메뉴 건너뛰기




Volumn 100, Issue 4, 2013, Pages 664-678

Multilocus approach to species recognition in the Cladonia humilis complex (Cladoniaceae, Ascomycota)

Author keywords

Ascomycota; Cladonia; Cladoniaceae; ef1 ; Genealogical sorting index; Lichen; rpb2; Species delimitation

Indexed keywords

CONSPECIFIC; GENEALOGY; LICHEN; MORPHOLOGY; PHYLOGENETICS; SECONDARY METABOLITE;

EID: 84875719848     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.1200162     Document Type: Article
Times cited : (21)

References (104)
  • 1
    • 0001641212 scopus 로고
    • Correlation of the chemical and morphological characters in Cladonia chlorophaea and allied lichens
    • AHTI, T. 1966. Correlation of the chemical and morphological characters in Cladonia chlorophaea and allied lichens. Annales Botanici Fennici 3: 380-389.
    • (1966) Annales Botanici Fennici , vol.3 , pp. 380-389
    • Ahti, T.1
  • 2
    • 0000728086 scopus 로고
    • Taxonomic revision of C ladonia gracilis and its allies
    • AHTI, T. 1980. Taxonomic revision of C ladonia gracilis and its allies. Annales Botanici Fennici 17: 195-243.
    • (1980) Annales Botanici Fennici , vol.17 , pp. 195-243
    • Ahti, T.1
  • 3
    • 0001930606 scopus 로고
    • Names in current use in the Cladoniaceae (lichen-forming ascomycetes) in the ranks of genus to variety
    • AHTI, T. 1993. Names in current use in the Cladoniaceae (lichen-forming ascomycetes) in the ranks of genus to variety. Regnum Vegetabile 128: 58-106.
    • (1993) Regnum Vegetabile , vol.128 , pp. 58-106
    • Ahti, T.1
  • 4
    • 0038192263 scopus 로고    scopus 로고
    • A revision of Cladonia stricta
    • AHTI, T. 1998. A revision of Cladonia stricta. Folia Cryptogamica Estonica 32: 5-8.
    • (1998) Folia Cryptogamica Estonica , vol.32 , pp. 5-8
    • Ahti, T.1
  • 6
    • 77149149365 scopus 로고    scopus 로고
    • Cladonia
    • In T. H. Nash III, B. D. Ryan, C. Gries, and F. Bungartz [eds.], Arizona State University, Tempe, Arizona, USA
    • AHTI, T., AND S. HAMMER. 2002. Cladonia. In T. H. Nash III, B. D. Ryan, C. Gries, and F. Bungartz [eds.], Lichen fl ora of the Greater Sonoran Desert Region, vol. 1, 131-158. Arizona State University, Tempe, Arizona, USA.
    • (2002) Lichen fl ora of the Greater Sonoran Desert Region, vol. 1 , pp. 131-158
    • Ahti, T.1    Hammer, S.2
  • 7
    • 0022225038 scopus 로고
    • Cladina stygia, a common, overlooked species of reindeer lichen
    • AHTI, T., AND S. HYVÖNEN. 1985. Cladina stygia, a common, overlooked species of reindeer lichen. Annales Botanici Fennici 22: 223-229.
    • (1985) Annales Botanici Fennici , vol.22 , pp. 223-229
    • Ahti, T.1    Hyvönen, S.2
  • 9
    • 0034896444 scopus 로고    scopus 로고
    • Cladonia monomorpha, a neglected cup lichen from Europe
    • APTROOT, A., J. M. SIPMAN, AND C. M. VAN HERK. 2001. Cladonia monomorpha, a neglected cup lichen from Europe. Lichenologist 33: 271-283.
    • (2001) Lichenologist , vol.33 , pp. 271-283
    • Aptroot, A.1    Sipman, J.M.2    van Herk, C.M.3
  • 10
    • 0012159258 scopus 로고
    • Two new lichens: Cladonia paeminosa and C. humilis var
    • ARCHER, A. W. 1989. Two new lichens: Cladonia paeminosa and C. humilis var. bourgeanica. Muelleria 7: 1-5.
    • (1989) Bourgeanica. Muelleria , vol.7 , pp. 1-5
    • Archer, A.W.1
  • 11
    • 34447127538 scopus 로고    scopus 로고
    • Parmelia quercina (Parmeliaceae, Lecanorales) includes four phylogenetically supported morphospecies
    • ARGÜELLO, A., R. DEL PRADO, P. CUBAS, AND A. CRESPO. 2007. Parmelia quercina (Parmeliaceae, Lecanorales) includes four phylogenetically supported morphospecies. Botanical Journal of the Linnean Society 91: 455-467.
    • (2007) Botanical Journal of the Linnean Society , vol.91 , pp. 455-467
    • Argüello, A.1    Del Prado, R.2    Cubas, P.3    Crespo, A.4
  • 13
    • 0031810246 scopus 로고    scopus 로고
    • Contribution to the study of the genera Cladina and Cladonia in Spain. III
