-
1
-
-
1542329149
-
Predicting biomarkers for ovarian cancer using gene-expression microarrays
-
Adib, T. R., Henderson, S., Perrett, C., Hewitt, D., Bourmpoulia, D., Ledermann, J., et al. (2004). Predicting biomarkers for ovarian cancer using gene-expression microarrays. Br. J. Cancer 90, 686-692.
-
(2004)
Br. J. Cancer
, vol.90
, pp. 686-692
-
-
Adib, T.R.1
Henderson, S.2
Perrett, C.3
Hewitt, D.4
Bourmpoulia, D.5
Ledermann, J.6
-
2
-
-
48749127648
-
Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation
-
Allen, A. E., LaRoche, J., Maheswari, U., Lommer, M., Schauer, N., Lopez, P. J., et al. (2008). Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. Proc. Natl. Acad. Sci. U.S.A. 105, 10438-10443.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 10438-10443
-
-
Allen, A.E.1
LaRoche, J.2
Maheswari, U.3
Lommer, M.4
Schauer, N.5
Lopez, P.J.6
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
-
4
-
-
27144468030
-
Reliable gene expression measurements from degraded RNA by quantitative real-time PCR depend on short amplicons and a proper normalization
-
Antonov, J., Goldstein, D. R., Oberli, A., Baltzer, A., Pirotta, M., Fleischmann, A., et al. (2005). Reliable gene expression measurements from degraded RNA by quantitative real-time PCR depend on short amplicons and a proper normalization. Lab. Invest. 85, 1040-1050.
-
(2005)
Lab. Invest.
, vol.85
, pp. 1040-1050
-
-
Antonov, J.1
Goldstein, D.R.2
Oberli, A.3
Baltzer, A.4
Pirotta, M.5
Fleischmann, A.6
-
5
-
-
6044252163
-
The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism
-
Armbrust, E. V., Berges, J. A., Bowler, C., Green, B. R., Martinez, D., et al. (2004). The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 306, 79-86.
-
(2004)
Science
, vol.306
, pp. 79-86
-
-
Armbrust, E.V.1
Berges, J.A.2
Bowler, C.3
Green, B.R.4
Martinez, D.5
-
6
-
-
16544368582
-
The Arabidopsistrehalose-6-P synthase AtTPS1 gene is a regulator of glucose, abscisic acid, and stress signaling
-
Avonce, N., Leyman, B., Mascorro-Gallardo, J. O., Van Dijck, P., Thevelein, J. M., and Iturriaga, G. (2004). The Arabidopsistrehalose-6-P synthase AtTPS1 gene is a regulator of glucose, abscisic acid, and stress signaling. Plant Physiol. 136, 3649-3659.
-
(2004)
Plant Physiol
, vol.136
, pp. 3649-3659
-
-
Avonce, N.1
Leyman, B.2
Mascorro-Gallardo, J.O.3
Van Dijck, P.4
Thevelein, J.M.5
Iturriaga, G.6
-
7
-
-
84856230856
-
Coupled effects of light and nitrogen source on the urea cycle and nitrogen metabolism over a diel cycle in the marine diatom Thalassiosira pseudonana
-
Bender, S. J., Parker, M. S., and Armbrust, E. V. (2012). Coupled effects of light and nitrogen source on the urea cycle and nitrogen metabolism over a diel cycle in the marine diatom Thalassiosira pseudonana. Protist 163, 232-251.
-
(2012)
Protist
, vol.163
, pp. 232-251
-
-
Bender, S.J.1
Parker, M.S.2
Armbrust, E.V.3
-
8
-
-
53549108296
-
Understanding nitrogen limitation in Aureococcus anophag-efferens (Pelagophyceae) through cDNA and qRT-PCR analysis
-
Berg, G. M., Shrager, J., Glöckner, G., Arrigo, K. R., and Grossman, A. R. (2008). Understanding nitrogen limitation in Aureococcus anophag-efferens (Pelagophyceae) through cDNA and qRT-PCR analysis. J. Phycol. 44, 1235-1249.
