Response of intestinal microbiota to antibiotic growth promoters in Chickens

Foodborne Pathogens and Disease

Volumn 10, Issue 4, 2013, Pages 331-337

  Lin, Jun ^a   Hunkapiller, Andree A ^a   Layton, Alice C ^a   Chang, Yun Juan ^a   Robbins, Kelly R ^a  

^a UNIVERSITY OF TENNESSEE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA 16S; FATTY ACID; GROWTH PROMOTOR; TYLOSIN;

ANIMAL EXPERIMENT; ARTICLE; BIOMASS; CHICKEN; DRUG EFFECT; FIRMICUTES; ILEUM; INTESTINE FLORA; LACTOBACILLUS; MICROBIAL POPULATION DYNAMICS; NONHUMAN; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

ANIMAL FEED; ANIMALS; ANTI-BACTERIAL AGENTS; BACTERIA; CHICKENS; DNA, BACTERIAL; GENE LIBRARY; INTESTINES; LACTOBACILLUS; METAGENOME; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; TYLOSIN; WEIGHT GAIN;

ANIMALIA; BACTERIA (MICROORGANISMS); FIRMICUTES; GALLUS GALLUS; LACTOBACILLUS;

EID: 84876140625     PISSN: 15353141     EISSN: 15567125     Source Type: Journal    
DOI: 10.1089/fpd.2012.1348     Document Type: Article

References (39)

