J.4
Buratowski, S.5
-
35
-
-
1542334001
-
Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing
-
Ahn SH, Kim M, Buratowski S, (2004) Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing. Mol Cell 13: 67-76.
-
(2004)
Mol Cell
, vol.13
, pp. 67-76
-
-
Ahn, S.H.1
Kim, M.2
Buratowski, S.3
-
36
-
-
62549104640
-
Phosphorylation of the Pol II CTD by KIN28 Enhances BUR1/BUR2 Recruitment and Ser2 CTD Phosphorylation Near Promoters
-
doi 10.1016/j.molcel.2009.02.018
-
Qiu H, Hu C, Hinnebusch AG, (2009) Phosphorylation of the Pol II CTD by KIN28 Enhances BUR1/BUR2 Recruitment and Ser2 CTD Phosphorylation Near Promoters. Mol Cell 33: 752-762 doi:10.1016/j.molcel.2009.02.018.
-
(2009)
Mol Cell
, vol.33
, pp. 752-762
-
-
Qiu, H.1
Hu, C.2
Hinnebusch, A.G.3
-
38
-
-
34249041230
-
Exploring genetic interactions and networks with yeast
-
Boone C, Bussey H, Andrews BJ (2007) Exploring genetic interactions and networks with yeast. Nat Rev Genet 8: 437-449. Available:http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=17510664&retmode=ref&cmd=prlinks.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 437-449
-
-
Boone, C.1
Bussey, H.2
Andrews, B.J.3
-
39
-
-
33748046487
-
Selection and analysis of spontaneous reciprocal mitotic cross-overs in Saccharomyces cerevisiae
-
doi 10.1073/pnas.0605778103
-
Barbera MA, Petes TD, (2006) Selection and analysis of spontaneous reciprocal mitotic cross-overs in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 103: 12819-12824 doi:10.1073/pnas.0605778103.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12819-12824
-
-
Barbera, M.A.1
Petes, T.D.2
-
40
-
-
52049108769
-
Mechanisms of Rad52-independent spontaneous and UV-induced mitotic recombination in Saccharomyces cerevisiae
-
Coïc E, Feldman T, Landman AS, Haber JE (2008) Mechanisms of Rad52-independent spontaneous and UV-induced mitotic recombination in Saccharomyces cerevisiae. Genetics 179: 199-211. Available:http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=18458103&retmode=ref&cmd=prlinks.
-
(2008)
Genetics
, vol.179
, pp. 199-211
-
-
Coïc, E.1
Feldman, T.2
Landman, A.S.3
Haber, J.E.4
-
41
-
-
84859615806
-
High-resolution genome-wide analysis of irradiated (UV and γ-rays) diploid yeast cells reveals a high frequency of genomic loss of heterozygosity (LOH) events
-
doi 10.1534/genetics.111.137927
-
St Charles J, Hazkani-Covo E, Yin Y, Andersen SL, Dietrich FS, et al. (2012) High-resolution genome-wide analysis of irradiated (UV and γ-rays) diploid yeast cells reveals a high frequency of genomic loss of heterozygosity (LOH) events. Genetics 190: 1267-1284 doi:10.1534/genetics.111.137927.
-
(2012)
Genetics
, vol.190
, pp. 1267-1284
-
-
St Charles, J.1
Hazkani-Covo, E.2
Yin, Y.3
Andersen, S.L.4
Dietrich, F.S.5
-
42
-
-
33751369521
-
The role of DNA double-strand breaks in spontaneous homologous recombination in S. cerevisiae
-
doi 10.1371/journal.pgen.0020194
-
Lettier G, Feng Q, de Mayolo AA, Erdeniz N, Reid RJD, et al. (2006) The role of DNA double-strand breaks in spontaneous homologous recombination in S. cerevisiae. PLoS Genet 2: e194 doi:10.1371/journal.pgen.0020194.
-
(2006)
PLoS Genet
, vol.2
-
-
Lettier, G.1
Feng, Q.2
de Mayolo, A.A.3
Erdeniz, N.4
Reid, R.J.D.5
-
43
-
-
0020527442
-
Multiple mutant analysis of recombination in yeast
-
Malone RE (1983) Multiple mutant analysis of recombination in yeast. Mol Gen Genet 189: 405-412. Available:http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=22567676&retmode=ref&cmd=prlinks.
