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Volumn 279, Issue 4, 1998, Pages 727-736

tRNA imbalance promotes -1 frameshifting via near-cognate decoding

Author keywords

Decoding; Frameshifting; Translation; tRNA imbalance

Indexed keywords

GLYCINE TRANSFER RNA; TRANSFER RNA;

EID: 0032546761     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.1832     Document Type: Article
Times cited : (37)

References (46)
  • 3
    • 0024415902 scopus 로고
    • Codon recognition patterns as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum: Resemblance to mitochondria
    • Andachi, Y., Yamao, F., Muto, A. & Osawa, S. (1989). Codon recognition patterns as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum: resemblance to mitochondria. J. Mol. Biol. 209, 37-54.
    • (1989) J. Mol. Biol. , vol.209 , pp. 37-54
    • Andachi, Y.1    Yamao, F.2    Muto, A.3    Osawa, S.4
  • 4
    • 0018602513 scopus 로고
    • Normal tRNAs promote ribosomal frameshifting
    • Atkins, J. F., Gesteland, R. F., Reid, B. R. & Anderson, C. W. (1979). Normal tRNAs promote ribosomal frameshifting. Cell, 18, 1119-1131.
    • (1979) Cell , vol.18 , pp. 1119-1131
    • Atkins, J.F.1    Gesteland, R.F.2    Reid, B.R.3    Anderson, C.W.4
  • 5
    • 0026317770 scopus 로고
    • Towards a genetic dissection of the basis of triplet decoding, and its natural subversion: Programmed reading frame shifts and hops
    • Atkins, J. F., Weiss, R. B., Thompson, S. & Gesteland, R. F. (1991). Towards a genetic dissection of the basis of triplet decoding, and its natural subversion: programmed reading frame shifts and hops. Annu. Rev. Genet. 25, 201-228.
    • (1991) Annu. Rev. Genet. , vol.25 , pp. 201-228
    • Atkins, J.F.1    Weiss, R.B.2    Thompson, S.3    Gesteland, R.F.4
  • 6
    • 0025303605 scopus 로고
    • Ribosomal frameshifting in the yeast retrotransposon Ty: TRNAs induce slippage on a 7 nucleotide minimal site
    • Belcourt, M. F. & Farabaugh, P. J. (1990). Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site. Cell, 62, 339-352.
    • (1990) Cell , vol.62 , pp. 339-352
    • Belcourt, M.F.1    Farabaugh, P.J.2
  • 7
    • 0002739485 scopus 로고    scopus 로고
    • Linkage map of Escherichia coli K12
    • edition 9. In Escherichia coli and Salmonella. Neidhardt, F. C., Cuttiss, R., Ingraham, J. L., Lin, E. C., Low, K. B., Magasanik, B., Reznikoff, W. S., Riley, M., Schaechter, M. & Umbarger, H. E., eds, 2nd edit., American Society for Microbiology, Washington, DC
    • Berlyn, M. K., Low, K. B. & Rudd, K. (1996). Linkage map of Escherichia coli K12, edition 9. In Escherichia coli and Salmonella. Cellular and Molecular Biology (Neidhardt, F. C., Cuttiss, R., Ingraham, J. L., Lin, E. C., Low, K. B., Magasanik, B., Reznikoff, W. S., Riley, M., Schaechter, M. & Umbarger, H. E., eds), 2nd edit., pp. 1715-1902, American Society for Microbiology, Washington, DC.
    • (1996) Cellular and Molecular Biology , pp. 1715-1902
    • Berlyn, M.K.1    Low, K.B.2    Rudd, K.3
  • 8
    • 0021716708 scopus 로고
    • Kinetic impairment of restrictive streptomycin-resistant ribosomes
    • Bohman, K., Russala, T., Jelenc, P. C. & Kurland, C. G. (1984). Kinetic impairment of restrictive streptomycin-resistant ribosomes. Mol. Gen. Genet. 198, 90-99.
    • (1984) Mol. Gen. Genet. , vol.198 , pp. 90-99
    • Bohman, K.1    Russala, T.2    Jelenc, P.C.3    Kurland, C.G.4
  • 9
    • 0021733728 scopus 로고
    • Suppressor sufJ: A novel type of tRNA that induces translational frameshifting
    • Bossi, L. & Smith, D. M. (1984). Suppressor sufJ: a novel type of tRNA that induces translational frameshifting. Proc. Natl Acad. Sci. USA, 81, 6105-6109.
    • (1984) Proc. Natl Acad. Sci. USA , vol.81 , pp. 6105-6109
    • Bossi, L.1    Smith, D.M.2
  • 10
    • 0022743642 scopus 로고
