Rheinheimera tilapiae sp. nov., isolated from a freshwater culture pond

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART4, 2013, Pages 1457-1463

  Chen, Wen Ming ^a   Yang, Shwu Harn ^a   Young, Chiu Chung ^b   Sheu, Shih Yi ^a  

^a NATIONAL KAOHSIUNG UNIVERSITY OF APPLIED SCIENCES   (Taiwan)

^b NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; FRESH WATER; GENOMIC DNA; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLSERINE; PHOSPHOLIPID; QUINONE DERIVATIVE; RNA 16S; SODIUM CHLORIDE;

AEROBIC BACTERIUM; ARTICLE; BACILLUS (ROD SHAPED BACTERIUM); BACTERIAL FLAGELLUM; BACTERIAL GROWTH; BACTERIAL STRAIN; CELL MOTILITY; CICHLID; FISH; GC RICH SEQUENCE; GENE SEQUENCE; GENOTYPE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENY; POND; PRIORITY JOURNAL; RHEINHEIMERA TILAPIAE; TAIWAN; TAXONOMY;

EID: 84876086629     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.043836-0     Document Type: Article

References (38)

1. Anzai, Y., Kudo, Y. & Oyaizu, H. (1997). The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera. Int J Syst Bacteriol 47, 249-251.
2. Beveridge, T. J., Lawrence, J. R. & Murray, R. G. E. (2007). Sampling and staining for light microscopy. In Methods for General and Molecular Bacteriology, 3rd edn, pp. 19-33. Edited by T. J. Beveridge, J. A. Breznak, G. A. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, D.C.: American Society for Microbiology.
3. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861-1868.
4. Brettar, I., Christen, R. & Höfle, M. G. (2002). Rheinheimera baltica gen. nov., sp. nov., a blue-coloured bacterium isolated from the central Baltic Sea. Int J Syst Evol Microbiol 52, 1851-1857.
5. Brettar, I., Christen, R. & Höfle, M. G. (2006). Rheinheimera perlucida sp. nov., a marine bacterium of the Gammaproteobacteria isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 56, 2177-2183.
6. Breznak, J. A. & Costilow, R. N. (2007). Physicochemical factors in growth. In Methods for General and Molecular Bacteriology, 3rd edn, pp. 309-329. Edited by T. J. Beveridge, J. A. Breznak, G. A. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, D.C.: American Society for Microbiology.
7. Chen, W. M., Laevens, S., Lee, T. M., Coenye, T., De Vos, P., Mergeay, M. & Vandamme, P. (2001). Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient. Int J Syst Evol Microbiol 51, 1729-1735.
8. Chen, W.M., Lin, C. Y. & Sheu, S. Y. (2010a). Investigating antimicrobial activity in Rheinheimera sp. due to hydrogen peroxide generated by Llysine oxidase activity. Enzyme Microb Technol 46, 487-493.
9. Chen, W. M., Lin, C. Y., Young, C. C. & Sheu, S. Y. (2010b). Rheinheimera aquatica sp. nov., an antimicrobial activity producing bacterium isolated from freshwater culture pond. J Microbiol Biotechnol 20, 1386-1392.
10. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
11. Cole, J. R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R. J., Kulam-Syed-Mohideen, A. S., McGarrell, D. M., Marsh, T. & other authors (2009). The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37 (Database issue,), D141-D145.
12. Collins, M. D. (1985). Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267-287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
13. Embley, T. M. & Wait, R. (1994). Structural lipids of eubacteria. In Chemical Methods in Prokaryotic Systematics, pp. 121-161. Edited by M. Goodfellow & A. G. O'Donnell. England: John Wiley & Sons Ltd.
14. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
15. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
16. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3. 5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
17. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
18. Halpern, M., Senderovich, Y. & Snir, S. (2007). Rheinheimera chironomi sp. nov., isolated from a chironomid (Diptera; Chironomidae) egg mass. Int J Syst Evol Microbiol 57, 1872-1875.
19. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
20. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
21. Li, H. J., Zhang, X. Y., Zhang, Y. J., Zhou, M. Y., Gao, Z. M., Chen, X. L., Dang, H. Y. & Zhang, Y. Z. (2011). Rheinheimera nanhaiensis sp. nov., isolated from marine sediments, and emended description of the genus Rheinheimera Brettar et al. 2002 emend. Merchant et al. 2007. Int J Syst Evol Microbiol 61, 1016-1022.
22. Liu, Y., Jiang, J. T., Xu, C. J., Liu, Y. H., Song, X. F., Li, H. & Liu, Z. P. (2012). Rheinheimera longhuensis sp. nov., isolated from a slightly alkaline lake, and emended description of genus Rheinheimera Brettar et al. 2002. Int J Syst Evol Microbiol 62, 2927-2933.
23. Merchant, M. M., Welsh, A. K. & McLean, R. J. C. (2007). Rheinheimera texasensis sp. nov., a halointolerant freshwater oligotroph. Int J Syst Evol Microbiol 57, 2376-2380.
24. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159--167.
25. Nokhal, T. H. & Schlegel, H. G. (1983). Taxonomic study of Paracoccus denitrificans. Int J Syst Bacteriol 33, 26-37.
26. Powers, E. M. (1995). Efficacy of the Ryu nonstaining KOH technique for rapidly determining gram reactions of food-borne and waterborne bacteria and yeasts. Appl Environ Microbiol 61, 3756-3758.
27. Romanenko, L. A., Uchino, M., Falsen, E., Zhukova, N. V., Mikhailov, V. V. & Uchimura, T. (2003). Rheinheimera pacifica sp. nov., a novel halotolerant bacterium isolated from deep sea water of the Pacific. Int J Syst Evol Microbiol 53, 1973-1977.
28. Ryu, S. H., Chung, B. S., Park, M., Lee, S. S., Lee, S. S. & Jeon, C. O. (2008). Rheinheimera soli sp. nov., a gammaproteobacterium isolated from soil in Korea. Int J Syst Evol Microbiol 58, 2271-2274.
29. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
30. Sasser, M. (1990). Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
31. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
32. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
33. Tindall, B. J., Sikorski, J., Smibert, R. A. & Krieg, N. R. (2007). Phenotypic characterization and the principles of comparative systematics. In Methods for General and Molecular Bacteriology, 3rd edn, pp. 330-393. Edited by T. J. Beveridge, J. A. Breznak, G. A. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, D.C.: American Society for Microbiology.
34. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
35. Wen, C. M., Tseng, C. S., Cheng, C. Y. & Li, Y. K. (2002). Purification, characterization and cloning of a chitinase from Bacillus sp. NCTU2. Biotechnol Appl Biochem 35, 213-219.
36. Yakimov, M. M., Golyshin, P. N., Lang, S., Moore, E. R. B., Abraham, W.-R., Lünsdorf, H. & Timmis, K. N. (1998). Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactantproducing marine bacterium. Int J Syst Bacteriol 48, 339-348.
37. Yoon, J.-H., Park, S. E., Kang, S.-J. & Oh, T.-K. (2007). Rheinheimera aquimaris sp. nov., isolated from seawater of the East Sea in Korea. Int J Syst Evol Microbiol 57, 1386-1390.
38. Zhang, X., Sun, L., Qiu, F., McLean, R. J. C., Jiang, R. & Song, W. (2008). Rheinheimera tangshanensis sp. nov., a rice root-associated bacterium. Int J Syst Evol Microbiol 58, 2420-2424.