-
1
-
-
34247158281
-
Identification of a third human polyomavirus
-
Allander T, Andreasson K, Gupta S, Bjerkner A, Bogdanovic G, et al. 2007. Identification of a third human polyomavirus. J. Virol. 81:4130-4136.
-
(2007)
J. Virol.
, vol.81
, pp. 4130-4136
-
-
Allander, T.1
Andreasson, K.2
Gupta, S.3
Bjerkner, A.4
Bogdanovic, G.5
-
2
-
-
35748967859
-
THOR: targeted high-throughput ortholog reconstructor
-
Bainbridge MN, Warren RL, He A, Bilenky M, Robertson AG, Jones SJ. 2007. THOR: targeted high-throughput ortholog reconstructor. Bioinformatics 23:2622-2624.
-
(2007)
Bioinformatics
, vol.23
, pp. 2622-2624
-
-
Bainbridge, M.N.1
Warren, R.L.2
He, A.3
Bilenky, M.4
Robertson, A.G.5
Jones, S.J.6
-
3
-
-
34548119847
-
A newly reported human polyomavirus, KI virus, is present in the respiratory tract of Australian children
-
Bialasiewicz S, Whiley DM, Lambert SB, Wang D, Nissen MD, Sloots TP. 2007. A newly reported human polyomavirus, KI virus, is present in the respiratory tract of Australian children. J. Clin. Virol. 40:15-18.
-
(2007)
J. Clin. Virol.
, vol.40
, pp. 15-18
-
-
Bialasiewicz, S.1
Whiley, D.M.2
Lambert, S.B.3
Wang, D.4
Nissen, M.D.5
Sloots, T.P.6
-
4
-
-
34547834963
-
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing
-
Binladen J, Gilbert MT, Bollback JP, Panitz F, Bendixen C, et al. 2007. The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS ONE 2:e197.
-
(2007)
PLoS ONE
, vol.2
-
-
Binladen, J.1
Gilbert, M.T.2
Bollback, J.P.3
Panitz, F.4
Bendixen, C.5
-
5
-
-
67249156188
-
Genetic detection and characterization of Lujo virus, a new hemorrhagic fever-associated arenavirus from southern Africa
-
Briese T, Paweska JT, McMullan LK, Hutchison SK, Street C, et al. 2009. Genetic detection and characterization of Lujo virus, a new hemorrhagic fever-associated arenavirus from southern Africa. PLoS Pathog. 5:e1000455.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Briese, T.1
Paweska, J.T.2
McMullan, L.K.3
Hutchison, S.K.4
Street, C.5
-
6
-
-
35348853758
-
A metagenomic survey of microbes in honey bee colony collapse disorder
-
Cox-Foster DL, Conlan S, Holmes EC, Palacios G, Evans JD, et al. 2007. A metagenomic survey of microbes in honey bee colony collapse disorder. Science 318:283-287.
-
(2007)
Science
, vol.318
, pp. 283-287
-
-
Cox-Foster, D.L.1
Conlan, S.2
Holmes, E.C.3
Palacios, G.4
Evans, J.D.5
-
7
-
-
55849124028
-
Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood
-
Fan HC, Blumenfeld YJ, Chitkara U, Hudgins L, Quake SR. 2008. Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood. Proc. Natl. Acad. Sci. USA 105:16266-16271.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 16266-16271
-
-
Fan, H.C.1
Blumenfeld, Y.J.2
Chitkara, U.3
Hudgins, L.4
Quake, S.R.5
-
8
-
-
39749113080
-
Clonal integration of a polyomavirus in human Merkel cell carcinoma
-
Feng H, Shuda M, Chang Y, Moore PS. 2008. Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science 319:1096-1100.
-
(2008)
Science
, vol.319
, pp. 1096-1100
-
-
Feng, H.1
Shuda, M.2
Chang, Y.3
Moore, P.S.4
-
9
-
-
37349104272
-
Nucleic acid amplification tests for detection of respiratory viruses
-
Fox JD. 2007. Nucleic acid amplification tests for detection of respiratory viruses. J. Clin. Virol. 40(Suppl. 1): S15-S23.
-
(2007)
J. Clin. Virol.
, vol.40
, Issue.SUPPL. 1
-
-
Fox, J.D.1
-
10
-
-
34249650137
-
Identification of a novel polyomavirus from patients with acute respiratory tract infections
-
Gaynor AM, Nissen MD, Whiley DM, Mackay IM, Lambert SB, et al. 2007. Identification of a novel polyomavirus from patients with acute respiratory tract infections. PLoS Pathog. 3:e64.
-
(2007)
PLoS Pathog.
