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Volumn 13, Issue , 2013, Pages

Expressional alterations in functional ultra-conserved non-coding rnas in response to all-trans retinoic acid - induced differentiation in neuroblastoma cells

Author keywords

ATRA; Differentiation; neuroblastoma; Transcribed ultra conserved regions

Indexed keywords

COMPLEMENTARY RNA; RETINOIC ACID; SMALL INTERFERING RNA; UNTRANSLATED RNA;

EID: 84875863125     PISSN: None     EISSN: 14712407     Source Type: Journal    
DOI: 10.1186/1471-2407-13-184     Document Type: Article
Times cited : (35)

References (42)
  • 1
    • 0037366067 scopus 로고    scopus 로고
    • Neuroblastoma: biological insights into a clinical enigma
    • 10.1038/nrc1014, 12612655
    • Brodeur GM. Neuroblastoma: biological insights into a clinical enigma. Nat Rev Cancer 2003, 3(3):203-216. 10.1038/nrc1014, 12612655.
    • (2003) Nat Rev Cancer , vol.3 , Issue.3 , pp. 203-216
    • Brodeur, G.M.1
  • 2
    • 33750475218 scopus 로고    scopus 로고
    • Human fetal neuroblast and neuroblastoma transcriptome analysis confirms neuroblast origin and highlights neuroblastoma candidate genes
    • 10.1186/gb-2006-7-9-r84, 1794547, 16989664
    • De Preter K. Human fetal neuroblast and neuroblastoma transcriptome analysis confirms neuroblast origin and highlights neuroblastoma candidate genes. Genome Biol 2006, 7(9):R84. 10.1186/gb-2006-7-9-r84, 1794547, 16989664.
    • (2006) Genome Biol , vol.7 , Issue.9
    • De Preter, K.1
  • 3
    • 4544236943 scopus 로고    scopus 로고
    • Oligonucleotide microarray analysis of gene expression in neuroblastoma displaying loss of chromosome 11q
    • 10.1093/carcin/bgh173, 15090470
    • McArdle L. Oligonucleotide microarray analysis of gene expression in neuroblastoma displaying loss of chromosome 11q. Carcinogenesis 2004, 25(9):1599-1609. 10.1093/carcin/bgh173, 15090470.
    • (2004) Carcinogenesis , vol.25 , Issue.9 , pp. 1599-1609
    • McArdle, L.1
  • 4
    • 33745700217 scopus 로고    scopus 로고
    • Integrative genomics identifies distinct molecular classes of neuroblastoma and shows that multiple genes are targeted by regional alterations in DNA copy number
    • 10.1158/0008-5472.CAN-05-4618, 16778177
    • Wang Q. Integrative genomics identifies distinct molecular classes of neuroblastoma and shows that multiple genes are targeted by regional alterations in DNA copy number. Cancer Res 2006, 66(12):6050-6062. 10.1158/0008-5472.CAN-05-4618, 16778177.
    • (2006) Cancer Res , vol.66 , Issue.12 , pp. 6050-6062
    • Wang, Q.1
  • 5
    • 33750963337 scopus 로고    scopus 로고
    • Customized oligonucleotide microarray gene expression-based classification of neuroblastoma patients outperforms current clinical risk stratification
    • 10.1200/JCO.2006.06.1879, 17075126
    • Oberthuer A. Customized oligonucleotide microarray gene expression-based classification of neuroblastoma patients outperforms current clinical risk stratification. J Clin Oncol 2006, 24(31):5070-5078. 10.1200/JCO.2006.06.1879, 17075126.
    • (2006) J Clin Oncol , vol.24 , Issue.31 , pp. 5070-5078
    • Oberthuer, A.1
  • 6
    • 67649372693 scopus 로고    scopus 로고
    • Predicting outcomes for children with neuroblastoma using a multigene-expression signature: a retrospective SIOPEN/COG/GPOH study
    • 10.1016/S1470-2045(09)70154-8, 3045079, 19515614
    • Vermeulen J. Predicting outcomes for children with neuroblastoma using a multigene-expression signature: a retrospective SIOPEN/COG/GPOH study. Lancet Oncol 2009, 10(7):663-671. 10.1016/S1470-2045(09)70154-8, 3045079, 19515614.
