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Volumn 3, Issue JUL, 2012, Pages

Metabolic regulation of "Ca. Methylacidiphilum fumariolicum" soIV cells grown under different nitrogen and oxygen limitations

Author keywords

Metabolic regulation; Methane; Methylacidiphilum; Nitrogen; PMMO; RNA seq,verrucomicrobia

Indexed keywords


EID: 84875793956     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2012.00266     Document Type: Article
Times cited : (27)

References (58)
  • 1
    • 77957871124 scopus 로고    scopus 로고
    • Antioxidant pathways are up-regulated during biological nitrogen fixation to prevent ROS-induced nitrogenase inhibition in Gluconacetobacter diazotrophicus
    • Alquéres, S. M. C., Oliveira, J. H. M., Nogueira, E. M., Guedes, H. V., Oliveira, P. L., Camara, F., Baldani, J. I.,and Martins,O. B. (2010). Antioxidant pathways are up-regulated during biological nitrogen fixation to prevent ROS-induced nitrogenase inhibition in Gluconacetobacter diazotrophicus. Arch. Microbiol. 192, 835-841.
    • (2010) Arch. Microbiol. , vol.192 , pp. 835-841
    • Alquéres, S.M.C.1    Oliveira, J.H.M.2    Nogueira, E.M.3    Guedes, H.V.4    Oliveira, P.L.5    Camara, F.6    Baldani J.I.Martins, O.B.7
  • 2
    • 0035461235 scopus 로고    scopus 로고
    • nifH sequences and nitrogen fixation in type I and type II methanotrophs
    • Auman, A. J., Speake, C. C., and Lidstrom, M. E. (2001). nifH sequences and nitrogen fixation in type I and type II methanotrophs. Appl. Environ. Microbiol. 67, 4009-4016.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4009-4016
    • Auman, A.J.1    Speake, C.C.2    Lidstrom, M.E.3
  • 3
    • 48249112161 scopus 로고    scopus 로고
    • Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SCZ
    • Baani, M., and Liesack, W. (2008). Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SCZ. Proc. Natl. Acad. Sci. U.S.A. 105, 10203-10208.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 10203-10208
    • Baani, M.1    Liesack, W.2
  • 6
    • 0036318686 scopus 로고    scopus 로고
    • Genetics and control of CO2 assimilation in the chemoautotroph Ralstonia eutropha
    • Bowien, B., and Kusian, B. (2002). Genetics and control of CO2 assimilation in the chemoautotroph Ralstonia eutropha. Arch. Microbiol. 178, 85-93.
    • (2002) Arch. Microbiol. , vol.178 , pp. 85-93
    • Bowien, B.1    Kusian, B.2
  • 7
    • 79960619274 scopus 로고    scopus 로고
    • Model of the molecular basis for hydroxylamine oxidation and nitrous oxide production in methanotrophic bacteria
    • Campbell, M. A., Nyerges, G., Kozlowski, J. A., Poret-Peterson, A. T., Stein, L. Y., and Klotz, M. G. (2011). Model of the molecular basis for hydroxylamine oxidation and nitrous oxide production in methanotrophic bacteria. FEMS Microbiol. Lett. 322, 82-89.
    • (2011) FEMS Microbiol. Lett. , vol.322 , pp. 82-89
    • Campbell, M.A.1    Nyerges, G.2    Kozlowski, J.A.3    Poret-Peterson, A.T.4    Stein, L.Y.5    Klotz, M.G.6
  • 10
    • 0037967152 scopus 로고    scopus 로고
    • Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view
    • Chistoserdova, L., Chen, S. W., Lapidus, A., and Lidstrom, M. E. (2003). Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view. J. Bacteriol. 185, 2980-2987.
    • (2003) J. Bacteriol. , vol.185 , pp. 2980-2987
    • Chistoserdova, L.1    Chen, S.W.2    Lapidus, A.3    Lidstrom, M.E.4
  • 12
    • 77950649410 scopus 로고    scopus 로고
    • The global methane cycle: recent advances in understanding the microbial processes involved
    • Conrad, R. (2009). The global methane cycle: recent advances in understanding the microbial processes involved. Environ. Microbiol. Rep. 1, 285-292.
