Real Time Metagenomics: Using k-mers to annotate metagenomes

Bioinformatics

Volumn 28, Issue 24, 2012, Pages 3316-3317

  Edwards, Robert A ^a,b,c   Olson, Robert ^a,d   Disz, Terry ^a,d   Pusch, Gordon D ^a,d   Vonstein, Veronika ^e   Stevens, Rick ^a,d   Overbeek, Ross ^e  

^a ARGONNE NATIONAL LABORATORY   (United States)

^b SAN DIEGO STATE UNIVERSITY   (United States)

^c San Diego State University   (United States)

^d UNIVERSITY OF CHICAGO   (United States)

^e Fellowship for Interpretation of Genomes   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; DNA SEQUENCE; METAGENOME; METAGENOMICS; METHODOLOGY; MOLECULAR GENETICS;

ALGORITHMS; METAGENOME; METAGENOMICS; MOLECULAR SEQUENCE ANNOTATION; SEQUENCE ANALYSIS, DNA;

EID: 84870854663     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts599     Document Type: Article

References (7)

1. Angly, F.E. et al. (2012) Grinder: a versatile amplicon and shotgun sequence simulator. Nucleic Acids Res., 40, e94.
2. Dinsdale, E.A. et al. (2008) Functional metagenomic profiling of nine biomes. Nature, 452, 629-632.
3. Meyer, F. et al. (2009) FIGfams: yet another set of protein families. Nucleic Acids Res., 37, 6643-6654.
4. Meyer, F. et al. (2008) The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics, 9, 386.
5. Overbeek, R. et al. (2005) The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res., 33, 5691-5702.
6. Wilkening, J. et al. (2009) Using clouds for metagenomics: a case study. In IEEE International Conference on Cluster Computing and Workshops. pp. 1-6.
7. Wommack, K.E. et al. (2008) Metagenomics: read length matters. Appl. Environ. Microbiol., 74, 1453-1463.