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Volumn 8, Issue 4, 2013, Pages

The Phenotype of Many Independently Isolated +1 Frameshift Suppressor Mutants Supports a Pivotal Role of the P-Site in Reading Frame Maintenance

Author keywords

[No Author keywords available]

Indexed keywords

1 METHYLGUANOSINE; GUANOSINE DERIVATIVE; PEPTIDE TRANSFER RIBONUCLEIC ACID; RIBOSOME PROTEIN; RIBOSOME PROTEIN S9; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 84875941505     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0060246     Document Type: Article
Times cited : (25)

References (89)
  • 1
    • 0037173066 scopus 로고    scopus 로고
    • On the evolution of cells
    • Woese CR, (2002) On the evolution of cells. Proc Natl Acad Sci U S A 99: 8742-8747.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 8742-8747
    • Woese, C.R.1
  • 2
    • 0024722501 scopus 로고
    • Errors and alternatives in reading the universal genetic code
    • Parker J, (1989) Errors and alternatives in reading the universal genetic code. Microbiological Reviews 53: 273-298.
    • (1989) Microbiological Reviews , vol.53 , pp. 273-298
    • Parker, J.1
  • 3
    • 33845895536 scopus 로고    scopus 로고
    • The frequency of translational misreading errors in E. coli is largely determined by tRNA competition
    • Kramer EB, Farabaugh PJ, (2007) The frequency of translational misreading errors in E. coli is largely determined by tRNA competition. RNA 13: 87-96.
    • (2007) RNA , vol.13 , pp. 87-96
    • Kramer, E.B.1    Farabaugh, P.J.2
  • 4
    • 77956019364 scopus 로고    scopus 로고
    • A comprehensive analysis of translational missense errors in the yeast Saccharomyces cerevisiae
    • Kramer EB, Vallabhaneni H, Mayer LM, Farabaugh PJ, (2010) A comprehensive analysis of translational missense errors in the yeast Saccharomyces cerevisiae. RNA 16: 1797-1808.
    • (2010) RNA , vol.16 , pp. 1797-1808
    • Kramer, E.B.1    Vallabhaneni, H.2    Mayer, L.M.3    Farabaugh, P.J.4
  • 5
    • 0027104840 scopus 로고
    • Translational accuracy and the fitness of bacteria
    • Kurland CG, (1992) Translational accuracy and the fitness of bacteria. Annu Rev Genet 26: 29-50.
    • (1992) Annu Rev Genet , vol.26 , pp. 29-50
    • Kurland, C.G.1
  • 6
    • 33749354360 scopus 로고    scopus 로고
    • Structure of the 70S ribosome complexed with mRNA and tRNA
    • Selmer M, Dunham CM, Murphy FV, Weixlbaumer A, Petry S, et al. (2006) Structure of the 70S ribosome complexed with mRNA and tRNA. Science 313: 1935-1942.
    • (2006) Science , vol.313 , pp. 1935-1942
    • Selmer, M.1    Dunham, C.M.2    Murphy, F.V.3    Weixlbaumer, A.4    Petry, S.5
  • 7
    • 33748582906 scopus 로고    scopus 로고
    • Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements
    • Korostelev A, Trakhanov S, Laurberg M, Noller HF, (2006) Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. Cell 126: 1065-1077.
    • (2006) Cell , vol.126 , pp. 1065-1077
    • Korostelev, A.1    Trakhanov, S.2    Laurberg, M.3    Noller, H.F.4
  • 8
    • 18844413446 scopus 로고    scopus 로고
    • Structural insights into translational fidelity
    • Ogle JM, Ramakrishnan V, (2005) Structural insights into translational fidelity. Annu Rev Biochem 74: 129-177.
    • (2005) Annu Rev Biochem , vol.74 , pp. 129-177
    • Ogle, J.M.1    Ramakrishnan, V.2
  • 9
    • 64049083335 scopus 로고    scopus 로고
    • A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment
    • Atkins JF, Björk GR, (2009) A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment. Microbiol Mol Biol Rev 73: 178-210.
    • (2009) Microbiol Mol Biol Rev , vol.73 , pp. 178-210
    • Atkins, J.F.1    Björk, G.R.2
  • 10
    • 0029870925 scopus 로고    scopus 로고
    • Programmed translational frameshifting [review]
    • Farabaugh PJ, (1996) Programmed translational frameshifting [review]. Microbiological Reviews 60: 103-134.
    • (1996) Microbiological Reviews , vol.60 , pp. 103-134
    • Farabaugh, P.J.1
  • 12
    • 0001382184 scopus 로고    scopus 로고
    • Overriding standard decoding: Implications of recoding for ribosome function and enrichment of gene expression
    • Atkins JF, Baranov PV, Fayet O, Herr AJ, Howard MT, et al. (2001) Overriding standard decoding: Implications of recoding for ribosome function and enrichment of gene expression. Cold Spring Harb Symp Quant Biol 66: 217-232.
    • (2001) Cold Spring Harb Symp Quant Biol , vol.66 , pp. 217-232
    • Atkins, J.F.1    Baranov, P.V.2    Fayet, O.3    Herr, A.J.4    Howard, M.T.5
  • 13
    • 0026317770 scopus 로고
    • Towards a genetic dissection of the basis of triplet decoding, and its natural subversion: programmed reading frame shifts and hops
    • Atkins JF, Weiss RB, Thompson S, Gesteland RF, (1991) Towards a genetic dissection of the basis of triplet decoding, and its natural subversion: programmed reading frame shifts and hops. Annu Rev Genet 25: 201-228.