-
(2008)
J. Phycol.
, vol.44
, pp. 1235-1249
-
-
Berg, G.M.1
Shrager, J.2
Glöckner, G.3
Arrigo, K.R.4
Grossman, A.R.5
-
9
-
-
77952477595
-
Emiliania huxleyi (prymnesiophyceae): nitrogen-metabolism genes and their expression in response to external nitrogen sources
-
Bruhn, A., LaRoche, J., and Richardson, K. (2010). Emiliania huxleyi (prymnesiophyceae): nitrogen-metabolism genes and their expression in response to external nitrogen sources. J. Phycol. 46, 266-277.
-
(2010)
J. Phycol.
, vol.46
, pp. 266-277
-
-
Bruhn, A.1
LaRoche, J.2
Richardson, K.3
-
10
-
-
27144522538
-
Ras activity in the Drosophila pro-thoracic gland regulates body size and developmental rate via ecdysone release
-
Caldwell, P. E., Walkiewicz, M., and Stern, M. (2005). Ras activity in the Drosophila pro-thoracic gland regulates body size and developmental rate via ecdysone release. Curr. Biol. 15, 1785-1795.
-
(2005)
Curr. Biol.
, vol.15
, pp. 1785-1795
-
-
Caldwell, P.E.1
Walkiewicz, M.2
Stern, M.3
-
11
-
-
79953092271
-
Proteomic analysis of the marine diatom Thalassiosira pseudonana upon exposure to benzo(a)pyrene
-
doi: 10.1186/1471-2164-12-159
-
Carvalho, R. N., and Lettieri, T. (2011). Proteomic analysis of the marine diatom Thalassiosira pseudonana upon exposure to benzo(a)pyrene. BMC Genomics 12:159. doi: 10.1186/1471-2164-12-159
-
(2011)
BMC Genomics
, vol.12
, pp. 159
-
-
Carvalho, R.N.1
Lettieri, T.2
-
12
-
-
0141995484
-
Selection of candidate housekeeping controls in tomato plants using EST data
-
Coker, J. S., and Davies, E. (2003). Selection of candidate housekeeping controls in tomato plants using EST data. Biotechniques 35, 740-742.
-
(2003)
Biotechniques
, vol.35
, pp. 740-742
-
-
Coker, J.S.1
Davies, E.2
-
13
-
-
32644481938
-
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
-
Czechowski, T., Stitt, M., Altmann, T., Udvardi, M. K., and Scheible, W.-R. (2005). Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139, 5-17.
-
(2005)
Plant Physiol
, vol.139
, pp. 5-17
-
-
Czechowski, T.1
Stitt, M.2
Altmann, T.3
Udvardi, M.K.4
Scheible, W.-R.5
-
14
-
-
40949144505
-
Characterization of a modular, cell-surface, protein and identification of a new gene family in the diatom Thalassiosira pseudonana
-
Davis, A. K., and Palenik, B. (2008). Characterization of a modular, cell-surface, protein and identification of a new gene family in the diatom Thalassiosira pseudonana. Protist 159, 195-207.
-
(2008)
Protist
, vol.159
, pp. 195-207
-
-
Davis, A.K.1
Palenik, B.2
-
15
-
-
33746267435
-
Gene expression induced by copper stress in diatom Thalassiosira pseudonana
-
Davis, A. K., Hildebrand, M., and Palenik, B. (2006). Gene expression induced by copper stress in diatom Thalassiosira pseudonana. Eukaryot. Cell 5, 1157-1168.
-
(2006)
Eukaryot. Cell
, vol.5
, pp. 1157-1168
-
-
Davis, A.K.1
Hildebrand, M.2
Palenik, B.3
-
16
-
-
41149171125
-
Evidence based selection of housekeeping genes
-
doi: 10.1371/journal.pone.0000898
-
de Jonge, H. J. M., Fehrmann, R. S. N., de Bont, E. S. J. M., Hofstra, R. M. W., Gerbens, F., Kamps, W. A., et al. (2007). Evidence based selection of housekeeping genes. PLoS ONE 2:e898. doi: 10.1371/journal.pone.0000898
-
(2007)
PLoS ONE
, vol.2
-
-
de Jonge, H.J.M.1
Fehrmann, R.S.N.2
de Bont, E.S.J.M.3
Hofstra, R.M.W.4
Gerbens, F.5
Kamps, W.A.6
-
17
-
-
28644449917
-
How does gene expression clustering work? Nat
-
D'haeseleer, P. (2005). How does gene expression clustering work? Nat. Biotechnol. 23, 1499-1501.
