-
1
-
-
33751059692
-
The marine viromes of four oceanic regions
-
doi:10.1371/journal.pbio.0040368
-
Angly, F., Felts, B., Breibart, M., Salamon, P., Edwards, R. A., Carlson, C. A., et al. (2006). The marine viromes of four oceanic regions. PLoS Biol. 4:e368. doi:10.1371/journal.pbio.0040368
-
(2006)
PLoS Biol
, vol.4
-
-
Angly, F.1
Felts, B.2
Breibart, M.3
Salamon, P.4
Edwards, R.A.5
Carlson, C.A.6
-
2
-
-
84864462144
-
METAGENassist: a comprehensive web server for comparative metagenomics
-
Arndt, D., Xia, J. G., Liu, Y. F., Zhou, Y., Guo, A. C., Cruz, J. A., et al. (2012). METAGENassist: a comprehensive web server for comparative metagenomics. Nucleic Acids Res. 40, W88-W95.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Arndt, D.1
Xia, J.G.2
Liu, Y.F.3
Zhou, Y.4
Guo, A.C.5
Cruz, J.A.6
-
3
-
-
40549120596
-
The RAST server: rapid annotations using subsystems technology
-
doi:10.1186/1471-2164-9-75
-
Aziz, R. K., Bartels, D., Best, A. A., Dejongh, M., Disz, T., Edwards, R. A., et al. (2008). The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75. doi:10.1186/1471-2164-9-75
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
Dejongh, M.4
Disz, T.5
Edwards, R.A.6
-
4
-
-
58149291858
-
Metagenomic and stable iso-topic analyses of modern freshwater microbialites in Cuatro CiEne-gas
-
Breitbart, M., Hoare, A., Nitti, A., Siefert, J., Haynes, M., Dinsdale, E., et al. (2009). Metagenomic and stable iso-topic analyses of modern freshwater microbialites in Cuatro CiEne-gas, Mexico. Environ. Microbiol. 11, 16-34.
-
(2009)
Mexico. Environ. Microbiol.
, vol.11
, pp. 16-34
-
-
Breitbart, M.1
Hoare, A.2
Nitti, A.3
Siefert, J.4
Haynes, M.5
Dinsdale, E.6
-
5
-
-
0035478854
-
Random forests
-
Brieiman, L. (2001). Random forests. Mach. Learn. 45, 5-32.
-
(2001)
Mach. Learn.
, vol.45
, pp. 5-32
-
-
Brieiman, L.1
-
6
-
-
0003802343
-
-
Boco Raton: Chapman and Hall CRC
-
Brieiman, L., Friedman, J. M., Stone, C. J., and Olshen, R. A. (1984). Classibication and Regression Trees. Boco Raton: Chapman and Hall CRC.
-
(1984)
Classibication and Regression Trees
-
-
Brieiman, L.1
Friedman, J.M.2
Stone, C.J.3
Olshen, R.A.4
-
7
-
-
60549114321
-
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
-
Brulc, J. M., Antonopoulos, D. A., Miller, M. E. B., Wilson, M. K., Yannarell, A. C., Dinsdale, E. A., et al. (2009). Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc. Natl. Acad. Sci. U.S.A. 106, 1948-1953.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 1948-1953
-
-
Brulc, J.M.1
Antonopoulos, D.A.2
Miller, M.E.B.3
Wilson, M.K.4
Yannarell, A.C.5
Dinsdale, E.A.6
-
8
-
-
0011153447
-
Multivariate regres sion trees: a new technique for modeling species-environment relationships
-
De'ath, G. (2002). Multivariate regres sion trees: a new technique for modeling species-environment relationships. Ecology 83, 1105-1117.
-
(2002)
Ecology
, vol.83
, pp. 1105-1117
-
-
De'ath, G.1
-
9
-
-
0033749212
-
Classification and regression trees: a powerful yet simple technique for ecological data analysis
-
De'ath, G., and Fabricius, K. E. (2000). Classification and regression trees: a powerful yet simple technique for ecological data analysis. Ecology 81, 3178-3192.
-
(2000)
Ecology
, vol.81
, pp. 3178-3192
-
-
De'ath, G.1
Fabricius, K.E.2
-
10
-
-
41649109613
-
Functional metagenomic profiling of nine bio-mes
-
Dinsdale, E. A., Edwards, R. A., Hall, D., Angly, F., Breitbart, M., Brulc, J. M., et al. (2008a). Functional metagenomic profiling of nine bio-mes. Nature 452, U628-U629.