    • tRNA anticodon replacement experiments show that ribosomal frameshifting can be caused by doublet decoding
    • Bruce, A. G., Atkins, J. F. & Gesteland, R. F. (1986). tRNA anticodon replacement experiments show that ribosomal frameshifting can be caused by doublet decoding. Proc. Natl Acad. Sci. USA, 83, 5062-5066.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 5062-5066
    • Bruce, A.G.1    Atkins, J.F.2    Gesteland, R.F.3
  • 11
    • 0014966266 scopus 로고
    • Glycine transfer RNA of Escherichia coli. II. Impaired GGA recognition in strains containing a genetically altered transfer RNA: Reversal by a secondary suppressor mutation
    • Carbon, J., Squires, C. & Hill, C. W. (1970). Glycine transfer RNA of Escherichia coli. II. Impaired GGA recognition in strains containing a genetically altered transfer RNA: reversal by a secondary suppressor mutation. J. Mol. Biol. 52, 571-584.
    • (1970) J. Mol. Biol. , vol.52 , pp. 571-584
    • Carbon, J.1    Squires, C.2    Hill, C.W.3
  • 12
    • 0017807890 scopus 로고
    • Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid
    • Chang, A. C. Y. & Cohen, S. N. (1978). Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid. J. Bacteriol. 134, 1141-1156.
    • (1978) J. Bacteriol. , vol.134 , pp. 1141-1156
    • Chang, A.C.Y.1    Cohen, S.N.2
  • 13
    • 0021943866 scopus 로고
    • Supercoil sequencing: A fast and simple method for sequencing plasmid DNA
    • Chen, E. Y. & Seeburg, P. H. (1985). Supercoil sequencing: a fast and simple method for sequencing plasmid DNA. DNA, 4, 165-170.
    • (1985) DNA , vol.4 , pp. 165-170
    • Chen, E.Y.1    Seeburg, P.H.2
  • 15
    • 0023623660 scopus 로고
    • Reading frame selection and transfer RNA anticodon loop stacking
    • Curran, J. F. & Yarus, M. (1987). Reading frame selection and transfer RNA anticodon loop stacking. Science, 238, 1545-1550.
    • (1987) Science , vol.238 , pp. 1545-1550
    • Curran, J.F.1    Yarus, M.2
  • 16
    • 0030564828 scopus 로고    scopus 로고
    • Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
    • Dong, H., Nilsson, L. & Kurland, C. G. (1996). Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J. Mol. Biol. 260, 649-663.
    • (1996) J. Mol. Biol. , vol.260 , pp. 649-663
    • Dong, H.1    Nilsson, L.2    Kurland, C.G.3
  • 17
    • 0024205517 scopus 로고
    • Mutants of translational components that alter reading frame by 2 steps forward or 1 step back
    • Falahee, M. B., Weiss, R. B., O'Connor, M., Doonan, S., Gesteland, R. F. & Atkins, J. F. (1988). Mutants of translational components that alter reading frame by 2 steps forward or 1 step back. J. Biol. Chem. 263, 18099-18103.
    • (1988) J. Biol. Chem. , vol.263 , pp. 18099-18103
    • Falahee, M.B.1    Weiss, R.B.2    O'Connor, M.3    Doonan, S.4    Gesteland, R.F.5    Atkins, J.F.6
  • 18
    • 0014966259 scopus 로고
    • Glycine transfer RNA of Escherichia coli. I. Structural genes for two glycine tRNA species
    • Hill, C. W., Squires, C. & Carbon, J. (1970). Glycine transfer RNA of Escherichia coli. I. Structural genes for two glycine tRNA species. J. Mol. Biol. 52, 557-569.
    • (1970) J. Mol. Biol. , vol.52 , pp. 557-569
    • Hill, C.W.1    Squires, C.2    Carbon, J.3
  • 19
    • 0023581906 scopus 로고
    • Allele-specific complementation of an Escherichia coli leuB mutation by a Lactobacillus bulgaricus tRNA gene
    • Hottinger, H., Ohgi, T., Zwahlen, M-C., Dhamija, S. & Söll, D. (1987). Allele-specific complementation of an Escherichia coli leuB mutation by a Lactobacillus bulgaricus tRNA gene. Gene, 60, 75-83.
    • (1987) Gene , vol.60 , pp. 75-83
    • Hottinger, H.1    Ohgi, T.2    Zwahlen, M.-C.3    Dhamija, S.4    Söll, D.5
  • 21
    • 0025888264 scopus 로고
    • Efficient site directed mutagenesis using uracil-containing DNA