-
(2005)
Biotechnol
, vol.23
, pp. 1499-1501
-
-
D'haeseleer, P.1
-
18
-
-
27644563899
-
The implications of using an inappropriate reference gene for real-time reverse transcription PCR data normalization
-
Dheda, K., Huggett, J. F., Chang, J. S., Kim, L. U., Bustin, S. A., Johnson, M. A., et al. (2005). The implications of using an inappropriate reference gene for real-time reverse transcription PCR data normalization. Anal Biochem. 344, 141-143.
-
(2005)
Anal Biochem
, vol.344
, pp. 141-143
-
-
Dheda, K.1
Huggett, J.F.2
Chang, J.S.3
Kim, L.U.4
Bustin, S.A.5
Johnson, M.A.6
-
19
-
-
84859033232
-
The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response
-
doi: 10.1371/journal.pone.0033768
-
Dyhrman, S. T., Jenkins, B. D., Rynearson, T. A., Saito, M. A., Mercier, M. L., Alexander, H., et al. (2012). The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response. PLoS ONE 7:e33768. doi: 10.1371/journal.pone.0033768
-
(2012)
PLoS ONE
, vol.7
-
-
Dyhrman, S.T.1
Jenkins, B.D.2
Rynearson, T.A.3
Saito, M.A.4
Mercier, M.L.5
Alexander, H.6
-
20
-
-
0036081355
-
Gene expression omnibus: NCBI gene expression and hybridization array data repository
-
Edgar, R. (2002). Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30, 207-210.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
-
21
-
-
44049098020
-
Drosophila germ-line modulation of insulin signaling and lifespan
-
Flatt, T., Min, K.-J., D'Alterio, C., Villa-Cuesta, E., Cumbers, J., Lehmann, R., et al. (2008). Drosophila germ-line modulation of insulin signaling and lifespan. Proc. Natl. Acad. Sci. U.S.A. 105, 6368-6373.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 6368-6373
-
-
Flatt, T.1
Min, K.-J.2
D'Alterio, C.3
Villa-Cuesta, E.4
Cumbers, J.5
Lehmann, R.6
-
22
-
-
0033783651
-
The current excitement in bioinformatics-analysis of whole-genome expression data: how does it relate to protein structure and function? Curr
-
Gerstein, M., and Jansen, R. (2000). The current excitement in bioinformatics-analysis of whole-genome expression data: how does it relate to protein structure and function? Curr. Opin. Struc. Biol. 10, 574-584.
-
(2000)
Opin. Struc. Biol.
, vol.10
, pp. 574-584
-
-
Gerstein, M.1
Jansen, R.2
-
23
-
-
0036798238
-
Judging the quality of gene expression-based clustering methods using gene annotation
-
Gibbons, E D., and Roth, E P. (2002). Judging the quality of gene expression-based clustering methods using gene annotation. Genome Res. 12, 1574-1581.
-
(2002)
Genome Res
, vol.12
, pp. 1574-1581
-
-
Gibbons, E.D.1
Roth, E.P.2
-
24
-
-
0001914227
-
-
in Culture of Marine Invertebrate Animals, eds W. L. Smith and M. H. Chaney (New York, NY: Plenum Press)
-
Guillard, R. R. L. (1975). "Culture of phyto plankton for feeding marine invertebrates," in Culture of Marine Invertebrate Animals, eds W. L. Smith and M. H. Chaney (New York, NY: Plenum Press), 26-60.
-
(1975)
Culture of phyto plankton for feeding marine invertebrates
, pp. 26-60
-
-
Guillard, R.R.L.1
-
25
-
-
84861736140
-
Evaluation and validation of internal control genes for studying gene expression in the dinoflagellate Prorocentrum minimum using real-time PCR
-
Guo, R., and Ki, J.-S. (2011). Evaluation and validation of internal control genes for studying gene expression in the dinoflagellate Prorocentrum minimum using real-time PCR. Eur. J. Protistol. 48, 199-206.