-
(2008)
Nature
, vol.452
-
-
Dinsdale, E.A.1
Edwards, R.A.2
Hall, D.3
Angly, F.4
Breitbart, M.5
Brulc, J.M.6
-
11
-
-
40149098974
-
Microbial ecology of four coral atolls in the northern line islands
-
doi:10.1371/journal.pone.0001584
-
Dinsdale, E. A., Pantos, O., Smriga, S., Edwards, R. A., Wegley, L., Angly, E, et al. (2008b). Microbial ecology of four coral atolls in the northern line islands. PLoS ONE 3:e1584. doi:10.1371/journal.pone.0001584
-
(2008)
PLoS ONE
, vol.3
-
-
Dinsdale, E.A.1
Pantos, O.2
Smriga, S.3
Edwards, R.A.4
Wegley, L.5
Angly, E.6
-
12
-
-
84870854663
-
Real time metagenomics: using k-mers to annotate metagenomes
-
Edwards, R. A., Olson, R., Disz, T., Pusch, G. D., Vonstein, V., Stevens, R., et al. (2012). Real time metagenomics: using k-mers to annotate metagenomes. Bioinformatics 28, 3316-3317.
-
(2012)
Bioinformatics
, vol.28
, pp. 3316-3317
-
-
Edwards, R.A.1
Olson, R.2
Disz, T.3
Pusch, G.D.4
Vonstein, V.5
Stevens, R.6
-
13
-
-
0000764772
-
The use of multiple measurements in taxo-nomic problems
-
Fisher, R. A. (1936). The use of multiple measurements in taxo-nomic problems. Ann. Eugen 7, 179-188.
-
(1936)
Ann. Eugen
, vol.7
, pp. 179-188
-
-
Fisher, R.A.1
-
14
-
-
80052054573
-
Connecting genotype to phenotype in the era of high-throughput sequencing
-
Henry, C. S., Overbeek, R., Xia, F. F., Best, A. A., Glass, E., Gilbert, J., et al. (2011). Connecting genotype to phenotype in the era of high-throughput sequencing. Biochim. Biophys. Acta1810, 967-977.
-
(2011)
Biochim. Biophys. Acta1810
, pp. 967-977
-
-
Henry, C.S.1
Overbeek, R.2
Xia, F.F.3
Best, A.A.4
Glass, E.5
Gilbert, J.6
-
15
-
-
38449088143
-
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
-
Kurokawa, K., Itoh, T., Kuwahara, T., Oshima, K., Toh, H., Toyoda, A., et al. (2007). Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNARes. 14, 169-181.
-
(2007)
DNARes
, vol.14
, pp. 169-181
-
-
Kurokawa, K.1
Itoh, T.2
Kuwahara, T.3
Oshima, K.4
Toh, H.5
Toyoda, A.6
-
18
-
-
69249152571
-
Bacteriophages encode factors required for protection in a symbiotic mutualism
-
Oliver, K., Degnan, P., Hunter, M., and Moran, N. (2009). Bacteriophages encode factors required for protection in a symbiotic mutualism. Science 325, 992-994.
-
(2009)
Science
, vol.325
, pp. 992-994
-
-
Oliver, K.1
Degnan, P.2
Hunter, M.3
Moran, N.4
-
19
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
Overbeek, R., Begley, T., Butler, R. M., Choudhuri, J. V., Chuang, H. Y., Cohoon, M., et al. (2005). The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 33, 5691-5702.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
Choudhuri, J.V.4
Chuang, H.Y.5
Cohoon, M.6
-
20
-
-
77951945504
-
Identifying biologically relevant differences between metage-nomic communities
-
Parks, D. H., and Beiko, R. G. (2010). Identifying biologically relevant differences between metage-nomic communities. Bioinformatics 26,715-721.
-
(2010)
Bioinformatics
, vol.26
, pp. 715-721
-
-
Parks, D.H.1
Beiko, R.G.2
-
22
-
-
35348933745
-
Multivariate analyses in microbial ecology
-
Ramette, A. (2007). Multivariate analyses in microbial ecology. FEMS Microbiol. Ecol. 62, 142-160.
-
(2007)
FEMS Microbiol. Ecol.