    • (1991) Annu Rev Genet , vol.25 , pp. 201-228
    • Atkins, J.F.1    Weiss, R.B.2    Thompson, S.3    Gesteland, R.F.4
  • 14
    • 27944508307 scopus 로고    scopus 로고
    • Amino acid specificity in translation
    • Dale T, Uhlenbeck OC, (2005) Amino acid specificity in translation. Trends Biochem Sci 30: 659-665.
    • (2005) Trends Biochem Sci , vol.30 , pp. 659-665
    • Dale, T.1    Uhlenbeck, O.C.2
  • 15
    • 9744230656 scopus 로고    scopus 로고
    • Uniform binding of aminoacylated transfer RNAs to the ribosomal A and P sites
    • Fahlman RP, Dale T, Uhlenbeck OC, (2004) Uniform binding of aminoacylated transfer RNAs to the ribosomal A and P sites. Mol Cell 16: 799-805.
    • (2004) Mol Cell , vol.16 , pp. 799-805
    • Fahlman, R.P.1    Dale, T.2    Uhlenbeck, O.C.3
  • 16
    • 0035801515 scopus 로고    scopus 로고
    • Improvement of reading frame maintenance is a common function for several tRNA modifications
    • Urbonavicius J, Qian Q, Durand JM, Hagervall TG, Björk GR, (2001) Improvement of reading frame maintenance is a common function for several tRNA modifications. EMBO J 20: 4863-4873.
    • (2001) EMBO J , vol.20 , pp. 4863-4873
    • Urbonavicius, J.1    Qian, Q.2    Durand, J.M.3    Hagervall, T.G.4    Björk, G.R.5
  • 17
    • 0027197551 scopus 로고
    • Deficiency of 1-methylguanosine in tRNA from Salmonella typhimurium induces frameshifting by quadruplet translocation
    • Hagervall TG, Tuohy TM, Atkins JF, Björk GR, (1993) Deficiency of 1-methylguanosine in tRNA from Salmonella typhimurium induces frameshifting by quadruplet translocation. J Mol Biol 232: 756-765.
    • (1993) J Mol Biol , vol.232 , pp. 756-765
    • Hagervall, T.G.1    Tuohy, T.M.2    Atkins, J.F.3    Björk, G.R.4
  • 18
    • 0024316220 scopus 로고
    • Prevention of translational frameshifting by the modified nucleoside 1-methylguanosine
    • Björk GR, Wikström PM, Byström AS, (1989) Prevention of translational frameshifting by the modified nucleoside 1-methylguanosine. Science 244: 986-989.
    • (1989) Science , vol.244 , pp. 986-989
    • Björk, G.R.1    Wikström, P.M.2    Byström, A.S.3
  • 19
    • 0037163022 scopus 로고    scopus 로고
    • Lack of pseudouridine 38/39 in the anticodon arm of yeast cytoplasmic tRNA decreases in vivo recoding efficiency
    • Lecointe F, Namy O, Hatin I, Simos G, Rousset JP, et al. (2002) Lack of pseudouridine 38/39 in the anticodon arm of yeast cytoplasmic tRNA decreases in vivo recoding efficiency. J Biol Chem 277: 30445-30453.
    • (2002) J Biol Chem , vol.277 , pp. 30445-30453
    • Lecointe, F.1    Namy, O.2    Hatin, I.3    Simos, G.4    Rousset, J.P.5
  • 20
    • 0345624489 scopus 로고    scopus 로고
    • Transfer RNA modification status influences retroviral ribosomal frameshifting
    • Carlson BA, Kwon SY, Chamorro M, Oroszlan S, Hatfield DL, et al. (1999) Transfer RNA modification status influences retroviral ribosomal frameshifting. Virology 255: 2-8.
    • (1999) Virology , vol.255 , pp. 2-8
    • Carlson, B.A.1    Kwon, S.Y.2    Chamorro, M.3    Oroszlan, S.4    Hatfield, D.L.5
  • 21
    • 0035916013 scopus 로고    scopus 로고
    • 1-methylguanosine in place of Y base at position 37 in phenylalanine tRNA is responsible for its shiftiness in retroviral ribosomal frameshifting
    • Carlson BA, Mushinski JF, Henderson DW, Kwon SY, Crain PF, et al. (2001) 1-methylguanosine in place of Y base at position 37 in phenylalanine tRNA is responsible for its shiftiness in retroviral ribosomal frameshifting. Virology 279: 130-135.
    • (2001) Virology , vol.279 , pp. 130-135
    • Carlson, B.A.1    Mushinski, J.F.2    Henderson, D.W.3    Kwon, S.Y.4    Crain, P.F.5
  • 22
    • 34548816729 scopus 로고    scopus 로고
    • Role of a tRNA base modification and its precursors in frameshifting in eukaryotes
    • Waas WF, Druzina Z, Hanan M, Schimmel P, (2007) Role of a tRNA base modification and its precursors in frameshifting in eukaryotes. J Biol Chem 282: 26026-26034.
