Carnobacterium iners sp. nov., a psychrophilic, lactic acid-producing bacterium from the littoral zone of an Antarctic pond

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART4, 2013, Pages 1370-1375

  Snauwaert, Isabel ^a   Hoste, Bart ^a   De Bruyne, Katrien ^b   Peeters, Karolien ^a   De Vuyst, Luc ^c   Willems, Anne ^a   Vandamme, Peter ^a  

^a GHENT UNIVERSITY   (Belgium)

^b Applied Maths NV   (Belgium)

^c VRIJE UNIVERSITEIT BRUSSEL   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RNA 16S;

ANTARCTICA; ARTICLE; ATPA GENE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CARNOBACTERIUM; CARNOBACTERIUM ALTERFUNDITUM; CARNOBACTERIUM FUNDITUM; CARNOBACTERIUM INERS; LACTIC ACID BACTERIUM; LAKE; MULTILOCUS SEQUENCE TYPING; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHES GENE; PHYLOGENY; PRIORITY JOURNAL; RNA GENE; RPOA GENE; SEQUENCE HOMOLOGY; TAXONOMY;

EID: 84876083854     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.042861-0     Document Type: Article

References (23)

1. Coenye, T., Falsen, E., Vancanneyt, M., Hoste, B., Govan, J. R. W., Kersters, K. & Vandamme, P. (1999). Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov. Int J Syst Bacteriol 49, 405-413.
2. De Bruyne, K., Schillinger, U., Caroline, L., Boehringer, B., Cleenwerck, I., Vancanneyt, M., De Vuyst, L., Franz, C. M. A. P. & Vandamme, P. (2007). Leuconostoc holzapfelii sp. nov., isolated from Ethiopian coffee fermentation and assessment of sequence analysis of housekeeping genes for delineation of Leuconostoc species. Int J Syst Evol Microbiol 57, 2952-2959.
3. De Bruyne, K., Camu, N., Lefebvre, K., De Vuyst, L. & Vandamme, P. (2008a). Weissella ghanensis sp. nov., isolated from a Ghanaian cocoa fermentation. Int J Syst Evol Microbiol 58, 2721-2725.
4. De Bruyne, K., Franz, C. M. A. P., Vancanneyt, M., Schillinger, U., Mozzi, F., de Valdez, G. F., De Vuyst, L. & Vandamme, P. (2008b). Pediococcus argentinicus sp. nov. from Argentinean fermented wheat flour and identification of Pediococcus species by pheS, rpoA and atpA sequence analysis. Int J Syst Evol Microbiol 58, 2909-2916.
5. De Bruyne, K., Camu, N., De Vuyst, L. & Vandamme, P. (2010). Weissella fabaria sp. nov., from a Ghanaian cocoa fermentation. Int J Syst Evol Microbiol 60, 1999-2005.
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometricdeoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
7. Franzmann, P. D., Höpfl, P., Weiss, N. & Tindall, B. J. (1991). Psychrotrophic, lactic acid-producing bacteria from anoxic waters in Ace Lake, Antarctica; Carnobacterium funditum sp. nov. and Carnobacterium alterfunditum sp. nov. Arch Microbiol 156, 255-262.
8. Goris, J., Suzuki, K.-i., Vos, P. D., Nakase, T. & Kersters, K. (1998). Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44, 1148-1153.
9. Gouy, M., Guindon, S. & Gascuel, O. (2010). SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27, 221-224.
10. Holdeman, L. V. & Moore, W. E. C. (eds) (1977). Anaerobic Laboratory Manual, 4th edn. Blacksburg, VA: Virginia Polytechnic Institute Anaerobic Laboratory.
11. Kim, M.-S., Roh, S. W., Nam, Y.-D., Yoon, J.-H. & Bae, J.-W. (2009). Carnobacterium jeotgali sp. nov., isolated from a Korean traditional fermented food. Int J Syst Evol Microbiol 59, 3168-3171.
12. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
13. Mahenthiralingam, E., Campbell, M. E., Henry, D. A. & Speert, D. P. (1996). Epidemiology of Burkholderia cepacia infection in patients with cystic fibrosis: analysis by randomly amplified polymorphic DNA fingerprinting. J Clin Microbiol 34, 2914-2920.
14. Mesbah, M. & Whitman, W. B. (1989). Measurement of deoxyguanosine/ thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. J Chromatogr A 479, 297-306.
15. Naser, S. M., Thompson, F. L., Hoste, B., Gevers, D., Dawyndt, P., Vancanneyt, M. & Swings, J. (2005). Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology 151, 2141-2150.
16. Naser, S. M., Dawyndt, P., Hoste, B., Gevers, D., Vandemeulebroecke, K., Cleenwerck, I., Vancanneyt, M. & Swings, J. (2007). Identification of lactobacilli by pheS and rpoA gene sequence analyses. Int J Syst Evol Microbiol 57, 2777-2789.
17. Peeters, K., Hodgson, D. A., Convey, P. & Willems, A. (2011). Culturable diversity of heterotrophic bacteria in Forlidas Pond (Pensacola Mountains) and Lundström Lake (Shackleton Range), Antarctica. Microb Ecol 62, 399-413.
18. Pikuta, E. V., Marsic, D., Bej, A., Tang, J., Krader, P. & Hoover, R. B. (2005). Carnobacterium pleistocenium sp. nov., a novel psychrotolerant, facultative anaerobe isolated from permafrost of the Fox Tunnel in Alaska. Int J Syst Evol Microbiol 55, 473-478.
19. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
20. Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J. & Glöckner, F. O. (2007). SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35, 7188-7196.
21. Schumann, P. (2011). Peptidoglycan structure. In Taxonomy of Prokaryotes, Methods in Microbiology, vol. 38, pp. 101-129. Edited by F. O. A. Rainey.
22. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
23. Vancanneyt, M., Mengaud, J., Cleenwerck, I., Vanhonacker, K., Hoste, B., Dawyndt, P., Degivry, M. C., Ringuet, D., Janssens, D. & Swings, J. (2004). Reclassification of Lactobacillus kefirgranum Takizawa et al. 1994 as Lactobacillus kefiranofaciens subsp. kefirgranum subsp. nov. and emended description of L. kefiranofaciens Fujisawa et al. 1988. Int J Syst Evol Microbiol 54, 551-556.