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Volumn 671, Issue , 1997, Pages 22-34

Signature Lipid Biomarker Analysis for Quantitative Assessment in Situ of Environmental Microbial Ecology

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EID: 0345876506     PISSN: 00976156     EISSN: None     Source Type: Book Series    
DOI: 10.1021/bk-1997-0671.ch002     Document Type: Article
Times cited : (31)

References (40)
  • 1
    • 0002301592 scopus 로고
    • Analysis of microorganisms in terms of quantity and activity in natural environments
    • J.H. Slater, R. Whittenbury and J.W.T. Wimpenny Eds.; Society for General Microbiology Symposium
    • White, D.C. Analysis of microorganisms in terms of quantity and activity in natural environments. In Microbes in their natural environments; J.H. Slater, R. Whittenbury and J.W.T. Wimpenny Eds.; Society for General Microbiology Symposium. 1983, 34, 37-66.
    • (1983) Microbes in Their Natural Environments , vol.34 , pp. 37-66
    • White, D.C.1
  • 2
    • 0022868326 scopus 로고
    • Environmental effects testing with quantitative microbial analysis: Chemical signatures correlated with in situ biofilm analysis by FT/IR
    • White, D.C. Environmental effects testing with quantitative microbial analysis: Chemical signatures correlated with in situ biofilm analysis by FT/IR. Toxicity Assessment. 1986, 1, 315-338.
    • (1986) Toxicity Assessment , vol.1 , pp. 315-338
    • White, D.C.1
  • 3
    • 0002146520 scopus 로고
    • Validation of quantitative analysis for microbial biomass, community structure, and metabolic activity
    • White, D.C. Validation of quantitative analysis for microbial biomass, community structure, and metabolic activity. Advances in Limnology. 1988, 31, 1-18.
    • (1988) Advances in Limnology , vol.31 , pp. 1-18
    • White, D.C.1
  • 4
    • 0000008516 scopus 로고
    • Biochemical analysis of biomass, community structure, nutritional status, and metabolic activity of the microbial communities in soil
    • J-M. Bollag, G. Stotzky, Eds
    • Tunlid, A. and D.C. White. Biochemical analysis of biomass, community structure, nutritional status, and metabolic activity of the microbial communities in soil. In Soil Biochemistry J-M. Bollag, G. Stotzky, Eds; 1991, 7, 229-262.
    • (1991) Soil Biochemistry , vol.7 , pp. 229-262
    • Tunlid, A.1    White, D.C.2
  • 5
    • 84966196942 scopus 로고
    • Viable but non-culturable Vibrio cholerae and related pathogens in the environment: Implications for the release of genetically engineered microorganisms
    • Colwell, R.R., P.R. Brayton, D.J. Grimes, D.B. Rozak, S.A. Huq and L.M. Palmer. Viable but non-culturable Vibrio cholerae and related pathogens in the environment: Implications for the release of genetically engineered microorganisms. Biotechnology. 1985, 3, 817-820.
    • (1985) Biotechnology , vol.3 , pp. 817-820
    • Colwell, R.R.1    Brayton, P.R.2    Grimes, D.J.3    Rozak, D.B.4    Huq, S.A.5    Palmer, L.M.6
  • 6
    • 0001032350 scopus 로고
    • Is there anything else you need to understand about the microbiota that cannot be derived from analysis of nucleic acids?
    • White, D.C. Is there anything else you need to understand about the microbiota that cannot be derived from analysis of nucleic acids? Microb. Ecol. 1994, 28, 163-166.
    • (1994) Microb. Ecol. , vol.28 , pp. 163-166
    • White, D.C.1
  • 7
    • 33645384503 scopus 로고
    • Determination of the sedimentary microbial biomass by extractable lipid phosphate
    • White, D.C. , W.M. Davis, J.S. Nickels, J.D. King andR.J. Bobbie. Determination of the sedimentary microbial biomass by extractable lipid phosphate. Oecologia.. 1979, 40, 51-62.