    • (2009) Environ. Microbiol. Rep. , vol.1 , pp. 285-292
    • Conrad, R.1
  • 13
    • 77957802374 scopus 로고    scopus 로고
    • Studying bacterial transcriptomes using RNA-seq
    • Croucher, N. J., and Thomson, N. R. (2010). Studying bacterial transcriptomes using RNA-seq. Curr. Opin. Microbiol. 13, 619-624.
    • (2010) Curr. Opin. Microbiol. , vol.13 , pp. 619-624
    • Croucher, N.J.1    Thomson, N.R.2
  • 14
    • 0035910125 scopus 로고    scopus 로고
    • Molecular characterization of structural genes coding for a membrane bound hydrogenase in Methylococcus capsulatus (Bath)
    • Csaki,R.,Hanczar,T.,Bodrossy,L.,Murrell, J. C., and Kovacs, K. L. (2001). Molecular characterization of structural genes coding for a membrane bound hydrogenase in Methylococcus capsulatus (Bath). FEMS Microbiol. Lett. 205, 203-207.
    • (2001) FEMS Microbiol. Lett. , vol.205 , pp. 203-207
    • Csaki, R.1    Hanczar, T.2    Bodrossy, L.3    Murrell, J.C.4    Kovacs, K.L.5
  • 15
    • 0017121778 scopus 로고
    • Invalidity of acetylene reduction assay in alkane utilizing, nitrogen-fixing bacteria
    • De Bont, J. A. M., and Mulder, E. G. (1976). Invalidity of acetylene reduction assay in alkane utilizing, nitrogen-fixing bacteria. Appl. Environ. Microbiol. 31, 640-647.
    • (1976) Appl. Environ. Microbiol. , vol.31 , pp. 640-647
    • De Bont, J.A.M.1    Mulder, E.G.2
  • 17
    • 21144452445 scopus 로고    scopus 로고
    • Methylocella species are facultatively methanotrophic
    • Dedysh, S. N., Knief, C., and Dunfield, P. F. (2005). Methylocella species are facultatively methanotrophic. J. Bacteriol. 187, 4665-4670.
    • (2005) J. Bacteriol. , vol.187 , pp. 4665-4670
    • Dedysh, S.N.1    Knief, C.2    Dunfield, P.F.3
  • 18
    • 2942530573 scopus 로고    scopus 로고
    • NifH and NifD phylogenies: an evolutionary basis for understanding nitrogen fixation capabilities of methanotrophic bacteria
    • Dedysh, S. N., Ricke, P., and Liesack, W. (2004). NifH and NifD phylogenies: an evolutionary basis for understanding nitrogen fixation capabilities of methanotrophic bacteria. Microbiology 150, 1301-1313.
    • (2004) Microbiology , vol.150 , pp. 1301-1313
    • Dedysh, S.N.1    Ricke, P.2    Liesack, W.3
  • 19
    • 70350134633 scopus 로고    scopus 로고
    • Deep-sea archaea fix and share nitrogen in methaneconsuming microbial consortia
    • Dekas,A. E.,Poretsky,R.S.,andOrphan, V. J. (2009). Deep-sea archaea fix and share nitrogen in methaneconsuming microbial consortia. Science 326, 422-426.
    • (2009) Science , vol.326 , pp. 422-426
    • Dekas, A.E.1    Poretsky, R.S.2    Orphan, V.J.3
  • 20
    • 4344704870 scopus 로고    scopus 로고
    • Genetic regulation of biological nitrogen fixation
    • Dixon, R., and Kahn, D. (2004). Genetic regulation of biological nitrogen fixation. Nat. Rev. Microbiol. 2, 621-631.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 621-631
    • Dixon, R.1    Kahn, D.2
  • 21
    • 77956297478 scopus 로고    scopus 로고
    • Methylocapsa aurea sp. nov., a facultative methanotroph possessing a particulate methane monooxygenase, and emended description of the genus Methylocapsa
    • Dunfield, P. F., Belova,S. E.,Vorob'Ev,A. V., Cornish, S. L., and Dedysh, S. N. (2010). Methylocapsa aurea sp. nov., a facultative methanotroph possessing a particulate methane monooxygenase, and emended description of the genus Methylocapsa. Int. J. Syst. Evol. Microbiol. 60, 2659-2664.