    • BURGAZ, A. R., AND T. AHTI. 1998. Contribution to the study of the genera Cladina and Cladonia in Spain. III. Nova Hedwigia 66: 549-555.
    • (1998) Nova Hedwigia , vol.66 , pp. 549-555
    • Burgaz, A.R.1    Ahti, T.2
  • 15
    • 33244493158 scopus 로고    scopus 로고
    • Testing "species pair" hypotheses: Evolutionary processes in the lichen-forming species complex Porpidia fl avocoerulescens and Porpidia melinodes
    • BUSCHBOM, J., AND G. M. MUELLER. 2006. Testing "species pair" hypotheses: Evolutionary processes in the lichen-forming species complex Porpidia fl avocoerulescens and Porpidia melinodes. Molecular Biology and Evolution 23: 574-586.
    • (2006) Molecular Biology and Evolution , vol.23 , pp. 574-586
    • Buschbom, J.1    Mueller, G.M.2
  • 16
    • 77953729511 scopus 로고    scopus 로고
    • Species delimitation using a combined coalescent and information-theoretic approach: An example from North American Myotis bats
    • CARSTENS, B. C., AND T. A. DEWEY. 2010. Species delimitation using a combined coalescent and information-theoretic approach: An example from North American Myotis bats. Systematic Biology 59: 400-414.
    • (2010) Systematic Biology , vol.59 , pp. 400-414
    • Carstens, B.C.1    Dewey, T.A.2
  • 17
    • 34249700809 scopus 로고    scopus 로고
    • Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: An example from Melanoplus grasshoppers
    • CARSTENS, B. C., AND L. L. KNOWLES. 2007. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: An example from Melanoplus grasshoppers. Systematic Biology 56: 400-411.
    • (2007) Systematic Biology , vol.56 , pp. 400-411
    • Carstens, B.C.1    Knowles, L.L.2
  • 18
    • 51249115162 scopus 로고    scopus 로고
    • Phylogenetic utility of two existing and four novel nuclear gene loci in reconstructing Tree of Life of rayfi nned fi shes: The order Cypriniformes (Ostariophysi) as a case study
    • CHEN, W.-J., M. MIYA, K. SAITOH, AND R. L. MAYDEN. 2008. Phylogenetic utility of two existing and four novel nuclear gene loci in reconstructing Tree of Life of rayfi nned fi shes: The order Cypriniformes (Ostariophysi) as a case study. Gene 423: 125-134.
    • (2008) Gene , vol.423 , pp. 125-134
    • Chen, W.-J.1    Miya, M.2    Saitoh, K.3    Mayden, R.L.4
  • 19
    • 0033771358 scopus 로고    scopus 로고
    • TCS: A computer program to estimate genealogies
    • CLEMENT, M., D. POSADAS, AND A. K. CRANDALL. 2000. TCS: A computer program to estimate genealogies. Molecular Ecology 9: 1657-1660.
    • (2000) Molecular Ecology , vol.9 , pp. 1657-1660
    • Clement, M.1    Posadas, D.2    Crandall, A.K.3
  • 20
    • 51549089796 scopus 로고    scopus 로고
    • A genealogical approach to quantifying lineage divergence
    • CUMMINGS, M. P., M. C. NEEL, AND K. L. SHAW. 2008. A genealogical approach to quantifying lineage divergence. Evolution 62: 2411-2422.
    • (2008) Evolution , vol.62 , pp. 2411-2422
    • Cummings, M.P.1    Neel, M.C.2    Shaw, K.L.3
  • 22
    • 77957245606 scopus 로고    scopus 로고
    • Distinction of Cladonia rei and C. subulata based on molecular, chemical and morphological characteristics
    • DOLNIK, C., A. BECK, AND D. ZARABSKA. 2010. Distinction of Cladonia rei and C. subulata based on molecular, chemical and morphological characteristics. Lichenologist 42: 373-386.
    • (2010) Lichenologist , vol.42 , pp. 373-386
    • Dolnik, C.1    Beck, A.2    Zarabska, D.3
  • 23
    • 77952169709 scopus 로고    scopus 로고
    • Convergent evolution in Cladonia gracilis and allies
    • FONTAINE, K. M., T. AHTI, AND M. D. PIERCEY-NORMORE. 2010. Convergent evolution in Cladonia gracilis and allies. Lichenologist 42: 323-338
    • (2010) Lichenologist , vol.42 , pp. 323-338
    • Fontaine, K.M.1    Ahti, T.2    Piercey-Normore, M.D.3
  • 24
    • 0027580147 scopus 로고
    • ITS primers with enhanced specifi city for Basidiomycetes-Application to the identifi cation of mycorrhiza and rust