    • (1979) Oecologia , vol.40 , pp. 51-62
    • White, D.C.1    Davis, W.M.2    Nickels, J.S.3    King, J.D.4    Bobbie, R.J.5
  • 8
    • 0021814257 scopus 로고
    • Determination of microbial fatty acid profiles at femtomolar levels in human urine and the initial marine microfouling community by capillary gas chromatography-chemical ionization mass spectrometry with negative ion detection
    • Odham, G., A. Tunlid, G. Westerdahl, L. Larsson, J.B. Guckert and D.C. White. Determination of microbial fatty acid profiles at femtomolar levels in human urine and the initial marine microfouling community by capillary gas chromatography-chemical ionization mass spectrometry with negative ion detection. J. Microbiol. Methods. 1985, 3, 331-344.
    • (1985) J. Microbiol. Methods , vol.3 , pp. 331-344
    • Odham, G.1    Tunlid, A.2    Westerdahl, G.3    Larsson, L.4    Guckert, J.B.5    White, D.C.6
  • 9
    • 0007939963 scopus 로고
    • Application of artificial neural networks (ANN) to the detection ofMycobacterium tuberculosis, its antibiotic resistance and prediction of pathogenicity amongst Mycobacterium spp. based on signature lipid biomarkers
    • Almeida, J.S., A. Sonesson, D.B. Ringelberg and D.C. White. Application of artificial neural networks (ANN) to the detection ofMycobacterium tuberculosis, its antibiotic resistance and prediction of pathogenicity amongst Mycobacterium spp. based on signature lipid biomarkers. Binary Computing in Microbiology. 1995, 7, 53-59.
    • (1995) Binary Computing in Microbiology , vol.7 , pp. 53-59
    • Almeida, J.S.1    Sonesson, A.2    Ringelberg, D.B.3    White, D.C.4
  • 10
    • 0030497909 scopus 로고    scopus 로고
    • Quantitative Comparisons of in situ Microbial Biodiversity by Signature Biomarker Analysis
    • In press
    • White, D.C., J.O . Stair and D.B. Ringelberg. Quantitative Comparisons of in situ Microbial Biodiversity by Signature Biomarker Analysis. 1996, J. Indust. Microbiol. In press.
    • (1996) J. Indust. Microbiol.
    • White, D.C.1    Stair, J.O..2    Ringelberg, D.B.3
  • 11
    • 0022470933 scopus 로고
    • Determination of monounsaturated fatty acid double-bond position and geometry for microbial monocultures and complex consortia by capillary GC-MS of their dimethyl disulphide adducts
    • Nichols, P.D., J.B. Guckert and D.C. White. Determination of monounsaturated fatty acid double-bond position and geometry for microbial monocultures and complex consortia by capillary GC-MS of their dimethyl disulphide adducts. J. Microbiol. Methods. 1986,. 5, 49-55.
    • (1986) J. Microbiol. Methods , vol.5 , pp. 49-55
    • Nichols, P.D.1    Guckert, J.B.2    White, D.C.3
  • 12
    • 0027272479 scopus 로고
    • Sequential alkaline saponification/ acidhydrolysis/esterification: A one-tube method with enhanced recovery of both cyclopropane and hydroxylated fatty acids
    • Maybery W.M. and J.R. Lane. Sequential alkaline saponification/ acidhydrolysis/esterification: A one-tube method with enhanced recovery of both cyclopropane and hydroxylated fatty acids. J. Microbial Methods. 1993, 18, 21-32.