    • (2010) Int. J. Syst. Evol. Microbiol. , vol.60 , pp. 2659-2664
    • Dunfield, P.F.1    Belova, S.E.2    Vorob'Ev, A.V.3    Cornish, S.L.4    Dedysh, S.N.5
  • 23
    • 84860838927 scopus 로고    scopus 로고
    • Differential expression of particulate methane monooxygenase genes in the verrucomicrobial methanotroph "Methylacidiphilum kamchatkense" Kam1
    • Erikstad,H.A.,Jensen,S.,Keen,T. J.,and Birkeland, N. K. (2012). Differential expression of particulate methane monooxygenase genes in the verrucomicrobial methanotroph "Methylacidiphilum kamchatkense" Kam1. Extremophiles 16, 405-409.
    • (2012) Extremophiles , vol.16 , pp. 405-409
    • Erikstad, H.A.1    Jensen, S.2    Keen T.J.Birkeland, N.K.3
  • 26
    • 0036166885 scopus 로고    scopus 로고
    • Detection and localization of two hydrogenases in Methylococcus capsulatus (Bath) and their potential role in methane metabolism
    • Hanczar,T.,Csaki,R.,Bodrossy,L.,Murrell, J. C., and Kovacs, K. L. (2002). Detection and localization of two hydrogenases in Methylococcus capsulatus (Bath) and their potential role in methane metabolism. Arch. Microbiol. 177, 167-172.
    • (2002) Arch. Microbiol. , vol.177 , pp. 167-172
    • Hanczar, T.1    Csaki, R.2    Bodrossy, L.3    Murrell, J.C.4    Kovacs, K.L.5
  • 27
    • 0030003012 scopus 로고    scopus 로고
    • Methanotrophic bacteria
    • Hanson, R. S., and Hanson, T. E. (1996). Methanotrophic bacteria. Microbiol. Rev. 60, 439-471.
    • (1996) Microbiol. Rev. , vol.60 , pp. 439-471
    • Hanson, R.S.1    Hanson, T.E.2
  • 29
    • 38349102157 scopus 로고    scopus 로고
    • Methane oxidation at 55°C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum
    • Islam, T., Jensen, S., Reigstad, L. J., Larsen, O., and Birkeland, N. K. (2008). Methane oxidation at 55°C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum. Proc. Natl. Acad. Sci. U.S.A. 105, 300-304.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 300-304
    • Islam, T.1    Jensen, S.2    Reigstad, L.J.3    Larsen, O.4    Birkeland, N.K.5
  • 31
    • 77950688461 scopus 로고    scopus 로고
    • Nitrogen fixation by the verrucomicrobial methanotroph 'Methylacidiphilum fumariolicum' SolV
    • Khadem, A. F., Pol, A., Jetten, M. S. M., and Op den Camp, H. J. M. (2010). Nitrogen fixation by the verrucomicrobial methanotroph 'Methylacidiphilum fumariolicum' SolV. Microbiology 156, 1052-1059.
    • (2010) Microbiology , vol.156 , pp. 1052-1059
    • Khadem, A.F.1    Pol, A.2    Jetten, M.S.M.3    Op den Camp, H.J.M.4
  • 32
    • 80052338122 scopus 로고    scopus 로고
    • Autotrophic methanotrophy in Verrucomicrobia: Methylacidiphilum fumariolicum SolV uses the Calvin-Benson-Bassham cycle for carbon dioxide fixation
    • Khadem, A. F., Pol, A., Wieczorek, A., Mohammadi, S. S., Francoijs, K. J., Stunnenberg, H. G., Jetten, M. S. M., and Op den Camp, H. J. M. (2011). Autotrophic methanotrophy in Verrucomicrobia: Methylacidiphilum fumariolicum SolV uses the Calvin-Benson-Bassham cycle for carbon dioxide fixation. J. Bacteriol. 193, 4438-4446.
    • (2011) J. Bacteriol. , vol.193 , pp. 4438-4446
    • Khadem, A.F.1    Pol, A.2    Wieczorek, A.3    Mohammadi, S.S.4    Francoijs, K.J.5    Stunnenberg, H.G.6    Jetten, M.S.M.7    Op den Camp, H.J.M.8
  • 34
    • 37249025200 scopus 로고    scopus 로고
    • Nitrifier genomics and evolution of the nitrogen cycle
    • Klotz, M. G., and Stein, L. Y. (2008). Nitrifier genomics and evolution of the nitrogen cycle. FEMS Microbiol. Lett. 278, 146-456.