-
(2011)
Eur. J. Protistol.
, vol.48
, pp. 199-206
-
-
Guo, R.1
Ki, J.-S.2
-
26
-
-
0001138328
-
Algorithm AS 136 A k-means clustering algorithm
-
Hartigan, J. A., and Wong, M. A. (1979). Algorithm AS 136, A k-means clustering algorithm. J. Roy. Stat. Soc. C-App. 28, 100-108.
-
(1979)
J. Roy. Stat. Soc. C-App.
, vol.28
, pp. 100-108
-
-
Hartigan, J.A.1
Wong, M.A.2
-
27
-
-
34547572323
-
Sequence analysis and transcriptional regulation of iron acquisition genes in two marine diatoms
-
Kustka, A. B., Allen, A. E., and Morel, F. M. M. (2007). Sequence analysis and transcriptional regulation of iron acquisition genes in two marine diatoms. J. Phycol. 43, 715-729.
-
(2007)
J. Phycol.
, vol.43
, pp. 715-729
-
-
Kustka, A.B.1
Allen, A.E.2
Morel, F.M.M.3
-
28
-
-
84873414476
-
Quantitative PCR pitfalls: the case of the human placenta
-
Lanoix, D., Lacasse, A.-A., St-Pierre, J., Taylor, S. C., Ethier-Chiasson, M., Lafond, J., et al. (2012). Quantitative PCR pitfalls: the case of the human placenta. Mol Biotechnol. 52, 234-243.
-
(2012)
Mol Biotechnol
, vol.52
, pp. 234-243
-
-
Lanoix, D.1
Lacasse, A.-A.2
St-Pierre, J.3
Taylor, S.C.4
Ethier-Chiasson, M.5
Lafond, J.6
-
29
-
-
70449395751
-
Identification of two plastid proteins in the dinoflagellate Alexandrium affine that are substantially down-regulated by nitrogen-depletion
-
Lee, E W.-F., Morse, D., and Lo, S. C.-L. (2009). Identification of two plastid proteins in the dinoflagellate Alexandrium affine that are substantially down-regulated by nitrogen-depletion. J. Proteome Res. 8,5080-5092.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 5080-5092
-
-
Lee, E.-F.1
Morse, D.2
Lo, S.-L.3
-
30
-
-
80055055153
-
Recent progress in Symbiodinium transcriptomics
-
Leggat, W., Yellowlees, D., and Medina, M. (2011). Recent progress in Symbiodinium transcriptomics. J. Exp. Mar. Biol. Ecol. 408, 120-125.
-
(2011)
J. Exp. Mar. Biol. Ecol.
, vol.408
, pp. 120-125
-
-
Leggat, W.1
Yellowlees, D.2
Medina, M.3
-
31
-
-
60349117425
-
Two flavodoxin genes in Trichodesmium (Oscillato-riales Cyanophyceae): remarkable sequence divergence and possible functional diversification
-
Lin, S., Sandh, G., Zhang, H., Cheng, J., Perkins, K., Carpenter, E. J., et al. (2009). Two flavodoxin genes in Trichodesmium (Oscillato-riales, Cyanophyceae): remarkable sequence divergence and possible functional diversification. J. Exp. Mar. Biol. Ecol. 371, 93-101.
-
(2009)
J. Exp. Mar. Biol. Ecol.
, vol.371
, pp. 93-101
-
-
Lin, S.1
Sandh, G.2
Zhang, H.3
Cheng, J.4
Perkins, K.5
Carpenter, E.J.6
-
32
-
-
0035710746
-
Analysis of relative gene expression using real-time quantitative PCR and the 2-AACT method
-
Livak, K. J., and Schmittgen, T. D. (2001). Analysis of relative gene expression using real-time quantitative PCR and the 2-AACT method. Methods 25, 402-408.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
33
-
-
33746876704
-
Copper-dependent iron transport in coastal and oceanic diatoms
-
Maldonado, M. T., Allen, A. E., Chong, J. S., Lin, K., Leus, D., Karpenko, N., et al. (2006). Copper-dependent iron transport in coastal and oceanic diatoms. Limnol Oceanogr. 51, 1729-1743.