    • (1993) J. Microbial Methods , vol.18 , pp. 21-32
    • Maybery, W.M.1    Lane, J.R.2
  • 13
    • 0022636111 scopus 로고
    • Signature fatty acids in the polar lipids of acid producing Thiobacilli: Methoxy, cyclopropyl, alpha-hydroxycyclopropyl and branched and normal monoenoic fatty acids
    • Kerger, B.D., P.D. Nichols, C.P. Antworth, W. Sand, E. Bock, J.C. Cox, T.A. Langworthy and D.C. White. Signature fatty acids in the polar lipids of acid producing Thiobacilli: methoxy, cyclopropyl, alpha-hydroxycyclopropyl and branched and normal monoenoic fatty acids. FEMS Microbiol. Ecology 1986, 38, 67-77.
    • (1986) FEMS Microbiol. Ecology , vol.38 , pp. 67-77
    • Kerger, B.D.1    Nichols, P.D.2    Antworth, C.P.3    Sand, W.4    Bock, E.5    Cox, J.C.6    Langworthy, T.A.7    White, D.C.8
  • 14
    • 0026001015 scopus 로고
    • Membrane fatty acids as phenotypic markers in the polyphasic taxonomy of methylotrophs within the proteobacteria
    • Guckert, J.B., D.B. Ringelberg, D.C. White, R.S. Henson and B.J. Bratina. Membrane fatty acids as phenotypic markers in the polyphasic taxonomy of methylotrophs within the proteobacteria. J. Gen. Microbiol. 1991, 137, 2631-2641.
    • (1991) J. Gen. Microbiol. , vol.137 , pp. 2631-2641
    • Guckert, J.B.1    Ringelberg, D.B.2    White, D.C.3    Henson, R.S.4    Bratina, B.J.5
  • 15
    • 0028361475 scopus 로고
    • Comparison of phylogenetic relationships based on phospholipid fatty acid profiles and ribosomal RNA sequence similarities among dissimilatory sulfate-reducing bacteria
    • Kohring, L.L., D.B. Ringelberg, R. Devereux, D. Stahl, M.W. Mittelman and D.C. White. Comparison of phylogenetic relationships based on phospholipid fatty acid profiles and ribosomal RNA sequence similarities among dissimilatory sulfate-reducing bacteria. FEMS Microbiol. Letters. 1994, 119, 303-308.
    • (1994) FEMS Microbiol. Letters , vol.119 , pp. 303-308
    • Kohring, L.L.1    Ringelberg, D.B.2    Devereux, R.3    Stahl, D.4    Mittelman, M.W.5    White, D.C.6
  • 16
    • 0001810963 scopus 로고
    • Spatial distribution of bochemical parameters indicating biomass and community composition of microbial assemblies in estuarine mud flat sediments
    • Federle, T.W., M.A. Hullar, R.J. Livingston, D.A. Meter and D.C. White. Spatial distribution of bochemical parameters indicating biomass and community composition of microbial assemblies in estuarine mud flat sediments. Appl. Environ. Microbiol. 1983, 45, 58-63.
    • (1983) Appl. Environ. Microbiol. , vol.45 , pp. 58-63
    • Federle, T.W.1    Hullar, M.A.2    Livingston, R.J.3    Meter, D.A.4    White, D.C.5
  • 17
    • 0347292134 scopus 로고    scopus 로고
    • Microbial ecology of the deep subsurface: Analysis of ester-linked fatty acids
    • in press
    • Ringelberg, D.B., S. Button, ad D.C. White. Microbial ecology of the deep subsurface: Analysis of ester-linked fatty acids, Microbial Ecology, 1997, in press.
    • (1997) Microbial Ecology
    • Ringelberg, D.B.1    Button, S.2    White, D.C.3
  • 18
    • 0002473895 scopus 로고
    • Equivalence of microbial biomass measures based on membrane lipid and cell wall components, adenosine triphosphate, and direct counts in subsurface sediments
    • Balkwill, D.L., F.R. Leach, J.T. Wilson, J.F. McNabb and D.C. White. Equivalence of microbial biomass measures based on membrane lipid and cell wall components, adenosine triphosphate, and direct counts in subsurface sediments. Microbial Ecology. 1988, 16, 73-84.