    • (2007) J Biol Chem , vol.282 , pp. 26026-26034
    • Waas, W.F.1    Druzina, Z.2    Hanan, M.3    Schimmel, P.4
  • 23
    • 79952281325 scopus 로고    scopus 로고
    • A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification
    • El Yacoubi B, Hatin I, Deutsch C, Kahveci T, Rousset JP, et al. (2011) A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification. EMBO J 30: 882-893.
    • (2011) EMBO J , vol.30 , pp. 882-893
    • El Yacoubi, B.1    Hatin, I.2    Deutsch, C.3    Kahveci, T.4    Rousset, J.P.5
  • 24
    • 84875938707 scopus 로고    scopus 로고
    • In: Garrett RA, Douthwaite SR, Liljas A, Matheson AT, Moore PB et al., editors. The Ribosome: Structure, Function, Antibiotics, and Cellular Interaction. Washington, D.C.: American Society for Microbiology
    • Gallant J, Lindsley D, Masucci J (2000) The unbearable lightness of peptidyl-tRNA. In: Garrett RA, Douthwaite SR, Liljas A, Matheson AT, Moore PB et al., editors. The Ribosome: Structure, Function, Antibiotics, and Cellular Interaction. Washington, D.C.: American Society for Microbiology. 385-396.
    • (2000) The unbearable lightness of peptidyl-tRNA , pp. 385-396
    • Gallant, J.1    Lindsley, D.2    Masucci, J.3
  • 25
    • 0032546761 scopus 로고    scopus 로고
    • TRNA imbalance promotes -1 frameshifting via near-cognate decoding
    • ÓConnor M, (1998) TRNA imbalance promotes -1 frameshifting via near-cognate decoding. J Mol Biol 279: 727-736.
    • (1998) J Mol Biol , vol.279 , pp. 727-736
    • ÓConnor, M.1
  • 27
    • 0000516715 scopus 로고
    • Translation of the sequence AGG-AGG yields 50% ribosomal frameshift
    • Spanjaard RA, van Duin J, (1988) Translation of the sequence AGG-AGG yields 50% ribosomal frameshift. Proc Natl Acad Sci U S A 85: 7967-7971.
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 7967-7971
    • Spanjaard, R.A.1    van Duin, J.2
  • 28
    • 0023519951 scopus 로고
    • Slippery runs, shifty stops, backward steps, and forward hops: -2, -1, +1, +2, +5, and +6 ribosomal frameshifting
    • Weiss RB, Dunn DM, Atkins JF, Gesteland RF, (1987) Slippery runs, shifty stops, backward steps, and forward hops: -2, -1, +1, +2, +5, and +6 ribosomal frameshifting. Cold Spring Harb Symp Quant Biol 52: 687-693.
    • (1987) Cold Spring Harb Symp Quant Biol , vol.52 , pp. 687-693
    • Weiss, R.B.1    Dunn, D.M.2    Atkins, J.F.3    Gesteland, R.F.4
  • 30
    • 16544363622 scopus 로고    scopus 로고
    • Translational accuracy during exponential, postdiauxic, and stationary growth phases in Saccharomyces cerevisiae
    • Stahl G, Salem SN, Chen L, Zhao B, Farabaugh PJ, (2004) Translational accuracy during exponential, postdiauxic, and stationary growth phases in Saccharomyces cerevisiae. Eukaryot Cell 3: 331-338.
    • (2004) Eukaryot Cell , vol.3 , pp. 331-338
    • Stahl, G.1    Salem, S.N.2    Chen, L.3    Zhao, B.4    Farabaugh, P.J.5
  • 31
    • 0032536184 scopus 로고    scopus 로고
    • Growth phase dependent stop codon readthrough and shift of translation reading frame in Escherichia coli
    • Wenthzel AM, Stancek M, Isaksson LA, (1998) Growth phase dependent stop codon readthrough and shift of translation reading frame in Escherichia coli. FEBS Lett 421: 237-242.
    • (1998) FEBS Lett , vol.421 , pp. 237-242
    • Wenthzel, A.M.1    Stancek, M.2    Isaksson, L.A.3
  • 32
    • 0019410666 scopus 로고
    • Frameshift Suppression
    • Roth JR, (1981) Frameshift Suppression. Cell 24: 601-602.
    • (1981) Cell , vol.24 , pp. 601-602
    • Roth, J.R.1
  • 34
    • 0032015813 scopus 로고    scopus 로고
    • A new model for phenotypic suppression of frameshift mutations by mutant tRNAs
    • Qian Q, Li JN, Zhao H, Hagervall TG, Farabaugh PJ, et al. (1998) A new model for phenotypic suppression of frameshift mutations by mutant tRNAs. Mol Cell 1: 471-482.
    • (1998) Mol Cell , vol.1 , pp. 471-482
    • Qian, Q.1    Li, J.N.2    Zhao, H.3    Hagervall, T.G.4    Farabaugh, P.J.5
  • 35
    • 0031567788 scopus 로고    scopus 로고
    • Structural alterations far from the anticodon of the tRNAProGGG of Salmonella typhimurium induce +1 frameshifting at the peptidyl-site
    • Qian Q, Björk GR, (1997) Structural alterations far from the anticodon of the tRNAProGGG of Salmonella typhimurium induce +1 frameshifting at the peptidyl-site. J Mol Biol 273: 978-992.