, vol.62
, pp. 142-160
-
-
Ramette, A.1
-
23
-
-
77954627922
-
Viruses in the faecal microbiota of monozygotic twins and their mothers
-
Reyes, A., Haynes, M., Hanson, N., Angly, E E., Heath, A. C., Rohwer, E, et al. (2010). Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature 466, U334-U381.
-
(2010)
Nature
, vol.466
-
-
Reyes, A.1
Haynes, M.2
Hanson, N.3
Angly, E.E.4
Heath, A.C.5
Rohwer, E.6
-
24
-
-
33744784298
-
An application of statistics to comparative metagenomics
-
doi:10.1186/1471-2105-7-162
-
Rodriguez-Brito, B., Rohwer, F., and Edwards, R. (2006). An application of statistics to comparative metagenomics. BMC Bioinformatics 7:162. doi:10.1186/1471-2105-7-162
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 162
-
-
Rodriguez-Brito, B.1
Rohwer, F.2
Edwards, R.3
-
25
-
-
0023453329
-
Silhouettes -a graphical aid to the interpretation and validation of cluster-analysis
-
Rousseeuw, P. J. (1987). Silhouettes -a graphical aid to the interpretation and validation of cluster-analysis. J. Comput. Appl. Math. 20, 53-65.
-
(1987)
J. Comput. Appl. Math.
, vol.20
, pp. 53-65
-
-
Rousseeuw, P.J.1
-
26
-
-
33645573203
-
Unsu-pervised learning with random forest predictors
-
Shi, T., and Horvath, S. (2006). Unsu-pervised learning with random forest predictors. J. Comput. Graph Stat. 15,118-138.
-
(2006)
J. Comput. Graph Stat.
, vol.15
, pp. 118-138
-
-
Shi, T.1
Horvath, S.2
-
27
-
-
84872930374
-
"Towards a reference terminology for ontology research and development in the biomedical domain," in Proceedings of KR-MED, ed. O. Bodenreider
-
Smith, B., Kusnierczyk, W., Schober, D., Ceusters, S., and Werner, C. (2006). "Towards a reference terminology for ontology research and development in the biomedical domain," in Proceedings of KR-MED, ed. O. Bodenreider, Baltimore, 57-66.
-
(2006)
Baltimore
, pp. 57-66
-
-
Smith, B.1
Kusnierczyk, W.2
Schober, D.3
Ceusters, S.4
Werner, C.5
-
29
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe,S.G.,Von Mering, C., Kobayashi, A., Salamov, A. A., Chen, K., Chang, H. W., et al. (2005). Comparative metagenomics of microbial communities. Science 308, 544-557.
-
(2005)
Science
, vol.308
, pp. 544-557
-
-
Tringe, S.G.1
Von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
Chang, H.W.6
-
30
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh, P. J., Hamady, M., Yat-sunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., et al. (2009). A core gut microbiome in obese and lean twins. Nature 457, U480-U487.
-
(2009)
Nature
, vol.457
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yat-sunenko, T.3
Cantarel, B.L.4
Duncan, A.5
Ley, R.E.6
-
31
-
-
35348968286
-
The human microbiome project
-
Turnbaugh, P. J., Ley, R. E., Hamady, M., Fraser-Liggett, C. M., Knight, R., and Gordon, J. I. (2007). The human microbiome project. Nature 449,804-810.
-
(2007)
Nature
, vol.449
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
Knight, R.5
Gordon, J.I.6
-
33
-
-
35148876440
-
Metagenomic analysis of the microbial community associated with the coral Porites astreoides
-
Wegley, L., Edwards, R. A., Rodriguez-Brito, B., Liu, H., and Rohwer, E (2007). Metagenomic analysis of the microbial community associated with the coral Porites astreoides. Environ. Microbiol. 9, 2707-2719.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 2707-2719
-
-
Wegley, L.1
Edwards, R.A.2
Rodriguez-Brito, B.3
Liu, H.4
Rohwer, E.5
-
34
-
-
77649200259
-
A primer on metagenomics
-
doi:10.1371/journal.pcbi.1000667
-
Wooley, J. C., Godzik, A., and Friedberg, I. (2010). A primer on metagenomics. PLoS Comput. Biol. 6:e 1000667. doi:10.1371/journal.pcbi.1000667
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Wooley, J.C.1
Godzik, A.2
Friedberg, I.3
|