    • (1988) Microbial Ecology , vol.16 , pp. 73-84
    • Balkwill, D.L.1    Leach, F.R.2    Wilson, J.T.3    McNabb, J.F.4    White, D.C.5
  • 19
    • 0002071947 scopus 로고    scopus 로고
    • Biomass Measurements: Biochemical Approaches
    • American Society for Microbiology Press, Washington, DC., C. H. Hurst, G. Knudsen, M. McInerney, L. D. Stetzenbach, and M. Walter, Eds; American Society for Microbiology Press, Washington, DC.
    • White, D.C. H.C. Pinkart and D.B. Ringelberg. Biomass Measurements: Biochemical Approaches. In Manual of Environmental Microbiology, 1st Edition, American Society for Microbiology Press, Washington, DC., C. H. Hurst, G. Knudsen, M. McInerney, L. D. Stetzenbach, and M. Walter, Eds; 1996, American Society for Microbiology Press, Washington, DC. pp. 91-101.
    • (1996) Manual of Environmental Microbiology, 1st Edition , pp. 91-101
    • White, D.C.1    Pinkart, H.C.2    Ringelberg, D.B.3
  • 20
    • 0022005606 scopus 로고
    • Extractable and lipopolysaccharide fatty acid and hydroxy acid profiles from Desulfovibrio species
    • Edlund, A., P.D. Nichols, R. Roffey and D.C. White Extractable and lipopolysaccharide fatty acid and hydroxy acid profiles from Desulfovibrio species. J. Lipid Res. 1985, 26, 982-988.
    • (1985) J. Lipid Res. , vol.26 , pp. 982-988
    • Edlund, A.1    Nichols, P.D.2    Roffey, R.3    White, D.C.4
  • 21
    • 0022456145 scopus 로고
    • Phospholipid ester-linked fatty acid biomarkers of acetate-oxidizing sulfate reducers and other sulfide forming bacteria
    • Dowling, N.J.E., F. Widdel and D.C. White. Phospholipid ester-linked fatty acid biomarkers of acetate-oxidizing sulfate reducers and other sulfide forming bacteria. J. Gen. Microbiol. 1986, 132, 1815-1825.
    • (1986) J. Gen. Microbiol. , vol.132 , pp. 1815-1825
    • Dowling, N.J.E.1    Widdel, F.2    White, D.C.3
  • 22
    • 0000928249 scopus 로고
    • Nonselective biochemical methods for the determination of fungal mass and community structure in estuarine detrital microflora
    • White, D.C., R.J. Bobbie, J.S. Nickels, S.D. Fazio and W.M. Davis. Nonselective biochemical methods for the determination of fungal mass and community structure in estuarine detrital microflora. Botanica Marina. 1980, 23, 239-250.
    • (1980) Botanica Marina , vol.23 , pp. 239-250
    • White, D.C.1    Bobbie, R.J.2    Nickels, J.S.3    Fazio, S.D.4    Davis, W.M.5
  • 23
    • 0020399697 scopus 로고
    • Sensitive assay, based on hydroxy-fatty acids from lipopolysaccharide lipid a for gram negative bacteria in sediments
    • Parker, J.H., G.A. Smith, H.L. Fredrickson, J.R. Vestal and D.C. White. Sensitive assay, based on hydroxy-fatty acids from lipopolysaccharide lipid A for gram negative bacteria in sediments. Appl. Environ. Microbiol. 1982, 44, 1170-1177.
    • (1982) Appl. Environ. Microbiol. , vol.44 , pp. 1170-1177
    • Parker, J.H.1    Smith, G.A.2    Fredrickson, H.L.3    Vestal, J.R.4    White, D.C.5
  • 24
    • 0026724376 scopus 로고
    • A new method for the analysis of amide-linked hydroxy fatty acids in lipid-A from gram-negative bacteria
    • Bhat, R.U. and R.W. Carlson. A new method for the analysis of amide-linked hydroxy fatty acids in lipid-A from gram-negative bacteria. Glycobiology. 1992, 2,: 535-539.