    • (1997) J Mol Biol , vol.273 , pp. 978-992
    • Qian, Q.1    Björk, G.R.2
  • 36
    • 58149087082 scopus 로고    scopus 로고
    • The ribosomal grip of the peptidyl-tRNA is critical for reading frame maintenance
    • Näsvall SJ, Nilsson K, Björk GR, (2009) The ribosomal grip of the peptidyl-tRNA is critical for reading frame maintenance. J Mol Biol 385: 350-367.
    • (2009) J Mol Biol , vol.385 , pp. 350-367
    • Näsvall, S.J.1    Nilsson, K.2    Björk, G.R.3
  • 37
    • 1642540279 scopus 로고    scopus 로고
    • P-site tRNA is a crucial initiator of ribosomal frameshifting
    • Baranov PV, Gesteland RF, Atkins JF, (2004) P-site tRNA is a crucial initiator of ribosomal frameshifting. RNA 10: 221-230.
    • (2004) RNA , vol.10 , pp. 221-230
    • Baranov, P.V.1    Gesteland, R.F.2    Atkins, J.F.3
  • 38
    • 0343665638 scopus 로고    scopus 로고
    • How translational accuracy influences reading frame maintenance
    • Farabaugh PJ, Björk GR, (1999) How translational accuracy influences reading frame maintenance. EMBO J 18: 1427-1434.
    • (1999) EMBO J , vol.18 , pp. 1427-1434
    • Farabaugh, P.J.1    Björk, G.R.2
  • 39
    • 0033380022 scopus 로고    scopus 로고
    • Near-cognate peptidyl-tRNAs promote+1 programmed translational frameshifting in yeast
    • Sundararajan A, Michaud WA, Qian Q, Stahl G, Farabaugh PJ, (1999) Near-cognate peptidyl-tRNAs promote+1 programmed translational frameshifting in yeast. Mol Cell 4: 1005-1015.
    • (1999) Mol Cell , vol.4 , pp. 1005-1015
    • Sundararajan, A.1    Michaud, W.A.2    Qian, Q.3    Stahl, G.4    Farabaugh, P.J.5
  • 40
    • 0036711292 scopus 로고    scopus 로고
    • An "integrated model" of programmed ribosomal frameshifting
    • Harger JW, Meskauskas A, Dinman JD, (2002) An "integrated model" of programmed ribosomal frameshifting. Trends Biochem Sci 27: 448-454.
    • (2002) Trends Biochem Sci , vol.27 , pp. 448-454
    • Harger, J.W.1    Meskauskas, A.2    Dinman, J.D.3
  • 41
    • 0036534459 scopus 로고    scopus 로고
    • Ribosome structure: revisiting the connection between translational accuracy and unconventional decoding
    • Stahl G, McCarty GP, Farabaugh PJ, (2002) Ribosome structure: revisiting the connection between translational accuracy and unconventional decoding. Trends Biochem Sci 27: 178-183.
    • (2002) Trends Biochem Sci , vol.27 , pp. 178-183
    • Stahl, G.1    McCarty, G.P.2    Farabaugh, P.J.3
  • 42
    • 84873799110 scopus 로고
    • Studies on Lysogenesis
    • Bertani G, (1951) Studies on Lysogenesis. J Bacteriol 62: 293-300.
    • (1951) J Bacteriol , vol.62 , pp. 293-300
    • Bertani, G.1
  • 43
    • 77049313195 scopus 로고
    • Acetylornithinase of Escherichia coli: Partial purification and some properties
    • Vogel HJ, Bonner DM, (1956) Acetylornithinase of Escherichia coli: Partial purification and some properties. J Biol Chem 218: 97-106.
    • (1956) J Biol Chem , vol.218 , pp. 97-106
    • Vogel, H.J.1    Bonner, D.M.2
  • 45
    • 0015449701 scopus 로고
    • Phage P22-mutants with increased or decreased transduction abilities
    • Schmieger H, (1972) Phage P22-mutants with increased or decreased transduction abilities. Molecular & General Genetics 119: 75-88.
    • (1972) Molecular & General Genetics , vol.119 , pp. 75-88
    • Schmieger, H.1
  • 46
    • 0014966535 scopus 로고
    • Suppressors of frameshift mutations in Salmonella typhimurium
    • Riddle DL, Roth JR, (1970) Suppressors of frameshift mutations in Salmonella typhimurium. J Mol Biol 54: 131-144.
    • (1970) J Mol Biol , vol.54 , pp. 131-144
    • Riddle, D.L.1    Roth, J.R.2
  • 47
    • 0014968942 scopus 로고
    • Restoration of in-phase translation by an unlinked suppressor of a frameshift mutation in Salmonella typhimurium
    • Yourno J, Tanemura S, (1970) Restoration of in-phase translation by an unlinked suppressor of a frameshift mutation in Salmonella typhimurium. Nature 225: 422-426.
    • (1970) Nature , vol.225 , pp. 422-426
    • Yourno, J.1    Tanemura, S.2
  • 48
    • 0019454958 scopus 로고
    • Selection for loss of tetracycline resistance by Escherichia coli
    • Maloy SR, Nunn WD, (1981) Selection for loss of tetracycline resistance by Escherichia coli. J Bacteriol 145: 1110-1111.