-
(2006)
Limnol Oceanogr
, vol.51
, pp. 1729-1743
-
-
Maldonado, M.T.1
Allen, A.E.2
Chong, J.S.3
Lin, K.4
Leus, D.5
Karpenko, N.6
-
34
-
-
13444304421
-
Specific pattern of ionic channel gene expression associated with pacemaker activity in the mouse heart
-
Marionneau, C., Couette, B., Liu, J., Li, H., Mangoni, M. E., Nargeot, J., et al. (2005). Specific pattern of ionic channel gene expression associated with pacemaker activity in the mouse heart. J. Physiol. 562, 223-234.
-
(2005)
J. Physiol.
, vol.562
, pp. 223-234
-
-
Marionneau, C.1
Couette, B.2
Liu, J.3
Li, H.4
Mangoni, M.E.5
Nargeot, J.6
-
35
-
-
77957242466
-
The mixed lineage nature of nitrogen transport and assimilation in marine eukary-otic phytoplankton: a case study of Micromonas
-
McDonald, S. M., Plant, J. N., and Worden, A. Z. (2010). The mixed lineage nature of nitrogen transport and assimilation in marine eukary-otic phytoplankton: a case study of Micromonas. Mol. Biol. Evol. 27, 2268-2283.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 2268-2283
-
-
McDonald, S.M.1
Plant, J.N.2
Worden, A.Z.3
-
36
-
-
40749126104
-
Expression and inhibition of the carboxylating and decarboxylating enzymes in photosynthetic C4 pathway of marine diatoms
-
McGinn, P. J., and Morel, F. M. M. (2008a). Expression and inhibition of the carboxylating and decarboxylating enzymes in photosynthetic C4 pathway of marine diatoms. Plant Physiol. 146, 300-309.
-
(2008)
Plant Physiol
, vol.146
, pp. 300-309
-
-
McGinn, P.J.1
Morel, F.M.M.2
-
37
-
-
42049091084
-
Expression and regulation of carbonic anhydrases in the marine diatom Thalassiosira pseudonana and in natural phytoplankton assemblages from Great Bay
-
McGinn, P. J., and Morel, F. M. M. (2008b). Expression and regulation of carbonic anhydrases in the marine diatom Thalassiosira pseudonana and in natural phytoplankton assemblages from Great Bay, New Jersey. Physiol Plant. 133, 78-91.
-
(2008)
New Jersey. Physiol Plant.
, vol.133
, pp. 78-91
-
-
McGinn, P.J.1
Morel, F.M.M.2
-
38
-
-
40349116065
-
Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses
-
Mock, T., Samanta, M. P., Iverson, V., Berthiaume, C., Robison, M., Holtermann, K., et al. (2008). Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses. Proc. Natl. Acad. Sci. U.S.A. 105, 1579-1584.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 1579-1584
-
-
Mock, T.1
Samanta, M.P.2
Iverson, V.3
Berthiaume, C.4
Robison, M.5
Holtermann, K.6
-
39
-
-
15944385225
-
Upper ocean ecosystem dynamics and iron cycling in a global three-dimensional model
-
Moore, J. K., Doney, S. C., and Lindsay, K. (2004). Upper ocean ecosystem dynamics and iron cycling in a global three-dimensional model. Glob. Biogeochem. Cycles 18, 1-21.
-
(2004)
Glob. Biogeochem. Cycles
, vol.18
, pp. 1-21
-
-
Moore, J.K.1
Doney, S.C.2
Lindsay, K.3
-
40
-
-
30944450584
-
Genome-based approaches to understanding phosphorus deprivation responses and PSR1 control in Chlamydomonas reinhardtii
-
Moseley, J. L., Chang, C.-W., and Grossman, A. R. (2006). Genome-based approaches to understanding phosphorus deprivation responses and PSR1 control in Chlamydomonas reinhardtii. Eukaryot. Cell 5, 26-44.