, vol.3
-
-
Gaynor, A.M.1
Nissen, M.D.2
Whiley, D.M.3
Mackay, I.M.4
Lambert, S.B.5
-
11
-
-
33746605947
-
A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes
-
Goldberg SM, Johnson J, Busam D, Feldblyum T, Ferriera S, et al. 2006. A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes. Proc. Natl. Acad. Sci. USA 103:11240-11245.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 11240-11245
-
-
Goldberg, S.M.1
Johnson, J.2
Busam, D.3
Feldblyum, T.4
Ferriera, S.5
-
12
-
-
52449122074
-
BioRuby: Open-Source Bioinformatics Library
-
Goto N, Nakao MC, Kawashima S, Katayama T, Kanehisa M. 2003. BioRuby: Open-Source Bioinformatics Library. Genome Informatics 14:629-630.
-
(2003)
Genome Informatics
, vol.14
, pp. 629-630
-
-
Goto, N.1
Nakao, M.C.2
Kawashima, S.3
Katayama, T.4
Kanehisa, M.5
-
13
-
-
43049120664
-
Human-like receptor specificity does not affect the neuraminidase-inhibitor susceptibility of H5N1 influenza viruses
-
Ilyushina NA, Govorkova EA, Gray TE, Bovin NV, Webster RG. 2008. Human-like receptor specificity does not affect the neuraminidase-inhibitor susceptibility of H5N1 influenza viruses. PLoS Pathog. 4:e1000043.
-
(2008)
PLoS Pathog.
, vol.4
-
-
Ilyushina, N.A.1
Govorkova, E.A.2
Gray, T.E.3
Bovin, N.V.4
Webster, R.G.5
-
14
-
-
33745157184
-
Coronavirus HKU1 and other coronavirus infections in Hong Kong
-
Lau SK, Woo PC, Yip CC, Tse H, Tsoi HW, et al. 2006. Coronavirus HKU1 and other coronavirus infections in Hong Kong. J. Clin. Microbiol. 44:2063-2071.
-
(2006)
J. Clin. Microbiol.
, vol.44
, pp. 2063-2071
-
-
Lau, S.K.1
Woo, P.C.2
Yip, C.C.3
Tse, H.4
Tsoi, H.W.5
-
15
-
-
15844407954
-
Sequence and genomic organization of GBV-C: A novel member of the flaviviridae associated with human non-A-E hepatitis
-
Leary TP, Muerhoff AS, Simons JN, Pilot-Matias TJ, Erker JC, et al. 1996. Sequence and genomic organization of GBV-C: A novel member of the flaviviridae associated with human non-A-E hepatitis. J. Med. Virol. 48:60-67.
-
(1996)
J. Med. Virol.
, vol.48
, pp. 60-67
-
-
Leary, T.P.1
Muerhoff, A.S.2
Simons, J.N.3
Pilot-Matias, T.J.4
Erker, J.C.5
-
16
-
-
33645464302
-
Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays
-
Lin B, Wang Z, Vora GJ, Thornton JA, Schnur JM, et al. 2006. Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays. Genome Res. 16:527-535.
-
(2006)
Genome Res.
, vol.16
, pp. 527-535
-
-
Lin, B.1
Wang, Z.2
Vora, G.J.3
Thornton, J.A.4
Schnur, J.M.5
-
17
-
-
39849097577
-
Mechanisms of GII.4 norovirus persistence in human populations
-
Lindesmith LC, Donaldson EF, Lobue AD, Cannon JL, Zheng DP, et al. 2008. Mechanisms of GII.4 norovirus persistence in human populations. PLoS Med. 5:e31.
-
(2008)
PLoS Med.
, vol.5
-
-
Lindesmith, L.C.1
Donaldson, E.F.2
Lobue, A.D.3
Cannon, J.L.4
Zheng, D.P.5
-
18
-
-
39849096606
-
The evolution of norovirus, the "gastric flu"
-
Lopman B, Zambon M, Brown DW. 2008. The evolution of norovirus, the "gastric flu". PLoS Med. 5:e42.
-
(2008)
PLoS Med.
, vol.5
-
-
Lopman, B.1
Zambon, M.2
Brown, D.W.3
-
19
-
-
41349084225
-
Adding pathogens by genomic subtraction
-
MacConaill L, Meyerson M. 2008. Adding pathogens by genomic subtraction. Nat. Genet. 40:380-382.
-
(2008)
Nat. Genet.
, vol.40
, pp. 380-382
-
-
MacConaill, L.1
Meyerson, M.2
-
20
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. 2005. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
-
21
-
-
39449089394
-
Parallel tagged sequencing on the 454 platform
-
Meyer M, Stenzel U, Hofreiter M. 2008. Parallel tagged sequencing on the 454 platform. Nat. Protoc. 3:267-278.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 267-278
-
-
Meyer, M.1
Stenzel, U.2
Hofreiter, M.3
-
22
-
-
33748685014
-
Rapid and accurate pyrosequencing of angiosperm plastid genomes
-
Moore MJ, Dhingra A, Soltis PS, Shaw R, Farmerie WG, et al. 2006. Rapid and accurate pyrosequencing of angiosperm plastid genomes. BMC Plant Biol. 6:17.