    • (1981) J Bacteriol , vol.145 , pp. 1110-1111
    • Maloy, S.R.1    Nunn, W.D.2
  • 49
    • 0029913592 scopus 로고    scopus 로고
    • Flagellin A is essential for the virulence of Vibrio anguillarum
    • Milton DL, O'Toole R, Horstedt P, Wolf-Watz H, (1996) Flagellin A is essential for the virulence of Vibrio anguillarum. J Bacteriol 178: 1310-1319.
    • (1996) J Bacteriol , vol.178 , pp. 1310-1319
    • Milton, D.L.1    O'Toole, R.2    Horstedt, P.3    Wolf-Watz, H.4
  • 50
    • 0033880695 scopus 로고    scopus 로고
    • Escherichia coli DNA polymerase IV mutator activity: genetic requirements and mutational specificity
    • Wagner J, Nohmi T, (2000) Escherichia coli DNA polymerase IV mutator activity: genetic requirements and mutational specificity. J Bacteriol 182: 4587-4595.
    • (2000) J Bacteriol , vol.182 , pp. 4587-4595
    • Wagner, J.1    Nohmi, T.2
  • 51
    • 0000918686 scopus 로고    scopus 로고
    • The dinB gene encodes a novel E. coli DNA polymerase, DNA pol IV, involved in mutagenesis
    • Wagner J, Gruz P, Kim SR, Yamada M, Matsui K, et al. (1999) The dinB gene encodes a novel E. coli DNA polymerase, DNA pol IV, involved in mutagenesis. Mol Cell 4: 281-286.
    • (1999) Mol Cell , vol.4 , pp. 281-286
    • Wagner, J.1    Gruz, P.2    Kim, S.R.3    Yamada, M.4    Matsui, K.5
  • 52
    • 28444484984 scopus 로고    scopus 로고
    • Genomic buffering mitigates the effects of deleterious mutations in bacteria
    • Maisnier-Patin S, Roth JR, Fredriksson A, Nyström T, Berg OG, et al. (2005) Genomic buffering mitigates the effects of deleterious mutations in bacteria. Nat Genet 37: 1376-1379.
    • (2005) Nat Genet , vol.37 , pp. 1376-1379
    • Maisnier-Patin, S.1    Roth, J.R.2    Fredriksson, A.3    Nyström, T.4    Berg, O.G.5
  • 53
    • 0015187451 scopus 로고
    • Localized mutagenesis of any specific small region of the bacterial chromosome
    • Hong JS, Ames BN, (1971) Localized mutagenesis of any specific small region of the bacterial chromosome. Proc Natl Acad Sci U S A 68: 3158-3162.
    • (1971) Proc Natl Acad Sci U S A , vol.68 , pp. 3158-3162
    • Hong, J.S.1    Ames, B.N.2
  • 54
    • 20944443509 scopus 로고    scopus 로고
    • A complete set of Escherichia coli open reading frames in mobile plasmids facilitating genetic studies
    • Saka K, Tadenuma M, Nakade S, Tanaka N, Sugawara H, et al. (2005) A complete set of Escherichia coli open reading frames in mobile plasmids facilitating genetic studies. DNA Res 12: 63-68.
    • (2005) DNA Res , vol.12 , pp. 63-68
    • Saka, K.1    Tadenuma, M.2    Nakade, S.3    Tanaka, N.4    Sugawara, H.5
  • 55
    • 0025599976 scopus 로고
    • Growth rate dependence of transfer RNA abundance in Escherichia coli
    • Emilsson V, Kurland CG, (1990) Growth rate dependence of transfer RNA abundance in Escherichia coli. EMBO J 9: 4359-4366.
    • (1990) EMBO J , vol.9 , pp. 4359-4366
    • Emilsson, V.1    Kurland, C.G.2
  • 56
    • 0019935329 scopus 로고
    • Quantitative enzymatic hydrolysis of tRNAs: reversed-phase high-performance liquid chromatography of tRNA nucleosides
    • Gehrke CW, Kuo KC, McCune RA, Gerhardt KO, Agris PF, (1982) Quantitative enzymatic hydrolysis of tRNAs: reversed-phase high-performance liquid chromatography of tRNA nucleosides. Journal of Chromatography 230: 297-308.
    • (1982) Journal of Chromatography , vol.230 , pp. 297-308
    • Gehrke, C.W.1    Kuo, K.C.2    McCune, R.A.3    Gerhardt, K.O.4    Agris, P.F.5
  • 57
    • 85012734147 scopus 로고
    • Ribonucleoside analysis by reversed-phase high performance liquid chromatography
    • In: Gehrke CW, Kuo KCT, editors. Chromatography and modification of nucleosides. Part A. Analytical methods for major and modified nucleosides
    • Gehrke CW, Kuo KC (1990) Ribonucleoside analysis by reversed-phase high performance liquid chromatography. In: Gehrke CW, Kuo KCT, editors. Chromatography and modification of nucleosides. Part A. Analytical methods for major and modified nucleosides. J Chromatography Library. Amsterdam: Elsevier. A3-A71.
    • (1990) J Chromatography Library. Amsterdam: Elsevier
    • Gehrke, C.W.1    Kuo, K.C.2
  • 58
    • 0035933316 scopus 로고    scopus 로고
    • Analysis of the roles of tRNA structure, ribosomal protein L9, and the bacteriophage T4 gene 60 bypassing signals during ribosome slippage on mRNA
    • Herr AJ, Nelson CC, Wills NM, Gesteland RF, Atkins JF, (2001) Analysis of the roles of tRNA structure, ribosomal protein L9, and the bacteriophage T4 gene 60 bypassing signals during ribosome slippage on mRNA. J Mol Biol 309: 1029-1048.