-
(2006)
Eukaryot. Cell
, vol.5
, pp. 26-44
-
-
Moseley, J.L.1
Chang, C.-W.2
Grossman, A.R.3
-
41
-
-
77950397835
-
Transcriptome profiling of a toxic dinoflagellate reveals a gene-rich protist and a potential impact on gene expression due to bacterial presence
-
doi: 10.1371/journal.pone.0009688
-
Moustafa, A., Evans, A. N., Kulis, D. M., Hackett, J. D., Erdner, D. L., Anderson, D. M., et al. (2010). Transcriptome profiling of a toxic dinoflagellate reveals a gene-rich protist and a potential impact on gene expression due to bacterial presence. PLoS ONE 5:e9688. doi: 10.1371/journal.pone.0009688
-
(2010)
PLoS ONE
, vol.5
-
-
Moustafa, A.1
Evans, A.N.2
Kulis, D.M.3
Hackett, J.D.4
Erdner, D.L.5
Anderson, D.M.6
-
42
-
-
27144456802
-
Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress
-
Nicot, N., Hausman, J.-F., Hoffmann, L., and Evers, D. (2005). Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. J. Exp. Bot. 56, 2907-2914.
-
(2005)
J. Exp. Bot.
, vol.56
, pp. 2907-2914
-
-
Nicot, N.1
Hausman, J.-F.2
Hoffmann, L.3
Evers, D.4
-
43
-
-
46949096495
-
Expression of cadmium carbonic anhydrase of diatoms in seawater
-
Park, H., McGinn, P. J., and Morel, E M. M. (2008). Expression of cadmium carbonic anhydrase of diatoms in seawater. Aquat. Microb. Ecol. 51, 183-193.
-
(2008)
Aquat. Microb. Ecol.
, vol.51
, pp. 183-193
-
-
Park, H.1
McGinn, P.J.2
Morel, E.M.M.3
-
44
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl, M. W. (2001). A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29, e45.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Pfaffl, M.W.1
-
45
-
-
1842483281
-
Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
-
Pfaffl, M. W., Tichopad, A., Prgomet, C., and Neuvians, T. P. (2004). Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations. Biotechnol. Lett. 26, 509-515.
-
(2004)
Biotechnol. Lett.
, vol.26
, pp. 509-515
-
-
Pfaffl, M.W.1
Tichopad, A.2
Prgomet, C.3
Neuvians, T.P.4
-
46
-
-
0035375137
-
Computational analysis of microarray data
-
Quackenbush, J. (2001). Computational analysis of microarray data. Nat. Rev. Genet. 2, 418-427.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 418-427
-
-
Quackenbush, J.1
-
47
-
-
0346728757
-
Guideline to reference gene selection for quantitative realtime PCR
-
Radonic, A., Thulke, S., Mackay, I. M., Landt, O., Siegert, W., and Nitsche, A. (2004). Guideline to reference gene selection for quantitative realtime PCR. Biochem. Biophys. Res. Commun. 313, 856-862.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.313
, pp. 856-862
-
-
Radonic, A.1
Thulke, S.2
Mackay, I.M.3
Landt, O.4
Siegert, W.5
Nitsche, A.6
-
48
-
-
79951769262
-
Response of the calcifying coccolithophore Emiliania huxleyi to low pH/high pCO2, from physiology to molecular level
-
Richier, S., Fiorini, S., Kerros, M.-E., von Dassow, P., and Gattuso, J.-P. (2010). Response of the calcifying coccolithophore Emiliania huxleyi to low pH/high pCO2, from physiology to molecular level. Mar. Biol. 158,551-560.
-
(2010)
Mar. Biol.
, vol.158
, pp. 551-560
-
-
Richier, S.1
Fiorini, S.2
Kerros, M.-E.3
von Dassow, P.4
Gattuso, J.-P.5
-
49
-
-
79951674462
-
Gene expression profiles of cytosolic heat shock proteins Hsp70 and Hsp90 from symbiotic dinoflagellates in response to thermal stress: possible implications for coral bleaching
-
Rosic, N. N., Pernice, M., Dove, S., Dunn, S., and Hoegh-Guldberg, O. (2010a). Gene expression profiles of cytosolic heat shock proteins Hsp70 and Hsp90 from symbiotic dinoflagellates in response to thermal stress: possible implications for coral bleaching. Cell Stress Chaperon. 16, 69-80.
