Rheinheimera baltica gen. nov., sp. nov., a bluecoloured bacterium isolated from the central Baltic sea

International Journal of Systematic and Evolutionary Microbiology

Volumn 52, Issue 5, 2002, Pages 1851-1857

  Brettar, Ingrid ^a   Christen, Richard ^a   Höfle, Manfred G ^a  

^a HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

Author keywords

'Curacaobacter'; Baltic sea; Marine bacteria

Indexed keywords

CYTOSINE; DNA 16S; FATTY ACID; GUANINE;

ALISHEWANELLA FETALIS; ARTICLE; BACTERIAL FLAGELLUM; BACTERIAL GROWTH; BACTERIUM ISOLATE; BALTIC SEA; BIOCHEMISTRY; CONTROLLED STUDY; DNA CONTENT; DNA DNA HYBRIDIZATION; FERMENTATION; GRAM NEGATIVE BACTERIUM; MARINE ENVIRONMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; PRIORITY JOURNAL; RHEINHEIMERA BALTICA; SALINITY; SEQUENCE ANALYSIS; TAXONOMY; TEMPERATURE;

BALTIC STATES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; ENTEROBACTERIACEAE; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; PIGMENTATION; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEAWATER;

ALISHEWANELLA FETALIS; BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; NEGIBACTERIA; PROTEOBACTERIA; RHEINHEIMERA; RHEINHEIMERA BALTICA;

EID: 0036740805     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02151-0     Document Type: Article

References (33)

1. Alavi, M., Miller, T., Erlandson, K. A., Schneider, R. E. & Belas, R. (2001). Bacterial community associated with Pfiesteria-like dinoflagellate cultures. Environ Microbiol 3, 380-396.
2. Berry, V. & Gascuel, O. (1996). Interpretation of bootstrap trees: threshold of clade selection and induced gain. Mol Biol Evol 13, 999-1011.
3. Brettar, I. & Höfle, M. G. (1993). Nitrous oxide producing heterotrophic bacteria from the water column of the central Baltic: abundance and molecular identification. Mar Ecol Prog Ser 94, 253-265.
4. 2S-oxidation as motor of denitrification at the oxic anoxic interface. Mar Ecol Prog Ser 77, 157-169.
5. Brettar, I. & Rheinheimer, G. (1992). Influence of carbon availability on denitrification in the water column of the central Baltic. Limnol Oceanogr 37, 1146-1163.
6. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
7. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
8. Dye, D. W. (1968). A taxonomic study of the genus Erwinia. N Z J Sci 11, 590-607.
9. Escara, J. F. & Hutton, J. R. (1980). Thermal stability and renaturation of DNA in dimethyl sulfoxide solutions: acceleration of the renaturation rate. Biopolymers 19, 1315-1327.
10. Fonnesbech Vogel, B., Venkateswaran, K., Christensen, H., Falsen, E., Christiansen, G. & Gram, L. (2000). Polyphasic taxonomic approach in the description of Alishewanella fetalis gen. nov., sp. nov., isolated from a human foetus. Int J Syst Evol Microbiol 50, 1133-1142.
11. Gascuel, O. (1997). BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 14, 685-695.
12. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
13. Höfle, M.G. (1990). Transfer RNAs as genotypic fingerprints of eubacteria. Arch Microbiol 153, 299-304.
14. Höfle, M. G. (1998). Genotyping of bacterial isolates from the environment using low-molecular-weight RNA fingerprints. In Molecular Microbial Ecology Manual, pp. 3.3.7.1-3.3.7.23. Edited by A. D. L. Akkerman, J. D. van Elsas & F. J. de Bruijn. Dordrecht: Kluwer.
15. Höfle, M.G. & Brettar, I. (1995). Taxonomic diversity and metabolic activity of microbial communities in the water column of the central Baltic Sea. Limnol Oceanogr 40, 868-874.
16. Höfle, M. G. & Brettar, I. (1996). Genotyping of heterotrophic bacteria from the central Baltic Sea by use of low-molecular-weight RNA profiles. Appl Environ Microbiol 62, 1383-1390.
17. Huβ, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
18. Ivanova, E. P., Sawabe, T., Lysenko, A. M. & 8 other authors (2002). Pseudoalteromonas ruthenica sp. nov., isolated from marine invertebrates. Int J Syst Evol Microbiol 52, 235-240.
19. Jahnke, K. D. (1992). Basic computer program for evaluation of spectroscopic DNA renaturation data from a Gilford System 2600 spectrometer on a PC/XT/AT type PC. J Microbiol Methods 15, 61-73.
20. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
21. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
22. Moore, E. R. B., Mau, M., Arnscheidt, A., Böttger, E. C., Hutson, R. A., Collins, M. D., Van de Peer, Y., De Wachter, R. & Timmis, K. N. (1996). The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships. Syst Appl Microbiol 19, 476-492.
23. Moore, E. R. B., Arnscheidt, A., Krüger, A., Strömpl, C. & Mau, M. (1999). Simplified protocols for the preparation of genomic DNA from bacterial cultures. In Molecular Microbial Ecology Manual, pp. 1.6.1.1-1.6.1.15. Edited by A. D. L. Akkermans, J. D. van Elsas & F. J. de Bruijn. Dordrecht: Kluwer.
24. Mullis, K. B. & Faloona, F. A. (1987). Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol 155, 335-350.
25. Oppenheimer, C. H. & ZoBell, C. E. (1952). The growth and viability of sixty-three species of marine bacteria as influenced by hydrostatic pressure. J Mar Res 11, 10-18.
26. Perrière, G. & Gouy, M. (1996). WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 78, 364 369.
27. Rheinheimer, G. (1992). Aquatic Microbiology. Chichester: Wiley.
28. Sasser, M. (1990). Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids. MIDI Technical Note 101. Newark, DE: MIDI Inc.
29. Stackebrandt, E. & Liesack, W. (1994). Nucleic acids and classification. In Handbook of New Bacterial Systematics, pp. 151-194. Edited by M. Goodfellow & A. O'Donnell. London: Academic Press.
30. Stanier, R. Y., Palleroni, N. J. & Doudoroff, M. (1966). The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43, 159-271.
31. Takami, H., Kobata, K., Nagahama, T., Kobayashi, H., Inoue, A. & Horikoshi, K. (1999). Biodiversity in deep-sea sites located near the south part of Japan. Extremophiles 3, 97-102.
32. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
33. Ziemke, F., Höfle, M.G., Lalucat, J. & Rossellö-Mora, R. (1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179-186.