    • (2001) J Mol Biol , vol.309 , pp. 1029-1048
    • Herr, A.J.1    Nelson, C.C.2    Wills, N.M.3    Gesteland, R.F.4    Atkins, J.F.5
  • 60
    • 0029914886 scopus 로고    scopus 로고
    • Overexpression of an mRNA dependent on rare codons inhibits protein synthesis and cell growth
    • Zahn K, (1996) Overexpression of an mRNA dependent on rare codons inhibits protein synthesis and cell growth. J Bacteriol 178: 2926-2933.
    • (1996) J Bacteriol , vol.178 , pp. 2926-2933
    • Zahn, K.1
  • 61
    • 20444469682 scopus 로고    scopus 로고
    • Expression Levels Influence Ribosomal Frameshifting at the Tandem Rare Arginine Codons AGG_AGG and AGA_AGA in Escherichia coli
    • Gurvich OL, Baranov PV, Gesteland RF, Atkins JF, (2005) Expression Levels Influence Ribosomal Frameshifting at the Tandem Rare Arginine Codons AGG_AGG and AGA_AGA in Escherichia coli. J Bacteriol 187: 4023-4032.
    • (2005) J Bacteriol , vol.187 , pp. 4023-4032
    • Gurvich, O.L.1    Baranov, P.V.2    Gesteland, R.F.3    Atkins, J.F.4
  • 62
    • 0026350896 scopus 로고
    • Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetase
    • Varshney U, Lee CP, RajBhandary UL, (1991) Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetase. J Biol Chem 266: 24712-24718.
    • (1991) J Biol Chem , vol.266 , pp. 24712-24718
    • Varshney, U.1    Lee, C.P.2    RajBhandary, U.L.3
  • 63
    • 0027165755 scopus 로고
    • Structural basis for transfer RNA aminoacylation by Escherichia coli glutaminyl-tRNA synthetase
    • Perona JJ, Rould MA, Steitz TA, (1993) Structural basis for transfer RNA aminoacylation by Escherichia coli glutaminyl-tRNA synthetase. Biochemistry 32: 8758-8771.
    • (1993) Biochemistry , vol.32 , pp. 8758-8771
    • Perona, J.J.1    Rould, M.A.2    Steitz, T.A.3
  • 64
    • 73649122039 scopus 로고    scopus 로고
    • Evolutionarily conserved proteins MnmE and GidA catalyze the formation of two methyluridine derivatives at tRNA wobble positions
    • Moukadiri I, Prado S, Piera J, Velazquez-Campoy A, Björk GR, et al. (2009) Evolutionarily conserved proteins MnmE and GidA catalyze the formation of two methyluridine derivatives at tRNA wobble positions. Nucleic Acids Res 37: 7177-7193.
    • (2009) Nucleic Acids Res , vol.37 , pp. 7177-7193
    • Moukadiri, I.1    Prado, S.2    Piera, J.3    Velazquez-Campoy, A.4    Björk, G.R.5
  • 65
    • 0023664535 scopus 로고
    • Transfer RNA(5-methylaminomethyl-2-thiouridine)-methyltransferase from Escherichia coli K-12 has two enzymatic activities
    • Hagervall TG, Edmonds CG, McCloskey JA, Björk GR, (1987) Transfer RNA(5-methylaminomethyl-2-thiouridine)-methyltransferase from Escherichia coli K-12 has two enzymatic activities. J Biol Chem 262: 8488-8495.
    • (1987) J Biol Chem , vol.262 , pp. 8488-8495
    • Hagervall, T.G.1    Edmonds, C.G.2    McCloskey, J.A.3    Björk, G.R.4
  • 66
    • 0036955843 scopus 로고    scopus 로고
    • The Cysteine Desulfurase IscS Is Required for Synthesis of All Five Thiolated Nucleosides Present in tRNA from Salmonella enterica Serovar Typhimurium
    • Nilsson K, Lundgren HK, Hagervall TG, Björk GR, (2002) The Cysteine Desulfurase IscS Is Required for Synthesis of All Five Thiolated Nucleosides Present in tRNA from Salmonella enterica Serovar Typhimurium. J Bacteriol 184: 6830-6835.
    • (2002) J Bacteriol , vol.184 , pp. 6830-6835
    • Nilsson, K.1    Lundgren, H.K.2    Hagervall, T.G.3    Björk, G.R.4
  • 67
    • 0036952614 scopus 로고    scopus 로고
    • Requirement for IscS in Biosynthesis of All Thionucleosides in Escherichia coli
    • Lauhon CT, (2002) Requirement for IscS in Biosynthesis of All Thionucleosides in Escherichia coli. J Bacteriol 184: 6820-6829.
    • (2002) J Bacteriol , vol.184 , pp. 6820-6829
    • Lauhon, C.T.1
  • 68
    • 29544452864 scopus 로고    scopus 로고
    • Mechanistic Insights into Sulfur Relay by Multiple Sulfur Mediators Involved in Thiouridine Biosynthesis at tRNA Wobble Positions
    • Ikeuchi Y, Shigi N, Kato J, Nishimura A, Suzuki T, (2006) Mechanistic Insights into Sulfur Relay by Multiple Sulfur Mediators Involved in Thiouridine Biosynthesis at tRNA Wobble Positions. Mol Cell 21: 97-108.