-
(2010)
Cell Stress Chaperon
, vol.16
, pp. 69-80
-
-
Rosic, N.N.1
Pernice, M.2
Dove, S.3
Dunn, S.4
Hoegh-Guldberg, O.5
-
50
-
-
79957981213
-
Validation of housekeeping genes for gene expression studies in Symbiodinium exposed to thermal and light stress
-
Rosic, N. N., Pernice, M., Rodriguez-Lanetty, M., and Hoegh-Guldberg, O. (2010b). Validation of housekeeping genes for gene expression studies in Symbiodinium exposed to thermal and light stress. Mar. Biotechnol. 13, 355-365.
-
(2010)
Mar. Biotechnol.
, vol.13
, pp. 355-365
-
-
Rosic, N.N.1
Pernice, M.2
Rodriguez-Lanetty, M.3
Hoegh-Guldberg, O.4
-
51
-
-
33747894577
-
TM4 microarray software suite
-
Saeed, A. I., Bhagabati, N. K., Braisted, J. C., Liang, W., Sharov, V., Howe, E. A., et al. (2006). TM4 microarray software suite. MethodsEnzymol. 411, 134-193.
-
(2006)
MethodsEnzymol
, vol.411
, pp. 134-193
-
-
Saeed, A.I.1
Bhagabati, N.K.2
Braisted, J.C.3
Liang, W.4
Sharov, V.5
Howe, E.A.6
-
52
-
-
0037311919
-
TM4, a free, open-source system for microarray data management and analysis
-
Saeed, A. I., Sharov, V., White, J., Li, J., Liang, W., Bhagabati, N., et al. (2003). TM4, a free, open-source system for microarray data management and analysis. Biotechniques 34, 374-378.
-
(2003)
Biotechniques
, vol.34
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liang, W.5
Bhagabati, N.6
-
53
-
-
38749152385
-
Some thoughts on the concept of colimitation: three definitions and the importance of bioavailability
-
Saito, M. A., Goepfert, T. J., and Ritt, J. T. (2008). Some thoughts on the concept of colimitation: three definitions and the importance of bioavailability. Limnol. Oceanogr. 53, 276-290.
-
(2008)
Limnol. Oceanogr.
, vol.53
, pp. 276-290
-
-
Saito, M.A.1
Goepfert, T.J.2
Ritt, J.T.3
-
54
-
-
44949231424
-
Analyzing real-time PCR data by the comparative CT method
-
Schmittgen, T. D., and Livak, K. J. (2008). Analyzing real-time PCR data by the comparative CT method. Nat. Protoc. 3, 1101-1108.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1101-1108
-
-
Schmittgen, T.D.1
Livak, K.J.2
-
55
-
-
34848926649
-
Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum
-
Siaut, M., Heijde, M., Mangogna, M., Montsant, A., Coesel, S., Allen, A., et al. (2007). Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum. Gene 406, 23-35.
-
(2007)
Gene
, vol.406
, pp. 23-35
-
-
Siaut, M.1
Heijde, M.2
Mangogna, M.3
Montsant, A.4
Coesel, S.5
Allen, A.6
-
56
-
-
67651251795
-
Coastal strains of marine Synechococcus species exhibit increased tolerance to copper shock and a distinctive transcriptional response relative to those of open-ocean strains
-
Stuart, R. K., Dupont, C. L., Johnson, D. A., Paulsen, I. T., and Palenik, B. (2009). Coastal strains of marine Synechococcus species exhibit increased tolerance to copper shock and a distinctive transcriptional response relative to those of open-ocean strains. Appl. Environ. Microbiol. 75, 5047-5057.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 5047-5057
-
-
Stuart, R.K.1
Dupont, C.L.2
Johnson, D.A.3
Paulsen, I.T.4
Palenik, B.5
-
57
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie, S., Hughes, J. D., Campbell, M. J., Cho, R. J., and Church, G. M. (1999). Systematic determination of genetic network architecture. Nat. Genet. 22,281-285.
