Rheinheimera longhuensis sp. nov., isolated from a slightly alkaline lake, and emended description of genus Rheinheimera Brettar et al. 2002

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 12, 2012, Pages 2927-2933

  Liu, Ying ^a   Jiang, Jia Tong ^a   Xu, Cheng Jun ^b   Liu, Ying Hao ^a   Song, Xue Feng ^b   Li, Hao ^b   Liu, Zhi Pei ^a  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b Water Supply Company of Daqing Petroleum Administration   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; FRESH WATER; LAKE WATER; QUINONE DERIVATIVE; RNA 16S; SEA WATER; SODIUM CHLORIDE;

AGAR MEDIUM; ALKALINITY; ARTICLE; BACTERIAL CELL; BACTERIAL FLAGELLUM; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; DNA CONTENT; GAMMAPROTEOBACTERIA; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; LAKE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RHEINHEIMERA AQUIMARIS; RHEINHEIMERA CHIRONOMI; RHEINHEIMERA LONGHUENSIS; RHEINHEIMERA PACIFICA;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; CHROMATIACEAE; DNA, BACTERIAL; FATTY ACIDS; GENES, BACTERIAL; LAKES; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; UBIQUINONE; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS); RHEINHEIMERA; RHEINHEIMERA PACIFICA;

EID: 84870926779     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.036020-0     Document Type: Article