    • (1992) Glycobiology , vol.2 , pp. 535-539
    • Bhat, R.U.1    Carlson, R.W.2
  • 26
    • 0025908006 scopus 로고
    • Archaebacterial ether lipid diversity analyzed by supercritical fluid chromatography: Integration with a bacterial lipid protocol
    • Hedrick, D.B., J.B. Guckert and D.C. White. Archaebacterial ether lipid diversity analyzed by supercritical fluid chromatography: Integration with a bacterial lipid protocol. J. Lipid Res. 1991, 32, 659-666.
    • (1991) J. Lipid Res. , vol.32 , pp. 659-666
    • Hedrick, D.B.1    Guckert, J.B.2    White, D.C.3
  • 27
    • 0018380934 scopus 로고
    • Poly-beta-hydroxybutyrate accumulation as a measure of unbalanced growth of the estuarine detrital microbiota
    • Nickels, J.S., J.D. King and D.C. White. Poly-beta-hydroxybutyrate accumulation as a measure of unbalanced growth of the estuarine detrital microbiota. Appl. Environ. Microbiol. 1979, 7, 459-465.
    • (1979) Appl. Environ. Microbiol. , vol.7 , pp. 459-465
    • Nickels, J.S.1    King, J.D.2    White, D.C.3
  • 28
    • 0020684899 scopus 로고
    • Polymeric beta-hydroxyalkanoates from environmental samples and Bacillus megaterium
    • Findlay, R.H. and D.C. White. Polymeric beta-hydroxyalkanoates from environmental samples and Bacillus megaterium. Appl. Environ. Microbiol. 1983, 45, 71-78.
    • (1983) Appl. Environ. Microbiol. , vol.45 , pp. 71-78
    • Findlay, R.H.1    White, D.C.2
  • 29
    • 0004290581 scopus 로고
    • VCH Publishers Inc., New York, NY
    • Doi, Y.; Microbial Polyesters, VCH Publishers Inc., New York, NY. 1990; pp. 1-8.
    • (1990) Microbial Polyesters , pp. 1-8
    • Doi, Y.1
  • 30
    • 0343550723 scopus 로고
    • Quantitative determination of the nutritional status of detrital microbiota and the grazing fauna by triglyceride glycerol analysis
    • Gehron, M.J. and D.C. White. Quantitative determination of the nutritional status of detrital microbiota and the grazing fauna by triglyceride glycerol analysis. J. Exp. Mar. Biol. 1982, 64, 145-158.
    • (1982) J. Exp. Mar. Biol. , vol.64 , pp. 145-158
    • Gehron, M.J.1    White, D.C.2
  • 31
    • 0022505895 scopus 로고
    • Phospholipid, ester-linked fatty acid profile changes during nutrient deprivation of Vibrio cholerae: Increases in the trans/cis ratio and proportions of cyclopropyl fatty acids
    • Guckert, J.B., M.A. Hood and D.C. White. Phospholipid, ester-linked fatty acid profile changes during nutrient deprivation of Vibrio cholerae: increases in the trans/cis ratio and proportions of cyclopropyl fatty acids. Appl. Environ. Microbiol. 1986, 52, 794-801.
    • (1986) Appl. Environ. Microbiol. , vol.52 , pp. 794-801
    • Guckert, J.B.1    Hood, M.A.2    White, D.C.3
  • 32
    • 0000522843 scopus 로고
    • Phospholipid ester-linked fatty acid profiles as reproducible assays for changes in prokaryotic community structure of estuarine sediment
    • Guckert, J.B., C.P. Antworth, P.D. Nichols and D.C. White. Phospholipid ester-linked fatty acid profiles as reproducible assays for changes in prokaryotic community structure of estuarine sediment. FEMS Microbiol. Ecology. 1985, 31, 147-158.23.