    • (2006) Mol Cell , vol.21 , pp. 97-108
    • Ikeuchi, Y.1    Shigi, N.2    Kato, J.3    Nishimura, A.4    Suzuki, T.5
  • 69
    • 20044392729 scopus 로고    scopus 로고
    • A "gain of function" mutation in a protein mediates production of novel modified nucleosides
    • Chen P, Crain PF, Näsvall SJ, Pomerantz SC, Björk GR, (2005) A "gain of function" mutation in a protein mediates production of novel modified nucleosides. EMBO J 24: 1842-1851.
    • (2005) EMBO J , vol.24 , pp. 1842-1851
    • Chen, P.1    Crain, P.F.2    Näsvall, S.J.3    Pomerantz, S.C.4    Björk, G.R.5
  • 71
    • 0031571595 scopus 로고    scopus 로고
    • Three modified nucleosides present in the anticodon stem and loop influence the in vivo aa-tRNA selection in a tRNA-dependent manner
    • Li JN, Esberg B, Curran JF, Björk GR, (1997) Three modified nucleosides present in the anticodon stem and loop influence the in vivo aa-tRNA selection in a tRNA-dependent manner. J Mol Biol 271: 209-221.
    • (1997) J Mol Biol , vol.271 , pp. 209-221
    • Li, J.N.1    Esberg, B.2    Curran, J.F.3    Björk, G.R.4
  • 72
    • 0003796783 scopus 로고    scopus 로고
    • In:Böck A, Curtiss III R, Kaper JB, Neidhardt FC, Nyström T et al., editors. EcoSal, Cellular and Molecular Biology. Washington DC.: ASM Press
    • Björk GR, Hagervall TG (2005) In:Böck A, Curtiss III R, Kaper JB, Neidhardt FC, Nyström T et al., editors. EcoSal- Escherichia coli and Salmonella. Cellular and Molecular Biology. Washington DC.: ASM Press.
    • (2005) Escherichia coli and Salmonella
    • Björk, G.R.1    Hagervall, T.G.2
  • 73
    • 4644266760 scopus 로고    scopus 로고
    • The modified wobble nucleoside uridine-5-oxyacetic acid in tRNAProcmo5UGG promotes reading of all four proline codons in vivo
    • Näsvall SJ, Chen P, Björk GR, (2004) The modified wobble nucleoside uridine-5-oxyacetic acid in tRNAProcmo5UGG promotes reading of all four proline codons in vivo. RNA 10: 1662-1673.
    • (2004) RNA , vol.10 , pp. 1662-1673
    • Näsvall, S.J.1    Chen, P.2    Björk, G.R.3
  • 74
    • 0026681537 scopus 로고
    • Insertion (sufB) in the anticodon loop or base substitution (sufC) in the anticodon stem of tRNAPro2 from Salmonella typhimurium induces suppression of frameshift mutations
    • Sroga GE, Nemoto F, Kuchino Y, Björk GR, (1992) Insertion (sufB) in the anticodon loop or base substitution (sufC) in the anticodon stem of tRNAPro2 from Salmonella typhimurium induces suppression of frameshift mutations. Nucleic Acids Res 20: 3463-3469.
    • (1992) Nucleic Acids Res , vol.20 , pp. 3463-3469
    • Sroga, G.E.1    Nemoto, F.2    Kuchino, Y.3    Björk, G.R.4
  • 75
    • 0036295962 scopus 로고    scopus 로고
    • A cytosolic tRNA with an unmodified adenosine in the wobble position reads a codon ending with the non-complementary nucleoside cytidine
    • Chen P, Qian Q, Zhang S, Isaksson LA, Björk GR, (2002) A cytosolic tRNA with an unmodified adenosine in the wobble position reads a codon ending with the non-complementary nucleoside cytidine. J Mol Biol 317: 481-492.
    • (2002) J Mol Biol , vol.317 , pp. 481-492
    • Chen, P.1    Qian, Q.2    Zhang, S.3    Isaksson, L.A.4    Björk, G.R.5
  • 76
    • 0344923796 scopus 로고    scopus 로고
    • Structural alterations of the tRNA(m1G37)methyltransferase from Salmonella typhimurium affect tRNA substrate specificity
    • Li JN, Björk GR, (1999) Structural alterations of the tRNA(m1G37)methyltransferase from Salmonella typhimurium affect tRNA substrate specificity. RNA 5: 395-408.
    • (1999) RNA , vol.5 , pp. 395-408
    • Li, J.N.1    Björk, G.R.2
  • 77
    • 84867673706 scopus 로고    scopus 로고
    • Discovery and biological characterization of geranylated RNA in bacteria
    • Dumelin CE, Chen Y, Leconte AM, Chen YG, Liu DR, (2012) Discovery and biological characterization of geranylated RNA in bacteria. Nat Chem Biol 8: 913-919.
    • (2012) Nat Chem Biol , vol.8 , pp. 913-919
    • Dumelin, C.E.1    Chen, Y.2    Leconte, A.M.3    Chen, Y.G.4    Liu, D.R.5
  • 78
    • 0015527014 scopus 로고
    • Frameshift suppressors. II. Genetic mapping and dominance studies
    • Riddle DL, Roth JR, (1972) Frameshift suppressors. II. Genetic mapping and dominance studies. J Mol Biol 66: 483-493.