-
(1999)
Nat. Genet.
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
58
-
-
0037129827
-
Accurate normalization of real-time quan titative RT-PCR data by geomet ric averaging of multiple inter nal control genes
-
RESEARCH0034
-
Vandesompele, J., De Preter, K., Pattyn, E, Poppe, B., Van Roy, N., De Paepe, A., et al. (2002). Accurate normalization of real-time quan titative RT-PCR data by geomet ric averaging of multiple inter nal control genes. Genome Biol. 3, RESEARCH0034.
-
(2002)
Genome Biol
, pp. 3
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, E.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
-
59
-
-
84864944295
-
Characterization of putative iron responsive genes as species-specific indicators of iron stress in Thalassiosiroid diatoms
-
doi: 10.3389/fmicb.2011.00234
-
Whitney, L. P., Lins, J. J., Chappell, P. D., and Jenkins, B. D. (2011). Characterization of putative iron responsive genes as species-specific indicators of iron stress in Thalassiosiroid diatoms. Front. Microbio. 2:234. doi: 10.3389/fmicb.2011.00234
-
(2011)
Front. Microbio
, vol.2
, pp. 234
-
-
Whitney, L.P.1
Lins, J.J.2
Chappell, P.D.3
Jenkins, B.D.4
-
60
-
-
83355170641
-
Proteome changes driven by phosphorus deficiency and recovery in the brown tide-forming alga Aureococcus anophagefferens
-
doi: 10.1371/journal.pone.0028949
-
Wurch, L. L., Bertrand, E. M., Saito, M. A., Van Mooy, B. A. S., and Dyhrman, S. T. (2011). Proteome changes driven by phosphorus deficiency and recovery in the brown tide-forming alga Aureococcus anophagefferens. PLoS ONE 6:e28949. doi: 10.1371/journal.pone.0028949
-
(2011)
PLoS ONE
, vol.6
-
-
Wurch, L.L.1
Bertrand, E.M.2
Saito, M.A.3
Van Mooy, B.A.S.4
Dyhrman, S.T.5
-
61
-
-
78149495055
-
Empirical bayes analysis of sequencing-based transcriptional profiling without replicates
-
doi: 10.1186/1471-2105-11-564
-
Wu, Z., Jenkins, B. D., Rynearson, T. A., Dyhrman, S. T., Saito, M. A., Mercier, M., et al. (2010). Empirical bayes analysis of sequencing-based transcriptional profiling without replicates. BMC Bioinformatics 11:564. doi: 10.1186/1471-2105-11-564
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 564
-
-
Wu, Z.1
Jenkins, B.D.2
Rynearson, T.A.3
Dyhrman, S.T.4
Saito, M.A.5
Mercier, M.6
-
62
-
-
0035024021
-
Validating clustering for gene expression data
-
Yeung, K. Y., Haynor, D. R., and Ruzzo, W. L. (2001). Validating clustering for gene expression data. Bioinformatics 17, 309-318.
-
(2001)
Bioinformatics
, vol.17
, pp. 309-318
-
-
Yeung, K.Y.1
Haynor, D.R.2
Ruzzo, W.L.3
-
63
-
-
63349106223
-
Gene silencing by artificial microRNAs in Chlamydomonas
-
Zhao, T., Wang, W., Bai, X., and Qi, Y. (2009). Gene silencing by artificial microRNAs in Chlamydomonas. PlantJ. 58, 157-164.
-
(2009)
PlantJ
, vol.58
, pp. 157-164
-
-
Zhao, T.1
Wang, W.2
Bai, X.3
Qi, Y.4
-
64
-
-
85120105678
-
-
Methods in Marine Microbiology, ed J. H. Paul (New York, NY: Academic Press)
-
Zehr, J., and Turner, P. (2001). "Nitrogen fixation: nitrogenase genes and gene expression," in Methods in Marine Microbiology, ed J. H. Paul (New York, NY: Academic Press).
-
(2001)
Nitrogen fixation: nitrogenase genes and gene expression
-
-
Zehr, J.1
Turner, P.2
|