-
(1983)
Mol Gen Genet
, vol.189
, pp. 405-412
-
-
Malone, R.E.1
-
44
-
-
16244384503
-
A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation
-
doi 10.1128/MCB.25.8.3305-3316.2005
-
Kizer KO, Phatnani HP, Shibata Y, Hall H, Greenleaf AL, et al. (2005) A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation. Mol Cell Biol 25: 3305-3316 doi:10.1128/MCB.25.8.3305-3316.2005.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 3305-3316
-
-
Kizer, K.O.1
Phatnani, H.P.2
Shibata, Y.3
Hall, H.4
Greenleaf, A.L.5
-
45
-
-
29144448731
-
Solution structure of the Set2-Rpb1 interacting domain of human Set2 and its interaction with the hyperphosphorylated C-terminal domain of Rpb1
-
doi 10.1073/pnas.0506350102
-
Li M, Phatnani HP, Guan Z, Sage H, Greenleaf AL, et al. (2005) Solution structure of the Set2-Rpb1 interacting domain of human Set2 and its interaction with the hyperphosphorylated C-terminal domain of Rpb1. Proc Natl Acad Sci USA 102: 17636-17641 doi:10.1073/pnas.0506350102.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 17636-17641
-
-
Li, M.1
Phatnani, H.P.2
Guan, Z.3
Sage, H.4
Greenleaf, A.L.5
-
46
-
-
34250305499
-
NMR assignment of the SRI domain of human Set2/HYPB
-
doi 10.1007/s10858-005-4690-8
-
Li M, Phatnani HP, Greenleaf AL, Zhou P, (2006) NMR assignment of the SRI domain of human Set2/HYPB. Journal of biomolecular NMR 36Suppl 1: 5 doi:10.1007/s10858-005-4690-8.
-
(2006)
Journal of Biomolecular NMR
, vol.36
, pp. 5
-
-
Li, M.1
Phatnani, H.P.2
Greenleaf, A.L.3
Zhou, P.4
-
47
-
-
0036170767
-
Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression
-
Strahl BD, Grant PA, Briggs SD, Sun Z-W, Bone JR, et al. (2002) Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression. Mol Cell Biol 22: 1298-1306.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 1298-1306
-
-
Strahl, B.D.1
Grant, P.A.2
Briggs, S.D.3
Sun, Z.-W.4
Bone, J.R.5
-
48
-
-
9644310314
-
The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II
-
doi 10.1038/nature03041
-
Kim M, Krogan NJ, Vasiljeva L, Rando OJ, Nedea E, et al. (2004) The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II. Nature 432: 517-522 doi:10.1038/nature03041.
-
(2004)
Nature
, vol.432
, pp. 517-522
-
-
Kim, M.1
Krogan, N.J.2
Vasiljeva, L.3
Rando, O.J.4
Nedea, E.5
-
49
-
-
2342453900
-
Multiple protein/protein and protein/RNA interactions suggest roles for yeast DNA/RNA helicase Sen1p in transcription, transcription-coupled DNA repair and RNA processing
-
doi 10.1093/nar/gkh561
-
Ursic D, (2004) Multiple protein/protein and protein/RNA interactions suggest roles for yeast DNA/RNA helicase Sen1p in transcription, transcription-coupled DNA repair and RNA processing. Nucleic Acids Res 32: 2441-2452 doi:10.1093/nar/gkh561.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 2441-2452
-
-
Ursic, D.1
-
50
-
-
84859139467
-
Interactions of Sen1, Nrd1, and Nab3 with Multiple Phosphorylated Forms of the Rpb1 C-Terminal Domain in Saccharomyces cerevisiae
-
doi 10.1128/EC.05320-11
-
Chinchilla K, Rodriguez-Molina JB, Ursic D, Finkel JS, Ansari AZ, et al. (2012) Interactions of Sen1, Nrd1, and Nab3 with Multiple Phosphorylated Forms of the Rpb1 C-Terminal Domain in Saccharomyces cerevisiae. Eukaryotic Cell 11: 417-429 doi:10.1128/EC.05320-11.
-
(2012)
Eukaryotic Cell
, vol.11
, pp. 417-429
-
-
Chinchilla, K.1
Rodriguez-Molina, J.B.2
Ursic, D.3
Finkel, J.S.4
Ansari, A.Z.5
-
51
-
-
77958587420
-
CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1
-
doi 10.1101/gad.1968210
-
Bartkowiak B, Liu P, Phatnani HP, Fuda NJ, Cooper JJ, et al. (2010) CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1. Genes Dev 24: 2303-2316 doi:10.1101/gad.1968210.
-
(2010)
Genes Dev
, vol.24
, pp. 2303-2316
-
-
Bartkowiak, B.1
Liu, P.2
Phatnani, H.P.3
Fuda, N.J.4
Cooper, J.J.5
-
52
-
-
79959838081
-
Integrated genomic analyses of ovarian carcinoma
-
doi 10.1038/nature10166
-
Berchuk CGARN, (2011) Integrated genomic analyses of ovarian carcinoma. Nature 474: 609-615 doi:10.1038/nature10166.