    • (2009) Lancet Oncol , vol.10 , Issue.7 , pp. 663-671
    • Vermeulen, J.1
  • 7
    • 70649115573 scopus 로고    scopus 로고
    • Widespread dysregulation of MiRNAs by MYCN amplification and chromosomal imbalances in neuroblastoma: association of miRNA expression with survival
    • 10.1371/journal.pone.0007850, 2773120, 19924232
    • Bray I. Widespread dysregulation of MiRNAs by MYCN amplification and chromosomal imbalances in neuroblastoma: association of miRNA expression with survival. PLoS One 2009, 4(11):e7850. 10.1371/journal.pone.0007850, 2773120, 19924232.
    • (2009) PLoS One , vol.4 , Issue.11
    • Bray, I.1
  • 8
    • 77953114650 scopus 로고    scopus 로고
    • Chromosomal and microRNA expression patterns reveal biologically distinct subgroups of 11q- neuroblastoma
    • 10.1158/1078-0432.CCR-09-3215, 2880207, 20406844
    • Buckley PG. Chromosomal and microRNA expression patterns reveal biologically distinct subgroups of 11q- neuroblastoma. Clin Cancer Res 2010, 16(11):2971-2978. 10.1158/1078-0432.CCR-09-3215, 2880207, 20406844.
    • (2010) Clin Cancer Res , vol.16 , Issue.11 , pp. 2971-2978
    • Buckley, P.G.1
  • 9
    • 33847009923 scopus 로고    scopus 로고
    • Differential patterns of microRNA expression in neuroblastoma are correlated with prognosis, differentiation, and apoptosis
    • 10.1158/0008-5472.CAN-06-3667, 17283129
    • Chen Y, Stallings RL. Differential patterns of microRNA expression in neuroblastoma are correlated with prognosis, differentiation, and apoptosis. Cancer Res 2007, 67(3):976-983. 10.1158/0008-5472.CAN-06-3667, 17283129.
    • (2007) Cancer Res , vol.67 , Issue.3 , pp. 976-983
    • Chen, Y.1    Stallings, R.L.2
  • 10
    • 77949267058 scopus 로고    scopus 로고
    • MYCN/c-MYC-induced microRNAs repress coding gene networks associated with poor outcome in MYCN/c-MYC-activated tumors
    • 10.1038/onc.2009.429, 19946337
    • Mestdagh P. MYCN/c-MYC-induced microRNAs repress coding gene networks associated with poor outcome in MYCN/c-MYC-activated tumors. Oncogene 2010, 29(9):1394-1404. 10.1038/onc.2009.429, 19946337.
    • (2010) Oncogene , vol.29 , Issue.9 , pp. 1394-1404
    • Mestdagh, P.1
  • 11
    • 77955439834 scopus 로고    scopus 로고
    • Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma
    • 10.1093/nar/gkq342, 2943620, 20466808
    • Schulte JH. Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma. Nucleic Acids Res 2010, 38(17):5919-5928. 10.1093/nar/gkq342, 2943620, 20466808.
    • (2010) Nucleic Acids Res , vol.38 , Issue.17 , pp. 5919-5928
    • Schulte, J.H.1
  • 12
    • 2542542256 scopus 로고    scopus 로고
    • Ultraconserved elements in the human genome
    • 10.1126/science.1098119, 15131266
    • Bejerano G. Ultraconserved elements in the human genome. Science 2004, 304(5675):1321-1325. 10.1126/science.1098119, 15131266.
    • (2004) Science , vol.304 , Issue.5675 , pp. 1321-1325
    • Bejerano, G.1
  • 13
    • 34548230885 scopus 로고    scopus 로고
    • Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas
    • 10.1016/j.ccr.2007.07.027, 17785203
    • Calin GA. Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas. Cancer Cell 2007, 12(3):215-229. 10.1016/j.ccr.2007.07.027, 17785203.
    • (2007) Cancer Cell , vol.12 , Issue.3 , pp. 215-229
    • Calin, G.A.1
  • 14
    • 77953808788 scopus 로고    scopus 로고
    • An integrative genomics screen uncovers ncRNA T-UCR functions in neuroblastoma tumours
    • 10.1038/onc.2010.106, 20383195
    • Mestdagh P. An integrative genomics screen uncovers ncRNA T-UCR functions in neuroblastoma tumours. Oncogene 2010, 29(24):3583-3592. 10.1038/onc.2010.106, 20383195.
    • (2010) Oncogene , vol.29 , Issue.24 , pp. 3583-3592
    • Mestdagh, P.1
  • 15
    • 74249097855 scopus 로고    scopus 로고
    • Transcribed-Ultra Conserved Region expression is associated with outcome in high-risk neuroblastoma
    • 10.1186/1471-2407-9-441, 2804711, 20003513
    • Scaruffi P. Transcribed-Ultra Conserved Region expression is associated with outcome in high-risk neuroblastoma. BMC Cancer 2009, 9:441. 10.1186/1471-2407-9-441, 2804711, 20003513.