    • Kunkel, T. A., Bebenek, K. & Mc Clary, J. (1991). Efficient site directed mutagenesis using uracil-containing DNA. Methods Enzymol. 204, 125-139.
    • (1991) Methods Enzymol. , vol.204 , pp. 125-139
    • Kunkel, T.A.1    Bebenek, K.2    Mc Clary, J.3
  • 22
    • 0345345078 scopus 로고
    • "Two out of three": An alternative method for codon reading
    • Lagerkvist, U. (1978). "Two out of three": an alternative method for codon reading. Proc. Natl Acad. Sci. USA, 75, 1759-1762.
    • (1978) Proc. Natl Acad. Sci. USA , vol.75 , pp. 1759-1762
    • Lagerkvist, U.1
  • 23
    • 0027278660 scopus 로고
    • On the directional specificity of ribosome frameshifting at a "hungry" codon
    • Lindsey, D. & Gallant, J. (1993). On the directional specificity of ribosome frameshifting at a "hungry" codon. Proc. Natl Acad. Sci. USA, 90, 5469-5473.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 5469-5473
    • Lindsey, D.1    Gallant, J.2
  • 24
    • 0022921901 scopus 로고
    • Mutations in a new chromosomal gene of Escherichia coli K12, pcnB, reduce plasmid copy number of pBR322 and its derivatives
    • Lopilato, J., Bortner, S. & Beckwith, J. (1986). Mutations in a new chromosomal gene of Escherichia coli K12, pcnB, reduce plasmid copy number of pBR322 and its derivatives. Mol. Gen. Genet. 205, 285-290.
    • (1986) Mol. Gen. Genet. , vol.205 , pp. 285-290
    • Lopilato, J.1    Bortner, S.2    Beckwith, J.3
  • 25
    • 0027530123 scopus 로고
    • The nucleotide in position 32 of the tRNA anticodon loop determines ability of anticodon UCC to discriminate among glycine codons
    • Lustig, F., Borén, T., Claesson, C., Simonsson, C., Barciszewska, M. & Lagerkvist, U. (1993). The nucleotide in position 32 of the tRNA anticodon loop determines ability of anticodon UCC to discriminate among glycine codons. Proc. Natl Acad. Sci. USA, 90, 3343-3347.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 3343-3347
    • Lustig, F.1    Borén, T.2    Claesson, C.3    Simonsson, C.4    Barciszewska, M.5    Lagerkvist, U.6
  • 26
    • 0003842951 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Miller, J. H (1991). A Short Course in Bacterial Genetics, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1991) A Short Course in Bacterial Genetics
    • Miller, J.H.1
  • 27
    • 0022328469 scopus 로고
    • tRNA, suppression and the code
    • Murgola, E. J. (1985). tRNA, suppression and the code. Annu. Rev. Genet. 19, 57-80.
    • (1985) Annu. Rev. Genet. , vol.19 , pp. 57-80
    • Murgola, E.J.1
  • 28
    • 0027375408 scopus 로고
    • Mutations at U2555, a tRNA-protected base in 23S rRNA, affect translational fidelity
    • O'Connor, M. & Dahlberg, A. E. (1993). Mutations at U2555, a tRNA-protected base in 23S rRNA, affect translational fidelity. Proc. Natl Acad. Sci. USA, 90, 9214-9218.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 9214-9218
    • O'Connor, M.1    Dahlberg, A.E.2
  • 29
    • 0024790054 scopus 로고
    • tRNA hopping: Enhancement by an expanded anticodon
    • O'Connor, M., Gesteland, R. F. & Atkins, J. F. (1989). tRNA hopping: enhancement by an expanded anticodon. EMBO J. 8, 4315-4323.
    • (1989) EMBO J. , vol.8 , pp. 4315-4323
    • O'Connor, M.1    Gesteland, R.F.2    Atkins, J.F.3
  • 31
    • 0025643358 scopus 로고
    • Genomic replacement in Escherichia coli K-12 using covalently closed circular plasmid DNA
    • Oden, K. L., DeVeaux, L. C., Vibat, C. R. T., Cronan, J. E. & Gennis, R. B. (1990). Genomic replacement in Escherichia coli K-12 using covalently closed circular plasmid DNA. Gene, 96, 29-36.
    • (1990) Gene , vol.96 , pp. 29-36
    • Oden, K.L.1    DeVeaux, L.C.2    Vibat, C.R.T.3    Cronan, J.E.4    Gennis, R.B.5
  • 33
    • 0024317297 scopus 로고
    • Suppression of a -1 frameshift mutation by a recessive tRNA suppressor which causes doublet decoding