-
(2006)
BMC Plant Biol.
, vol.6
, pp. 17
-
-
Moore, M.J.1
Dhingra, A.2
Soltis, P.S.3
Shaw, R.4
Farmerie, W.G.5
-
23
-
-
55549099265
-
Metagenomic diagnosis of bacterial infections
-
Nakamura S, Maeda N, Miron IM, Yoh M, Izutsu K, et al. 2008. Metagenomic diagnosis of bacterial infections. Emerg. Infect. Dis. 14:1784-1786.
-
(2008)
Emerg. Infect. Dis.
, vol.14
, pp. 1784-1786
-
-
Nakamura, S.1
Maeda, N.2
Miron, I.M.3
Yoh, M.4
Izutsu, K.5
-
24
-
-
64149083137
-
Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach
-
Nakamura S, Yang CS, Sakon N, Ueda M, Tougan T, et al. 2009. Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach. PLoS One 4:e4219.
-
(2009)
PLoS One
, vol.4
-
-
Nakamura, S.1
Yang, C.S.2
Sakon, N.3
Ueda, M.4
Tougan, T.5
-
25
-
-
36348933323
-
No evidence for an association between infections with WU and KI polyomaviruses and respiratory disease
-
Norja P, Ubillos I, Templeton K, Simmonds P. 2007. No evidence for an association between infections with WU and KI polyomaviruses and respiratory disease. J. Clin. Virol. 40:307-311.
-
(2007)
J. Clin. Virol.
, vol.40
, pp. 307-311
-
-
Norja, P.1
Ubillos, I.2
Templeton, K.3
Simmonds, P.4
-
26
-
-
40449115382
-
A new arenavirus in a cluster of fatal transplant-associated diseases
-
Palacios G, Druce J, Du L, Tran T, Birch C, et al. 2008. A new arenavirus in a cluster of fatal transplant-associated diseases. N. Engl. J. Med. 358:991-998.
-
(2008)
N. Engl. J. Med.
, vol.358
, pp. 991-998
-
-
Palacios, G.1
Druce, J.2
Du, L.3
Tran, T.4
Birch, C.5
-
27
-
-
31144442151
-
Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA
-
Poinar HN, Schwarz C, Qi J, Shapiro B, Macphee RD, et al. 2006. Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA. Science 311:392-394.
-
(2006)
Science
, vol.311
, pp. 392-394
-
-
Poinar, H.N.1
Schwarz, C.2
Qi, J.3
Shapiro, B.4
Macphee, R.D.5
-
28
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, et al. 2007. SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35:7188-7196.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
-
29
-
-
34548084879
-
Detection of respiratory viruses and subtype identification of influenza A viruses by GreeneChipResp oligonucleotide microarray
-
Quan PL, Palacios G, Jabado OJ, Conlan S, Hirschberg DL, et al. 2007. Detection of respiratory viruses and subtype identification of influenza A viruses by GreeneChipResp oligonucleotide microarray. J. Clin. Microbiol. 45:2359-2364.
-
(2007)
J. Clin. Microbiol.
, vol.45
, pp. 2359-2364
-
-
Quan, P.L.1
Palacios, G.2
Jabado, O.J.3
Conlan, S.4
Hirschberg, D.L.5
-
30
-
-
33745877608
-
Design, development and evaluation of a competitive RT-PCR for quantitation of GBV-C RNA
-
Ruiz V, Espinola L, Mathet VL, Perandones CE, Oubina J. 2006. Design, development and evaluation of a competitive RT-PCR for quantitation of GBV-C RNA. J. Virol. Methods 136:58-64.
-
(2006)
J. Virol. Methods
, vol.136
, pp. 58-64
-
-
Ruiz, V.1
Espinola, L.2
Mathet, V.L.3
Perandones, C.E.4
Oubina, J.5
-
31
-
-
34548271020
-
An improved procedure for rapid determination of viral RNA sequences of avian RNA viruses
-
Sakai K, Mizutani T, Fukushi S, Saijo M, Endoh D, et al. 2007. An improved procedure for rapid determination of viral RNA sequences of avian RNA viruses. Arch. Virol. 152:1763-1765.
-
(2007)
Arch. Virol.