    • (2009) BMC Cancer , vol.9 , pp. 441
    • Scaruffi, P.1
  • 16
    • 0021176611 scopus 로고
    • Retinoic acid-induced differentiation of cultured human neuroblastoma cells: a comparison with phorbolester-induced differentiation
    • 10.1016/0045-6039(84)90038-1, 6467378
    • Pahlman S. Retinoic acid-induced differentiation of cultured human neuroblastoma cells: a comparison with phorbolester-induced differentiation. Cell Differ 1984, 14(2):135-144. 10.1016/0045-6039(84)90038-1, 6467378.
    • (1984) Cell Differ , vol.14 , Issue.2 , pp. 135-144
    • Pahlman, S.1
  • 17
    • 66149171647 scopus 로고    scopus 로고
    • New therapeutic targets for the treatment of high-risk neuroblastoma
    • 10.1002/jcb.22094, 19277986
    • Wagner LM, Danks MK. New therapeutic targets for the treatment of high-risk neuroblastoma. J Cell Biochem 2009, 107(1):46-57. 10.1002/jcb.22094, 19277986.
    • (2009) J Cell Biochem , vol.107 , Issue.1 , pp. 46-57
    • Wagner, L.M.1    Danks, M.K.2
  • 18
    • 0021947043 scopus 로고
    • Decreased expression of N-myc precedes retinoic acid-induced morphological differentiation of human neuroblastoma
    • 10.1038/313404a0, 3855502
    • Thiele CJ, Reynolds CP, Israel MA. Decreased expression of N-myc precedes retinoic acid-induced morphological differentiation of human neuroblastoma. Nature 1985, 313(6001):404-406. 10.1038/313404a0, 3855502.
    • (1985) Nature , vol.313 , Issue.6001 , pp. 404-406
    • Thiele, C.J.1    Reynolds, C.P.2    Israel, M.A.3
  • 19
    • 78049265812 scopus 로고    scopus 로고
    • MicroRNA mediates DNA demethylation events triggered by retinoic acid during neuroblastoma cell differentiation
    • 10.1158/0008-5472.CAN-10-1534, 2955783, 20841484
    • Das S. MicroRNA mediates DNA demethylation events triggered by retinoic acid during neuroblastoma cell differentiation. Cancer Res 2010, 70(20):7874-7881. 10.1158/0008-5472.CAN-10-1534, 2955783, 20841484.
    • (2010) Cancer Res , vol.70 , Issue.20 , pp. 7874-7881
    • Das, S.1
  • 20
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • 10.1093/bioinformatics/19.2.185, 12538238
    • Bolstad BM. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19(2):185-193. 10.1093/bioinformatics/19.2.185, 12538238.
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 185-193
    • Bolstad, B.M.1
  • 21
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • 10.1093/biostatistics/4.2.249, 12925520
    • Irizarry RA. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003, 4(2):249-264. 10.1093/biostatistics/4.2.249, 12925520.
    • (2003) Biostatistics , vol.4 , Issue.2 , pp. 249-264
    • Irizarry, R.A.1
  • 22
    • 22144497814 scopus 로고    scopus 로고
    • Up-regulated hoxC4 induces CD14 expression during the differentiation of acute promyelocytic leukemia cells
    • 10.1080/10428190500102589, 16019559
    • Kim DY. Up-regulated hoxC4 induces CD14 expression during the differentiation of acute promyelocytic leukemia cells. Leuk Lymphoma 2005, 46(7):1061-1066. 10.1080/10428190500102589, 16019559.
    • (2005) Leuk Lymphoma , vol.46 , Issue.7 , pp. 1061-1066
    • Kim, D.Y.1
  • 23
    • 2942574509 scopus 로고    scopus 로고
    • Transcriptional interference between convergent promoters caused by elongation over the promoter
    • 10.1016/j.molcel.2004.05.010, 15175159
    • Callen BP. Transcriptional interference between convergent promoters caused by elongation over the promoter. Mol Cell 2004, 14(5):647-656. 10.1016/j.molcel.2004.05.010, 15175159.
    • (2004) Mol Cell , vol.14 , Issue.5 , pp. 647-656
    • Callen, B.P.1
  • 24
    • 65949090757 scopus 로고    scopus 로고
    • The cell fate determination factor dachshund inhibits androgen receptor signaling and prostate cancer cellular growth
    • 10.1158/0008-5472.CAN-08-3821, 2669850, 19351840
    • Wu K. The cell fate determination factor dachshund inhibits androgen receptor signaling and prostate cancer cellular growth. Cancer Res 2009, 69(8):3347-3355. 10.1158/0008-5472.CAN-08-3821, 2669850, 19351840.