    • (2008) FEMS Microbiol. Lett. , vol.278 , pp. 146-456
    • Klotz, M.G.1    Stein, L.Y.2
  • 35
    • 79957665988 scopus 로고    scopus 로고
    • Microarrays, deep sequencing and the true measure of the transcriptome
    • doi:10.1186/1741-7007-9-34
    • Malone, J. H., and Oliver, B. (2011). Microarrays, deep sequencing and the true measure of the transcriptome. BMC Biol. 9, 34. doi:10.1186/1741-7007-9-34
    • (2011) BMC Biol , vol.9 , pp. 34
    • Malone, J.H.1    Oliver, B.2
  • 37
    • 0021018188 scopus 로고
    • Nitrogen fixation in obligate methanotrophs
    • Murrell, J. C., and Dalton, H. (1983). Nitrogen fixation in obligate methanotrophs. J. Gen. Microbiol. 129, 3481-3486.
    • (1983) J. Gen. Microbiol. , vol.129 , pp. 3481-3486
    • Murrell, J.C.1    Dalton, H.2
  • 38
    • 0034086965 scopus 로고    scopus 로고
    • Molecular biology and regulation of methane monooxygenase
    • Murrell, J. C., Gilbert, B., and McDonald, I. R. (2000). Molecular biology and regulation of methane monooxygenase. Arch. Microbiol. 173, 325-332.
    • (2000) Arch. Microbiol. , vol.173 , pp. 325-332
    • Murrell, J.C.1    Gilbert, B.2    McDonald, I.R.3
  • 39
    • 67650714488 scopus 로고    scopus 로고
    • Ammonia cometabolism and product inhibition vary considerably among species of methanotrophic bacteria
    • Nyerges, G., and Stein, L. Y. (2009). Ammonia cometabolism and product inhibition vary considerably among species of methanotrophic bacteria. FEMS Microbiol. Lett. 297, 131-136.
    • (2009) FEMS Microbiol. Lett. , vol.297 , pp. 131-136
    • Nyerges, G.1    Stein, L.Y.2
  • 40
    • 0026131772 scopus 로고
    • Cloning of nitrogenase structural genes from the obligate methanotroph Methylococcus capsulatus (Bath)
    • Oakley, C. J., and Murrell, J. C. (1991). Cloning of nitrogenase structural genes from the obligate methanotroph Methylococcus capsulatus (Bath). FEMS Microbiol. Lett. 78, 121-126.
    • (1991) FEMS Microbiol. Lett. , vol.78 , pp. 121-126
    • Oakley, C.J.1    Murrell, J.C.2
  • 42
    • 80052879985 scopus 로고    scopus 로고
    • Distribution and selection of poly-3hydroxybutyrate production capacity in methanotrophic proteobacteria
    • Pieja, A. J., Rostkowski, K. H., and Criddle, C. S. (2011). Distribution and selection of poly-3hydroxybutyrate production capacity in methanotrophic proteobacteria. Microb. Ecol. 62, 564-573.
    • (2011) Microb. Ecol. , vol.62 , pp. 564-573
    • Pieja, A.J.1    Rostkowski, K.H.2    Criddle, C.S.3
  • 45
    • 0019262924 scopus 로고
    • Oxygen and hydrogen in biological nitrogen fixation
    • Robson, R. L., and Postgate, J. R. (1980). Oxygen and hydrogen in biological nitrogen fixation. Annu. Rev. Microbiol. 34, 183-207.
    • (1980) Annu. Rev. Microbiol. , vol.34 , pp. 183-207
    • Robson, R.L.1    Postgate, J.R.2
  • 47
    • 80052727912 scopus 로고    scopus 로고
    • Facultative methanotrophy: false leads, true results, and suggestions for future research
    • Semrau, J. D., DiSpirito, A. A., and Vuilleumier, S. (2011). Facultative methanotrophy: false leads, true results, and suggestions for future research. FEMS Microbiol. Lett. 323, 1-12.