, vol.152
, pp. 1763-1765
-
-
Sakai, K.1
Mizutani, T.2
Fukushi, S.3
Saijo, M.4
Endoh, D.5
-
32
-
-
36549018102
-
Norovirus storm in Osaka, Japan, last winter (2006/2007)
-
Sakon N, Yamazaki K, Yoda T, Tsukamoto T, Kase T, et al. 2007. Norovirus storm in Osaka, Japan, last winter (2006/2007). Jpn. J. Infect. Dis. 60:409-410.
-
(2007)
Jpn. J. Infect. Dis.
, vol.60
, pp. 409-410
-
-
Sakon, N.1
Yamazaki, K.2
Yoda, T.3
Tsukamoto, T.4
Kase, T.5
-
33
-
-
43049142939
-
Sequence determination of a mildly virulent strain (CU-2) of Gallid herpesvirus type 2 using 454 pyrosequencing
-
Spatz SJ, Rue CA. 2008. Sequence determination of a mildly virulent strain (CU-2) of Gallid herpesvirus type 2 using 454 pyrosequencing. Virus Genes 36:479-489.
-
(2008)
Virus Genes
, vol.36
, pp. 479-489
-
-
Spatz, S.J.1
Rue, C.A.2
-
34
-
-
18644368714
-
The Bioperl toolkit: Perl modules for the life sciences
-
Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, et al. 2002. The Bioperl toolkit: Perl modules for the life sciences. Genome Res. 12:1611-1618.
-
(2002)
Genome Res.
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
Brenner, S.E.4
Chervitz, S.A.5
-
36
-
-
33144457497
-
Detection of the new human coronavirus HKU1: A report of 6 cases
-
Vabret A, Dina J, Gouarin S, Petitjean J, Corbet S, Freymuth F. 2006. Detection of the new human coronavirus HKU1: A report of 6 cases. Clin. Infect. Dis. 42:634-639.
-
(2006)
Clin. Infect. Dis.
, vol.42
, pp. 634-639
-
-
Vabret, A.1
Dina, J.2
Gouarin, S.3
Petitjean, J.4
Corbet, S.5
Freymuth, F.6
-
37
-
-
41149167170
-
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
-
Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, et al. 2008. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Mol. Ecol. 17:1636-1647.
-
(2008)
Mol. Ecol.
, vol.17
, pp. 1636-1647
-
-
Vera, J.C.1
Wheat, C.W.2
Fescemyer, H.W.3
Frilander, M.J.4
Crawford, D.L.5
-
38
-
-
49749107864
-
Ligation-mediated amplification for effective rapid determination of viral RNA sequences (RDV)
-
Watanabe S, Mizutani T, Sakai K, Kato K, Tohya Y, et al. 2008. Ligation-mediated amplification for effective rapid determination of viral RNA sequences (RDV). J. Clin. Virol. 43:56-59.
-
(2008)
J. Clin. Virol.
, vol.43
, pp. 56-59
-
-
Watanabe, S.1
Mizutani, T.2
Sakai, K.3
Kato, K.4
Tohya, Y.5
-
39
-
-
33750688196
-
454 sequencing put to the test using the complex genome of barley
-
Wicker T, Schlagenhauf E, Graner A, Close TJ, Keller B, Stein N. 2006. 454 sequencing put to the test using the complex genome of barley. BMC Genomics 7:275.
-
(2006)
BMC Genomics
, vol.7
, pp. 275
-
-
Wicker, T.1
Schlagenhauf, E.2
Graner, A.3
Close, T.J.4
Keller, B.5
Stein, N.6
-
40
-
-
19944427959
-
Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia
-
Woo PC, Lau SK, Chu CM, Chan KH, Tsoi HW, et al. 2005. Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia. J. Virol. 79:884-895.
-
(2005)
J. Virol.
, vol.79
, pp. 884-895
-
-
Woo, P.C.1
Lau, S.K.2
Chu, C.M.3
Chan, K.H.4
Tsoi, H.W.5
-
41
-
-
0033749806
-
The human endogenous retrovirus K Rev response element coincides with a predicted RNA folding region
-
Yang J, Bogerd H, Le SY, Cullen BR. 2000. The human endogenous retrovirus K Rev response element coincides with a predicted RNA folding region. RNA 6:1551-1564.
-
(2000)
RNA
, vol.6
, pp. 1551-1564
-
-
Yang, J.1
Bogerd, H.2
Le, S.Y.3
Cullen, B.R.4
-
42
-
-
31144459030
-
RNA viral community in human feces: Prevalence of plant pathogenic viruses
-
Zhang T, Breitbart M, Lee WH, Run JQ, Wei CL, et al. 2006. RNA viral community in human feces: Prevalence of plant pathogenic viruses. PLoS Biol. 4:e3.
-
(2006)
PLoS Biol.
, vol.4
-
-
Zhang, T.1
Breitbart, M.2
Lee, W.H.3
Run, J.Q.4
Wei, C.L.5
|