    • (2009) Cancer Res , vol.69 , Issue.8 , pp. 3347-3355
    • Wu, K.1
  • 25
    • 70349134347 scopus 로고    scopus 로고
    • Altered expression of DACH1 and cyclin D1 in endometrial cancer
    • 10.4161/cbt.8.16.8963, 19502783
    • Nan F. Altered expression of DACH1 and cyclin D1 in endometrial cancer. Cancer Biol Ther 2009, 8(16):1534-1539. 10.4161/cbt.8.16.8963, 19502783.
    • (2009) Cancer Biol Ther , vol.8 , Issue.16 , pp. 1534-1539
    • Nan, F.1
  • 27
    • 84857207605 scopus 로고    scopus 로고
    • The metallophosphodiesterase Mpped2 impairs tumorigenesis in neuroblastoma
    • 10.4161/cc.11.3.19063, 22262177
    • Liguori L. The metallophosphodiesterase Mpped2 impairs tumorigenesis in neuroblastoma. Cell Cycle 2012, 11(3):569-81. 10.4161/cc.11.3.19063, 22262177.
    • (2012) Cell Cycle , vol.11 , Issue.3 , pp. 569-581
    • Liguori, L.1
  • 28
    • 79551674253 scopus 로고    scopus 로고
    • Expression and functional role of a transcribed noncoding RNA with an ultraconserved element in hepatocellular carcinoma
    • 10.1073/pnas.1011098108, 3021052, 21187392
    • Braconi C. Expression and functional role of a transcribed noncoding RNA with an ultraconserved element in hepatocellular carcinoma. Proc Natl Acad Sci USA 2011, 108(2):786-91. 10.1073/pnas.1011098108, 3021052, 21187392.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.2 , pp. 786-791
    • Braconi, C.1
  • 29
    • 84856805631 scopus 로고    scopus 로고
    • Expression levels of transcribed ultraconserved regions uc.73 and uc.388 are altered in colorectal cancer
    • 10.1159/000336479, 22328099
    • Sana J. Expression levels of transcribed ultraconserved regions uc.73 and uc.388 are altered in colorectal cancer. Oncology 2012, 82(2):114-8. 10.1159/000336479, 22328099.
    • (2012) Oncology , vol.82 , Issue.2 , pp. 114-118
    • Sana, J.1
  • 30
    • 0026734111 scopus 로고
    • Pax in development
    • 10.1016/0092-8674(92)90281-G, 1591773
    • Gruss P, Walther C. Pax in development. Cell 1992, 69(5):719-22. 10.1016/0092-8674(92)90281-G, 1591773.
    • (1992) Cell , vol.69 , Issue.5 , pp. 719-722
    • Gruss, P.1    Walther, C.2
  • 31
    • 0029082823 scopus 로고
    • Expression of Pax-2 in human renal cell carcinoma and growth inhibition by anti-sense oligonucleotides
    • Gnarra JR, Dressler GR. Expression of Pax-2 in human renal cell carcinoma and growth inhibition by anti-sense oligonucleotides. Cancer Res 1995, 55(18):4092-8.
    • (1995) Cancer Res , vol.55 , Issue.18 , pp. 4092-4098
    • Gnarra, J.R.1    Dressler, G.R.2
  • 32
    • 33846420626 scopus 로고    scopus 로고
    • Noncoding RNA synthesis and loss of Polycomb group repression accompanies the colinear activation of the human HOXA cluster
    • 1781374, 17185360
    • Sessa L. Noncoding RNA synthesis and loss of Polycomb group repression accompanies the colinear activation of the human HOXA cluster. RNA 2007, 13(2):223-39. 1781374, 17185360.
    • (2007) RNA , vol.13 , Issue.2 , pp. 223-239
    • Sessa, L.1
  • 33
    • 34250729138 scopus 로고    scopus 로고
    • Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
    • 10.1016/j.cell.2007.05.022, 2084369, 17604720
    • Rinn JL. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007, 129(7):1311-23. 10.1016/j.cell.2007.05.022, 2084369, 17604720.