    • (1985) FEMS Microbiol. Ecology , vol.31 , pp. 147-15823
    • Guckert, J.B.1    Antworth, C.P.2    Nichols, P.D.3    White, D.C.4
  • 33
    • 0026696672 scopus 로고
    • Conversion of cis unsaturated fatty acids to trans, a possible mechanism for the protection of phenol degrading Pseudomonas putida P8 from substrate toxicity
    • Heipieper, H-J., R. Diffenbach and H. Keweloh. Conversion of cis unsaturated fatty acids to trans, a possible mechanism for the protection of phenol degrading Pseudomonas putida P8 from substrate toxicity. Appl. Environ. Microbiol. 1992, 58, 1847-1852.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 1847-1852
    • Heipieper, H.-J.1    Diffenbach, R.2    Keweloh, H.3
  • 34
    • 0030030544 scopus 로고    scopus 로고
    • Cell envelope changes in Solvent-tolerant and solvent sensitive Pseudomonas putida strains following exposure to O-xylene
    • Pinkart, H.C., J.W. Wolfram, R. Rogers and D.C. White. Cell envelope changes in Solvent-tolerant and solvent sensitive Pseudomonas putida strains following exposure to O-xylene. Appl. Env. Microbiol. 1996, 62, 1127-1131.
    • (1996) Appl. Env. Microbiol. , vol.62 , pp. 1127-1131
    • Pinkart, H.C.1    Wolfram, J.W.2    Rogers, R.3    White, D.C.4
  • 35
    • 0023018045 scopus 로고
    • Microbial respiratory quinones in the environment I. A sensitive liquid Chromatographic method
    • Hedrick, D.B. and D.C. White. Microbial respiratory quinones in the environment I. A sensitive liquid Chromatographic method. J. Microbiol. Methods. 1986, 5, 243-254.
    • (1986) J. Microbiol. Methods , vol.5 , pp. 243-254
    • Hedrick, D.B.1    White, D.C.2
  • 36
    • 0016194051 scopus 로고
    • The replacement of phosphatidylethanlolamine and acidic phospholipids by ornithine-amide lipid and a minor phosphorus-free lipid in Pseudomonas fluorescens NCMB129
    • Minnikin D.E., and Abdolrahimzadeh H. The replacement of phosphatidylethanlolamine and acidic phospholipids by ornithine-amide lipid and a minor phosphorus-free lipid in Pseudomonas fluorescens NCMB129. FEBS Letters. 1974, 43, 257-260.
    • (1974) FEBS Letters , vol.43 , pp. 257-260
    • Minnikin, D.E.1    Abdolrahimzadeh, H.2
  • 37
    • 0009942652 scopus 로고
    • Bacterial lipids
    • Academic Press, New York, NY, Wakil, S. Ed.
    • Lennarz, W.J. Bacterial lipids. In: Lipid Metabolism. Academic Press, New York, NY, Wakil, S. Ed.; 1970; pp 155-183.
    • (1970) Lipid Metabolism , pp. 155-183
    • Lennarz, W.J.1
  • 39
    • 12744281935 scopus 로고
    • The extraction and purification of microbial DNA from sediments
    • Ogram, A., G.S. Sayler and T. Barkay. The extraction and purification of microbial DNA from sediments. J. Microbiol. Methods. 1987, 7, 57-66.
    • (1987) J. Microbiol. Methods , vol.7 , pp. 57-66
    • Ogram, A.1    Sayler, G.S.2    Barkay, T.3
  • 40
    • 0028995651 scopus 로고
    • Chemical ecology: Possible linkage between macro- and microbial ecology
    • White, D.C. Chemical ecology: Possible linkage between macro- and microbial ecology. Oikos. 1995, 74, 174-181.
    • (1995) Oikos , vol.74 , pp. 174-181
    • White, D.C.1


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