    • (2011) FEMS Microbiol. Lett. , vol.323 , pp. 1-12
    • Semrau, J.D.1    DiSpirito, A.A.2    Vuilleumier, S.3
  • 48
    • 81855220893 scopus 로고    scopus 로고
    • Nitrifying and denitrifying pathways of methanotrophic bacteria
    • Stein, L. Y., and Klotz, M. G. (2011). Nitrifying and denitrifying pathways of methanotrophic bacteria. Biochem. Soc. Trans. 39, 1826-1831.
    • (2011) Biochem. Soc. Trans. , vol.39 , pp. 1826-1831
    • Stein, L.Y.1    Klotz, M.G.2
  • 49
    • 0032923140 scopus 로고    scopus 로고
    • Role of multiple gene copies in particulate methane monooxygenase activity in the methane-oxidizing bacterium Methylococcus capsulatus Bath
    • Stolyar, S., Costello, A. M., Peeples, T. L., and Lidstrom, M. E. (1999). Role of multiple gene copies in particulate methane monooxygenase activity in the methane-oxidizing bacterium Methylococcus capsulatus Bath. Microbiology 145, 1235-1244.
    • (1999) Microbiology , vol.145 , pp. 1235-1244
    • Stolyar, S.1    Costello, A.M.2    Peeples, T.L.3    Lidstrom, M.E.4
  • 50
    • 0024262354 scopus 로고
    • Characteristics of a nitrogen fixing methanotroph Methylocystis T-1
    • Takeda, K. (1988). Characteristics of a nitrogen fixing methanotroph, Methylocystis T-1. Antonie Van Leeuwenhoek 54, 521-534.
    • (1988) Antonie Van Leeuwenhoek , vol.54 , pp. 521-534
    • Takeda, K.1
  • 51
    • 79953747793 scopus 로고    scopus 로고
    • A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs
    • Tavormina, P. L., Orphan, V. J., Kalyuzhnaya, M. G., Jetten, M. S. M., and Klotz, M. G. (2011). A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs. Environ. Microbiol. Rep. 3, 91-100.
    • (2011) Environ. Microbiol. Rep. , vol.3 , pp. 91-100
    • Tavormina, P.L.1    Orphan, V.J.2    Kalyuzhnaya, M.G.3    Jetten, M.S.M.4    Klotz, M.G.5
  • 52
    • 0016162059 scopus 로고
    • Cathepsin b2 measurement by sensitive fluorometric ammonia analysis
    • Taylor, S., Ninjoor, V., Dowd, D. M., and Tappel, A. L. (1974). Cathepsin b2 measurement by sensitive fluorometric ammonia analysis. Anal. Biochem. 60, 153-162.
    • (1974) Anal. Biochem. , vol.60 , pp. 153-162
    • Taylor, S.1    Ninjoor, V.2    Dowd, D.M.3    Tappel, A.L.4
  • 54
    • 33744927902 scopus 로고    scopus 로고
    • The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance
    • Wagner, M., and Horn, M. (2006). The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance. Curr. Opin. Biotechnol. 17, 241-249.
    • (2006) Curr. Opin. Biotechnol. , vol.17 , pp. 241-249
    • Wagner, M.1    Horn, M.2
  • 55
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • Wang, Z., Gerstein, M., and Snyder, M. (2009). RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 10, 57-63.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 56
    • 0025393102 scopus 로고
    • Dynamics of microbial-growth and cell composition in batch culture
    • Wanner, U., and Egli, T. (1990). Dynamics of microbial-growth and cell composition in batch culture. FEMS Microbiol. Rev. 75, 19-44.
    • (1990) FEMS Microbiol. Rev. , vol.75 , pp. 19-44
    • Wanner, U.1    Egli, T.2
  • 58
    • 0141481207 scopus 로고    scopus 로고
    • Wide distribution of a novel pmoA-like gene copy among type II methanotrophs, and its expression in Methylocystis strain SC2
    • Yimga, M. T., Dunfield, P. F., Ricke, P., Heyer, J., and Liesack, W. (2003). Wide distribution of a novel pmoA-like gene copy among type II methanotrophs, and its expression in Methylocystis strain SC2. Appl. Environ. Microbiol. 69, 5593-5602.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 5593-5602
    • Yimga, M.T.1    Dunfield, P.F.2    Ricke, P.3    Heyer, J.4    Liesack, W.5


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