    • (2007) Cell , vol.129 , Issue.7 , pp. 1311-1323
    • Rinn, J.L.1
  • 34
    • 64549129108 scopus 로고    scopus 로고
    • Reduced proliferation of CD34(+) cells from patients with acute myeloid leukemia after gene transfer of INPP5D
    • 10.1038/gt.2008.184, 19148132
    • Metzner A. Reduced proliferation of CD34(+) cells from patients with acute myeloid leukemia after gene transfer of INPP5D. Gene Ther 2009, 16(4):570-3. 10.1038/gt.2008.184, 19148132.
    • (2009) Gene Ther , vol.16 , Issue.4 , pp. 570-573
    • Metzner, A.1
  • 35
    • 84862832734 scopus 로고    scopus 로고
    • Quantitative assessment of gene methylation and their impact on clinical outcome in gastric cancer
    • Yao D. Quantitative assessment of gene methylation and their impact on clinical outcome in gastric cancer. Clin Chim Acta 2012, 413(7-8):787-94.
    • (2012) Clin Chim Acta , vol.413 , Issue.7-8 , pp. 787-794
    • Yao, D.1
  • 36
    • 79955968990 scopus 로고    scopus 로고
    • Aberrant DNA methylation characterizes juvenile myelomonocytic leukemia with poor outcome
    • 10.1182/blood-2010-08-298968, 21406719
    • Olk-Batz C. Aberrant DNA methylation characterizes juvenile myelomonocytic leukemia with poor outcome. Blood 2011, 117(18):4871-80. 10.1182/blood-2010-08-298968, 21406719.
    • (2011) Blood , vol.117 , Issue.18 , pp. 4871-4880
    • Olk-Batz, C.1
  • 37
    • 79751526520 scopus 로고    scopus 로고
    • Identification of epigenetically regulated genes that predict patient outcome in neuroblastoma
    • 10.1186/1471-2407-11-66, 3045360, 21314941
    • Caren H. Identification of epigenetically regulated genes that predict patient outcome in neuroblastoma. BMC Cancer 2011, 11:66. 10.1186/1471-2407-11-66, 3045360, 21314941.
    • (2011) BMC Cancer , vol.11 , pp. 66
    • Caren, H.1
  • 38
    • 84857167951 scopus 로고    scopus 로고
    • Methylation profiling in non-small cell lung cancer: clinical implications
    • Moran A. Methylation profiling in non-small cell lung cancer: clinical implications. Int J Oncol 2012, 40(3):739-46.
    • (2012) Int J Oncol , vol.40 , Issue.3 , pp. 739-746
    • Moran, A.1
  • 39
    • 84859736577 scopus 로고    scopus 로고
    • Silencing of Kruppel-like factor 2 by the histone methyltransferase EZH2 in human cancer
    • 10.1038/onc.2011.387, 3325596, 21892211
    • Taniguchi H. Silencing of Kruppel-like factor 2 by the histone methyltransferase EZH2 in human cancer. Oncogene 2012, 31(15):1988-94. 10.1038/onc.2011.387, 3325596, 21892211.
    • (2012) Oncogene , vol.31 , Issue.15 , pp. 1988-1994
    • Taniguchi, H.1
  • 40
    • 0034929708 scopus 로고    scopus 로고
    • Sp1 and kruppel-like factor family of transcription factors in cell growth regulation and cancer
    • 10.1002/jcp.1111, 11424081
    • Black AR, Black JD, Azizkhan-Clifford J. Sp1 and kruppel-like factor family of transcription factors in cell growth regulation and cancer. J Cell Physiol 2001, 188(2):143-60. 10.1002/jcp.1111, 11424081.
    • (2001) J Cell Physiol , vol.188 , Issue.2 , pp. 143-160
    • Black, A.R.1    Black, J.D.2    Azizkhan-Clifford, J.3
  • 41
    • 79958760618 scopus 로고    scopus 로고
    • Deregulated expression of Kruppel-like factors in acute myeloid leukemia
    • 10.1016/j.leukres.2011.03.010, 21470678
    • Humbert M. Deregulated expression of Kruppel-like factors in acute myeloid leukemia. Leuk Res 2011, 35(7):909-13. 10.1016/j.leukres.2011.03.010, 21470678.
    • (2011) Leuk Res , vol.35 , Issue.7 , pp. 909-913
    • Humbert, M.1
  • 42
    • 77951118936 scopus 로고    scopus 로고
    • Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
    • 10.1038/nature08975, 3049919, 20393566
    • Gupta RA. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010, 464(7291):1071-6. 10.1038/nature08975, 3049919, 20393566.
    • (2010) Nature , vol.464 , Issue.7291 , pp. 1071-1076
    • Gupta, R.A.1


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