    • (1972) J Mol Biol , vol.66 , pp. 483-493
    • Riddle, D.L.1    Roth, J.R.2
  • 79
    • 0030564828 scopus 로고    scopus 로고
    • Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
    • Dong HJ, Nilsson L, Kurland CG, (1996) Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J Mol Biol 260: 649-663.
    • (1996) J Mol Biol , vol.260 , pp. 649-663
    • Dong, H.J.1    Nilsson, L.2    Kurland, C.G.3
  • 80
    • 77951974177 scopus 로고    scopus 로고
    • Structural aspects of messenger RNA reading frame maintenance by the ribosome
    • Jenner LB, Demeshkina N, Yusupova G, Yusupov M, (2010) Structural aspects of messenger RNA reading frame maintenance by the ribosome. Nat Struct Mol Biol 17: 555-560.
    • (2010) Nat Struct Mol Biol , vol.17 , pp. 555-560
    • Jenner, L.B.1    Demeshkina, N.2    Yusupova, G.3    Yusupov, M.4
  • 82
    • 0030885156 scopus 로고    scopus 로고
    • A Tn10 derivative (T-POP) for isolation of insertions with conditional (tetracycline-dependent) phenotypes
    • Rappleye CA, Roth JR, (1997) A Tn10 derivative (T-POP) for isolation of insertions with conditional (tetracycline-dependent) phenotypes. J Bacteriol 179: 5827-5834.
    • (1997) J Bacteriol , vol.179 , pp. 5827-5834
    • Rappleye, C.A.1    Roth, J.R.2
  • 83
    • 0017165552 scopus 로고
    • Tandem duplications of the histidine operon observed following generalized transduction in Salmonella typhimurium
    • Anderson RP, Miller CG, Roth JR, (1976) Tandem duplications of the histidine operon observed following generalized transduction in Salmonella typhimurium. J Mol Biol 105: 201-218.
    • (1976) J Mol Biol , vol.105 , pp. 201-218
    • Anderson, R.P.1    Miller, C.G.2    Roth, J.R.3
  • 84
    • 34948858455 scopus 로고    scopus 로고
    • Alterations in the two globular domains or in the connecting {alpha}-helix of bacterial ribosomal protein L9 induces +1 frameshifts
    • Leipuviene R, Björk GR, (2007) Alterations in the two globular domains or in the connecting {alpha}-helix of bacterial ribosomal protein L9 induces +1 frameshifts. J Bacteriol 189: 7024-7031.
    • (2007) J Bacteriol , vol.189 , pp. 7024-7031
    • Leipuviene, R.1    Björk, G.R.2
  • 85
    • 0032725978 scopus 로고    scopus 로고
    • Identification of the miaB gene, involved in methylthiolation of isopentenylated A37 derivatives in the tRNA of Salmonella typhimurium and Escherichia coli
    • Esberg B, Leung HC, Tsui HC, Björk GR, Winkler ME, (1999) Identification of the miaB gene, involved in methylthiolation of isopentenylated A37 derivatives in the tRNA of Salmonella typhimurium and Escherichia coli. J Bacteriol 181: 7256-7265.
    • (1999) J Bacteriol , vol.181 , pp. 7256-7265
    • Esberg, B.1    Leung, H.C.2    Tsui, H.C.3    Björk, G.R.4    Winkler, M.E.5
  • 86
    • 3142562521 scopus 로고    scopus 로고
    • Maintaining the ribosomal reading frame: the influence of the E site during translational regulation of release factor 2
    • Márquez V, Wilson DN, Tate WP, Triana-Alonso F, Nierhaus KH, (2004) Maintaining the ribosomal reading frame: the influence of the E site during translational regulation of release factor 2. Cell 118: 45-55.
    • (2004) Cell , vol.118 , pp. 45-55
    • Márquez, V.1    Wilson, D.N.2    Tate, W.P.3    Triana-Alonso, F.4    Nierhaus, K.H.5
  • 87
    • 34548346899 scopus 로고    scopus 로고
    • Genetic analysis of the E site during RF2 programmed frameshifting
    • Sanders CL, Curran JF, (2007) Genetic analysis of the E site during RF2 programmed frameshifting. RNA 13: 1483-1491.
    • (2007) RNA , vol.13 , pp. 1483-1491
    • Sanders, C.L.1    Curran, J.F.2
  • 89
    • 0345826117 scopus 로고    scopus 로고
    • Functional diversity of the rhodanese homology domain: the Escherichia coli ybbB gene encodes a selenophosphate-dependent tRNA 2-selenouridine synthase
    • Wolfe MD, Ahmed F, Lacourciere GM, Lauhon CT, Stadtman TC, et al. (2004) Functional diversity of the rhodanese homology domain: the Escherichia coli ybbB gene encodes a selenophosphate-dependent tRNA 2-selenouridine synthase. J Biol Chem 279: 1801-1809.
    • (2004) J Biol Chem , vol.279 , pp. 1801-1809
    • Wolfe, M.D.1    Ahmed, F.2    Lacourciere, G.M.3    Lauhon, C.T.4    Stadtman, T.C.5


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