    • O'Mahony, D. J., Hughes, D., Thompson, S. & Atkins, J. F. (1989b). Suppression of a -1 frameshift mutation by a recessive tRNA suppressor which causes doublet decoding. J. Bacteriol. 171, 3824-3830.
    • (1989) J. Bacteriol. , vol.171 , pp. 3824-3830
    • O'Mahony, D.J.1    Hughes, D.2    Thompson, S.3    Atkins, J.F.4
  • 36
    • 0029816377 scopus 로고    scopus 로고
    • Transfer RNA structural change is a key element in the reassignment of the CUG codon in Candida albicans
    • Santos, A. S., Perreau, V. M. & Tuite, M. F. (1996). Transfer RNA structural change is a key element in the reassignment of the CUG codon in Candida albicans. EMBO J. 15, 5060-5068.
    • (1996) EMBO J. , vol.15 , pp. 5060-5068
    • Santos, A.S.1    Perreau, V.M.2    Tuite, M.F.3
  • 37
    • 0024271795 scopus 로고
    • Antibiotic resistance mutations in ribosomal RNA genes of Escherichia coli
    • Sigmund, C. D., Ettayebi, M., Borden, A. & Morgan, E. A. (1988). Antibiotic resistance mutations in ribosomal RNA genes of Escherichia coli. Methods Enzymol. 164, 673-690.
    • (1988) Methods Enzymol. , vol.164 , pp. 673-690
    • Sigmund, C.D.1    Ettayebi, M.2    Borden, A.3    Morgan, E.A.4
  • 39
    • 0000516715 scopus 로고
    • Translation of the sequence AGG-AGG yields 50% ribosomal frameshift
    • Spanjaard, R. A. & van Duin, J. (1988). Translation of the sequence AGG-AGG yields 50% ribosomal frameshift. Proc. Natl Acad. Sci. USA, 85, 7967-7971.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 7967-7971
    • Spanjaard, R.A.1    Van Duin, J.2
  • 40
    • 0015242525 scopus 로고
    • Normal and mutant glycine transfer RNAs
    • Squires, C. & Carbon, J. (1971). Normal and mutant glycine transfer RNAs. Nature New Biol. 233, 274-277.
    • (1971) Nature New Biol. , vol.233 , pp. 274-277
    • Squires, C.1    Carbon, J.2
  • 41
    • 0023661095 scopus 로고
    • The tRNA-tufB operon transcription termination and processing upstream from tufB
    • van Delft, J. H. M., Schmidt, D. S. & Bosch, L. (1987). The tRNA-tufB operon transcription termination and processing upstream from tufB. J. Mol. Biol. 197, 647-657.
    • (1987) J. Mol. Biol. , vol.197 , pp. 647-657
    • Van Delft, J.H.M.1    Schmidt, D.S.2    Bosch, L.3
  • 42
    • 77049313195 scopus 로고
    • Acetylornithinase of Escherichia coli: Partial ourification and some properties
    • Vogel, H. J. & Bonner, D. M. (1956). Acetylornithinase of Escherichia coli: partial ourification and some properties. J. Biol. Chem. 218, 97-106.
    • (1956) J. Biol. Chem. , vol.218 , pp. 97-106
    • Vogel, H.J.1    Bonner, D.M.2
  • 43
    • 0025329221 scopus 로고
    • Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli
    • Wagner, L. A., Weiss, R. B., Driscoll, R., Dunn, D. S. & Gesteland, R. F. (1990). Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli. Nucl. Acids Res. 18, 3529-3535.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 3529-3535
    • Wagner, L.A.1    Weiss, R.B.2    Driscoll, R.3    Dunn, D.S.4    Gesteland, R.F.5
  • 44
    • 0022552850 scopus 로고
    • Novel regulatory mutants of the phosphate regulon of Escherichia coli K12
    • Wanner, B. L. (1986). Novel regulatory mutants of the phosphate regulon of Escherichia coli K12. J. Mol. Biol. 191, 399-458.
    • (1986) J. Mol. Biol. , vol.191 , pp. 399-458
    • Wanner, B.L.1
  • 46
    • 0030974929 scopus 로고    scopus 로고
    • Reversion rates in a leuB auxotroph of Escherichia coli K-12 correlate with ppGpp levels during exponential growth
    • Wright, B. E. & Minnick, M. F. (1997). Reversion rates in a leuB auxotroph of Escherichia coli K-12 correlate with ppGpp levels during exponential growth. Microbiology, 143, 847-854.
    • (1997) Microbiology , vol.143 , pp. 847-854
    • Wright, B.E.1    Minnick, M.F.2


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