References (34)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Bianchi, A. & Bianchi, M. (1995). Bacterial diversity and ecosystem maintenance: an overview. In Microbial Diversity and Ecosystem Maintenance, pp. 185-198. Edited by D. L. Hawksworth & R. R. Colwell. Wallingford, UK: CAB International.
3. Brettar, I., Christen, R. & Höfle, M. G. (2002). Rheinheimera baltica gen. nov., sp. nov., a blue-coloured bacterium isolated from the central Baltic Sea. Int J Syst Evol Microbiol 52, 1851-1857.
4. Brettar, I., Christen, R. & Höfle, M. G. (2006). Rheinheimera perlucida sp. nov., a marine bacterium of the Gammaproteobacteria isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 56, 2177-2183.
5. Chen, W. M., Lin, C. Y., Young, C. C. & Sheu, S. Y. (2010). Rheinheimera aquatica sp. nov., an antimicrobial activity producing bacterium isolated from freshwater culture pond. J Microbiol Biotechnol 20, 1386-1392.
6. Collins, M. D. (1985). Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267-287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
7. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
8. Dong, X.-Z. & Cai, M.-Y. (2001). Determinative Manual for Routine Bacteriology. Beijing: Scientific Press (English translation).
9. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
10. Fitch, W. M. (1971). Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
11. FonnesbechVogel, B., Venkateswaran, K., Christensen, H., Falsen, E., Christiansen, G. & Gram, L. (2000). Polyphasic taxonomic approach in the description of Alishewanella fetalis gen. nov., sp. nov., isolated from a human foetus. Int J Syst Evol Microbiol 50, 1133-1142.
12. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
13. Halpern, M., Senderovich, Y. & Snir, S. (2007). Rheinheimerachironomi sp. nov., isolated from a chironomid (Diptera; Chironomidae) egg mass. Int J Syst Evol Microbiol 57, 1872-1875.
14. Hu, Y.-T., Zhou, P.-J., Zhou, Y.-G., Liu, Z.-H. & Liu, S.-J. (2004). Saccharothrix xinjiangensis sp. nov., a pyrene-degrading actinomycete isolated from Tianchi Lake, Xinjiang, China. Int J Syst Evol Microbiol 54, 2091-2094.
15. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
16. Kates, M. (1986). Techniques of Lipidology, 2nd edn. Amsterdam: Elsevier.
17. Kim, M. S., Roh, S. W., Nam, Y. D., Chang, H. W., Kim, K. H., Jung, M. J., Choi, J. H., Park, E. J. & Bae, J. W. (2009). Alishewanella jeotgali sp. nov., isolated from traditional fermented food, and emended description of the genus Alishewanella. Int J Syst Evol Microbiol 59, 2313-2316.
18. Kim, M. S., Jo, S. K., Roh, S. W. & Bae, J. W. (2010). Alishewanella agrisp. nov., isolated from landfill soil. Int J Syst Evol Microbiol 60, 2199-2203.
19. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
20. Li, H. J., Zhang, X. Y., Zhang, Y. J., Zhou, M. Y., Gao, Z. M., Chen, X. L., Dang, H. Y. & Zhang, Y. Z. (2011). Rheinheimera nanhaiensis sp. nov., isolated from marine sediments, and emended description of the genus Rheinheimera Brettar et al. 2002 emend. Merchant et al. 2007. Int J Syst Evol Microbiol 61, 1016-1022.
21. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
22. Merchant, M. M., Welsh, A. K. & McLean, R. J. (2007). Rheinheimera texasensis sp. nov., a halointolerant freshwater oligotroph. Int J Syst Evol Microbiol 57, 2376-2380.
23. Pinhassi, J. & Berman, T. (2003). Differential growth response of colony-forming a-and c-proteobacteria in dilution cultureandnutrient addition experiments from Lake Kinneret (Israel), the eastern Mediterranean Sea, and the Gulf of Eilat. Appl Environ Microbiol 69, 199-211.
24. Poretsky, R. S., Bano, N., Buchan, A., LeCleir, G., Kleikemper, J., Pickering, M., Pate, W. M., Moran, M. A. & Hollibaugh, J. T. (2005). Analysis of microbial gene transcripts in environmental samples. Appl Environ Microbiol 71, 4121-4126.
25. Roh, S. W., Nam, Y. D., Chang, H. W., Kim, K. H., Kim, M. S., Oh, H. M. & Bae, J. W. (2009). Alishewanella aestuarii sp. nov., isolated from tidal flat sediment, and emended description of the genus Alishewanella. Int J Syst Evol Microbiol 59, 421-424.
26. Romanenko, L. A., Uchino, M., Falsen, E., Zhukova, N. V., Mikhailov, V. V. & Uchimura, T. (2003). Rheinheimera pacifica sp. nov., a novel halotolerant bacterium isolated from deep sea water of the Pacific. Int J Syst Evol Microbiol 53, 1973-1977.
27. Ryu, S. H., Chung, B. S., Park, M., Lee, S. S., Lee, S. S. & Jeon, C. O. (2008). Rheinheimera soli sp. nov., a gammaproteobacterium isolated from soil in Korea. Int J Syst Evol Microbiol 58, 2271-2274.
28. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method forreconstructingphylogenetic trees. Mol Biol Evol 4, 406-425.
29. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
30. Wu, C., Lu, X., Qin, M., Wang, Y. & Ruan, J. (1989). Analysis of menaquinone compound in microbial cells by HPLC. Microbiology [English translation of Microbiology (Beijing)] 16, 176-178.
31. Yamamoto, S. & Harayama, S. (1995). PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl Environ Microbiol 61, 1104-1109.
32. Yoon, J.-H., Park, S. E., Kang, S.-J. & Oh, T.-K. (2007). Rheinheimera aquimaris sp. nov., isolated from seawater of the East Sea in Korea. Int J Syst Evol Microbiol 57, 1386-1390.
33. Zhang, D., Yang, H., Zhang, W., Huang, Z. & Liu, S.-J. (2003). Rhodocista pekingensis sp. nov., a cyst-forming phototrophic bac-terium from a municipal wastewater treatment plant. Int J Syst Evol Microbiol 53, 1111-1114.
34. Zhang, X. X., Sun, L., Qiu, F. B., McLean, R. J. C., Jiang, R. B. & Song, W. (2008). Rheinheimera tangshanensis sp. nov., a rice root-associated bacterium. Int J Syst Evol Microbiol 58, 2420-2424.