1. Acosta-Martinez V, Dowd S, Sun Y, Allen V. Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use. Soil Biol Biochem 2008;40:2762-2770.
2. Báckhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI. Host-bacterial mutualism in the human intestine. Science 2005;307:1915-1920.
3. Begley M, Hill C, Gahan CG. Bile salt hydrolase activity in probiotics. Appl Environ Microbiol 2006;72:1729-1738.
4. Bossio DA, Scow KM. Impacts of carbon and flooding on soil microbial communities: Phospholipid fatty acid profiles and substrate utilization patterns. Microb Ecol 1998;35:265-278.
5. Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM. The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis. Nucleic Acids Res 2009;37:D141- D145.
6. Collier CT, Smiricky-Tjardes MR, Albin DM, Wubben JE, Gabert VM, Deplancke B, Bane D, Anderson DB, Gaskins HR. Molecular ecological analysis of porcine ileal microbiota responses to antimicrobial growth promoters. J Anim Sci 2003; 81:3035-3045.
7. Danzeisen JL, Kim HB, Isaacson RE, Tu ZJ, Johnson TJ. Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment. PLoS One 2011;6:e27949.
8. Dibner JJ, Richards JD. Antibiotic growth promoters in agriculture: History and mode of action. Poult Sci 2005;84:634-643.
9. Dumonceaux TJ, Hill JE, Hemmingsen SM, Van Kessel AG. Characterization of intestinal microbiota and response to dietary virginiamycin supplementation in the broiler chicken. Appl Environ Microbiol 2006;72:2815-2823.
10. Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M, Gill SR, Nelson KE, Relman DA. Diversity of the human intestinal microbial flora. Science 2005;308:1635-1638.
11. Engberg RM, Hedemann MS, Leser TD, Jensen BB. Effect of zinc bacitracin and salinomycin on intestinal microflora and performance of broilers. Poult Sci 2000;79:1311-1319.
12. Frost AJ, Woolcock JB. Antibiotics and animal production. In: Microbiology of Animals and Animal Products. Woolcock JB (ed.). New York: Elsevier, 1991, pp. 181-194.
13. Frostegard A, Tunlid A, Baath E. Phospholipid fatty acid composition, biomass, and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Appl Environ Microbiol 1993;59:3605-3617.
14. Gaskins HR, Collier CT, Anderson DB. Antibiotics as growth promotants: Mode of action. Anim Biotechnol 2002;13:29-42.
15. Guban J, Korver DR, Allison GE, Tannock GW. Relationship of dietary antimicrobial drug administration with broiler performance, decreased population levels of Lactobacillus salivarius, and reduced bile salt deconjugation in the ileum of broiler chickens. Poult Sci 2006;85:2186-2194.
16. Guckert JB, Antworth CP, Nichols PD, White DC. Phospholipid, ester-linked fatty-acid profiles as reproducible assays for changes in prokaryotic community structure of estuarine sediments. FEMS Microbiol Ecol 1985;31:147-158.
17. Harwood JL, Russell NJ. Lipids in Plants and Microbes. London: George, Allen & Unwin, 1984.
18. He Z, Deng Y, Van Nostrand JD, Tu Q, Xu M, Hemme CL, Li X, Wu L, Gentry TJ, Yin Y, Liebich J, Hazen TC, Zhou J. GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME J 2010;4:1167-1179.
19. Kim HB, Borewicz K, White BA, Singer RS, Sreevatsan S, Tu ZJ, Isaacson RE. Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin. Proc Natl Acad Sci USA 2012;109:15484-15490.
20. Knarreborg A, Simon MA, Engberg RM, Jensen BB, Tannock GW. Effects of dietary fat source and subtherapeutic levels of antibiotic on the bacterial community in the ileum of broiler chickens at various ages. Appl Environ Microbiol 2002;68:5918-5924.
21. Lane DJ. 16S/23S rRNA sequencing. In: Nucleic Acid Techniques in Bacterial Systematics. Stackebrandt E, Goodfellow M (eds.). New York: John Wiley and Sons, 1991, pp. 115-148.
22. La-ongkhum O, Pungsungvorn N, Amornthewaphat N, Nitisinprasert S. Effect of the antibiotic acilamycin on the structure of the microbial community in the jejunal intestinal tract of broiler chickens. Poult Sci 2011;90:1532-1538.
23. Layton AC, Karanth PN, Lajoie CA, Meyers AJ, Gregory IR, Stapleton RD, Taylor DE, Sayler GS. Quantification of Hyphomicrobium populations in activated sludge from an industrial wastewater treatment system as determined by 16S rRNA analysis. Appl Environ Microbiol 2000;66:1167-1174.
24. Lin J, Yan M, Sahin O, Pereira S, Chang YJ, Zhang Q. Effect of macrolide usage on emergence of erythromycin-resistant Campylobacter isolates in chickens. Antimicrob Agents Chemother 2007;51:1678-1686.
25. Marshall BM, Levy SB. Food animals and antimicrobials: Impacts on human health. Clin Microbiol Rev 2011;24:718-733.
26. Pennanen T, Frostegard A, Fritze H, Baath E. Phospholipid fatty acid composition and heavy metal tolerance of soil microbial communities along two heavy metal-polluted gradients in coniferous forests. Appl Environ Microbiol 1996;62:420-428.
27. Pinkert HC, Ringelberg DB, Piceno YM, Macnaughton SJ, White DC. Biochemical approaches to biomass measurements and community structure analysis. In: Manual of Environmental Microbiology. Stahl DE, Knudsen GR, McInerney MJ, Stezenbach LD, Walter MV (eds.). Washington, DC: American Society for Microbiology, 2002, pp. 101-113.
28. Ridlon JM, Kang DJ, Hylemon PB. Bile salt biotransformations by human intestinal bacteria. J Lipid Res 2006;47:241-259.
29. Scupham AJ, Presley LL, Wei B, Bent E, Griffith N, McPherson M, Zhu F, Oluwadara O, Rao N, Braun J, Borneman J. Abundant and diverse fungal microbiota in the murine intestine. Appl Environ Microbiol 2006;72:793-801.
30. Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006;444:1027-1031.
31. Waldroup PW, Yan F, Keen CA, Zhang KY. Antibiotics may still have use in broiler production. Feedstuffs 2005;4:28-33.
32. Wegener HC. Antibiotics in animal feed and their role in resistance development. Curr Opin Microbiol 2003;6:439-445.
33. Weimer PJ. Manipulating ruminal fermentation: A microbial ecological perspective. J Anim Sci 1998;76:3114-3122.
34. Wells GB, Dickson RC, Lester RL. Isolation and composition of inositolphosphorylceramide-type sphingolipids of hyphal forms of Candida albicans. J Bacteriol 1996;178:6223-6226.
35. White DC, Davis WM, Nickels JS, King JD, Bobbie RJ. Determination of the sedimentary microbial biomass by extractable lipid phosphate. Oecologia 1979;40:51-62.
36. White DC, Ringelberg D, Macnaughton S, Alugupalli DS. Signature lipid biomarker analysis for quantitative assessment in situ of environmental microbial ecology. In: Molecular Markers in Environmental Geochemistry. Eganhouse RP (ed.). Washington, DC: American Chemical Society, 1997, pp. 22-34.
37. White DC, Ringelberg DB. Signature lipid biomarker analysis. In: Techniques in Microbial Ecology. Burlage RS, Atlas R, Stahl D, Geesey G, Sayler G (eds.). New York: Oxford University Press, 1998, pp. 225-272.
38. Wise MG, Siragusa GR. Quantitative analysis of the intestinal bacterial community in one- to three-week-old commercially reared broiler chickens fed conventional or antibioticfree vegetable-based diets. J Appl Microbiol 2007;102: 1138-1149.
39. Zhou H, Gong J, Brisbin JT, Yu H, Sanei B, Sabour P, Sharif S. Appropriate chicken sample size for identifying the composition of broiler intestinal microbiota affected by dietary antibiotics, using the polymerase chain reaction- denaturing gradient gel electrophoresis technique. Poult Sci 2007;86:2541-2549.