-
(2011)
Nature
, vol.474
, pp. 609-615
-
-
Berchuk, C.G.A.R.N.1
-
53
-
-
84863723010
-
The mutational landscape of lethal castration-resistant prostate cancer
-
doi 10.1038/nature11125
-
Grasso CS, Wu Y-M, Robinson DR, Cao X, Dhanasekaran SM,et al. (2012) The mutational landscape of lethal castration-resistant prostate cancer. Nature: 1-5. doi:10.1038/nature11125.
-
(2012)
Nature
, pp. 1-5
-
-
Grasso, C.S.1
Wu, Y.-M.2
Robinson, D.R.3
Cao, X.4
Dhanasekaran, S.M.5
-
54
-
-
33745066836
-
Loss of parafibromin expression in a subset of parathyroid adenomas
-
doi 10.1677/erc.1.01058
-
Juhlin C, Larsson C, Yakoleva T, Leibiger I, Leibiger B, et al. (2006) Loss of parafibromin expression in a subset of parathyroid adenomas. Endocr Relat Cancer 13: 509-523 doi:10.1677/erc.1.01058.
-
(2006)
Endocr Relat Cancer
, vol.13
, pp. 509-523
-
-
Juhlin, C.1
Larsson, C.2
Yakoleva, T.3
Leibiger, I.4
Leibiger, B.5
-
55
-
-
0034566789
-
Functional analysis of the yeast genome by precise deletion and parallel phenotypic characterization
-
discussion109-11
-
Winzeler EA, Liang H, Shoemaker DD, Davis RW, (2000) Functional analysis of the yeast genome by precise deletion and parallel phenotypic characterization. Novartis Found Symp 229: 105-9-discussion109-11.
-
(2000)
Novartis Found Symp
, vol.229
, pp. 105-109
-
-
Winzeler, E.A.1
Liang, H.2
Shoemaker, D.D.3
Davis, R.W.4
-
56
-
-
0009429756
-
Identification of a nuclear localization signal of a yeast ribosomal protein
-
Moreland RB, Nam HG, Hereford LM, Fried HM, (1985) Identification of a nuclear localization signal of a yeast ribosomal protein. Proc Natl Acad Sci USA 82: 6561-6565.
-
(1985)
Proc Natl Acad Sci USA
, vol.82
, pp. 6561-6565
-
-
Moreland, R.B.1
Nam, H.G.2
Hereford, L.M.3
Fried, H.M.4
-
57
-
-
0024671107
-
A protein kinase that phosphorylates the C-terminal repeat domain of the largest subunit of RNA polymerase II
-
Lee JM, Greenleaf AL, (1989) A protein kinase that phosphorylates the C-terminal repeat domain of the largest subunit of RNA polymerase II. Proc Natl Acad Sci USA 86: 3624-3628.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 3624-3628
-
-
Lee, J.M.1
Greenleaf, A.L.2
-
58
-
-
0346095323
-
Analysis of a mutant histone H3 that perturbs the association of Swi/Snf with chromatin
-
Duina AA, Winston F (2004) Analysis of a mutant histone H3 that perturbs the association of Swi/Snf with chromatin. Mol Cell Biol 24: 561-572. Available:http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=14701730&retmode=ref&cmd=prlinks.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 561-572
-
-
Duina, A.A.1
Winston, F.2
-
59
-
-
0021254428
-
Relationships between a hyper-rec mutation (REM1) and other recombination and repair genes in yeast
-
Malone RE, Hoekstra MF, (1984) Relationships between a hyper-rec mutation (REM1) and other recombination and repair genes in yeast. Genetics 107: 33-48.
-
(1984)
Genetics
, vol.107
, pp. 33-48
-
-
Malone, R.E.1
Hoekstra, M.F.2
-
60
-
-
0001313535
-
The distribution of the numbers of mutants in bacterial populations
-
Lea DE, Coulson CA, (1949) The distribution of the numbers of mutants in bacterial populations. J Genet 49: 246-285.
-
(1949)
J Genet
, vol.49
, pp. 246-285
-
-
Lea, D.E.1
Coulson, C.A.2
-
61
-
-
66349117823
-
Fluctuation AnaLysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis
-
Hall BM, Ma C-X, Liang P, Singh KK (2009) Fluctuation AnaLysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis. Bioinformatics 25: 1564-1565. Available:http://bioinformatics.oxfordjournals.org/content/25/12/1564.
-
(2009)
Bioinformatics
, vol.25
, pp. 1564-1565
-
-
Hall, B.M.1
Ma, C.-X.2
Liang, P.3
Singh, K.K.4
|