    • GARDES, M., AND T. D. BRUNS. 1993. ITS primers with enhanced specifi city for Basidiomycetes-Application to the identifi cation of mycorrhiza and rust. Molecular Ecology 2: 113-118.
    • (1993) Molecular Ecology , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 25
    • 79960108950 scopus 로고    scopus 로고
    • Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences
    • GAZIS, R., S. REHNER, AND P. CHAVERRI. 2011. Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences. Molecular Ecology 20: 3001-3013.
    • (2011) Molecular Ecology , vol.20 , pp. 3001-3013
    • Gazis, R.1    Rehner, S.2    Chaverri, P.3
  • 26
    • 0043287898 scopus 로고    scopus 로고
    • Phylogenetic inferences based on nrDNA sequences support fi ve morphospecies within the Peltigera didactyla complex (Lichenized Ascomycota)
    • GOFFINET, B., J. MIADLIKOWSKA, AND T. GOWARD. 2003. Phylogenetic inferences based on nrDNA sequences support fi ve morphospecies within the Peltigera didactyla complex (Lichenized Ascomycota). Bryologist 106: 349-369.
    • (2003) Bryologist , vol.106 , pp. 349-369
    • Goffinet, B.1    Miadlikowska, J.2    Goward, T.3
  • 28
    • 60949091098 scopus 로고    scopus 로고
    • Species delimitation in downy mildews: The case of Hyaloperonospora in the light of nuclear ribosomal ITS and LSU sequences
    • GÖKER, M., H. V OGLMAYR, G. G ARCÍA-BLÁZQUEZ, AND F. OBERWINKLER. 2009. Species delimitation in downy mildews: The case of Hyaloperonospora in the light of nuclear ribosomal ITS and LSU sequences. Mycological Research 113: 308-325.
    • (2009) Mycological Research , vol.113 , pp. 308-325
    • Göker, M.1    Oglmayr, H.V.2    Arcía-Blázquez, G.G.3    Oberwinkler, F.4
  • 29
    • 61849174857 scopus 로고    scopus 로고
    • Species delimitation in lemurs: Multiple genetics loci reveal low levels of species diversity in the genus Cheirofaleus
    • GROENEVELD, L. F., D. W. WEISROCK, R. M. RASOLOARISON, A. D. YODER, AND P. M. KAPPELER. 2009. Species delimitation in lemurs: Multiple genetics loci reveal low levels of species diversity in the genus Cheirofaleus. BMC Evolutionary Biology 9: 30.
    • (2009) BMC Evolutionary Biology , vol.9 , pp. 30
    • Groeneveld, L.F.1    Weisrock, D.W.2    Rasoloarison, R.M.3    Yoder, A.D.4    Kappeler, P.M.5
  • 30
    • 77954476819 scopus 로고    scopus 로고
    • Specieslevel phylogeny of Allium subgenus Melanocrommyum: Incomplete lineage sorting, hybridization and trnF gene duplication
    • GURUSHIDZE, M., R. M. FRITSCH, AND F. R. BLATTNER. 2010. Specieslevel phylogeny of Allium subgenus Melanocrommyum: Incomplete lineage sorting, hybridization and trnF gene duplication. Taxon 53: 829-840.
    • (2010) Taxon , vol.53 , pp. 829-840
    • Gurushidze, M.1    Fritsch, R.M.2    Blattner, F.R.3
  • 31
    • 1642385921 scopus 로고
    • A preliminary synopsis of the species of Cladonia in California and adjacent Oregon
    • HAMMER, S. 1991. A preliminary synopsis of the species of Cladonia in California and adjacent Oregon. Mycotaxon 40: 169-197.
    • (1991) Mycotaxon , vol.40 , pp. 169-197
    • Hammer, S.1
  • 32
    • 0003183551 scopus 로고
    • A synopsis of the genus Cladonia in the northwestern United States
    • HAMMER, S. 1995. A synopsis of the genus Cladonia in the northwestern United States. Bryologist 98: 1-28.
    • (1995) Bryologist , vol.98 , pp. 1-28
    • Hammer, S.1
  • 33
    • 0035697905 scopus 로고    scopus 로고
    • Additions to the lichen family Cladoniaceae in Australia
    • HAMMER, S. 2001. Additions to the lichen family Cladoniaceae in Australia. Bryologist 104: 560-575.
    • (2001) Bryologist , vol.104 , pp. 560-575
    • Hammer, S.1
  • 34
    • 0002105766 scopus 로고
    • New and interesting species of Cladonia from California
    • HAMMER, S., AND T. AHTI. 1990. New and interesting species of Cladonia from California. Mycotaxon 37: 335-348.
    • (1990) Mycotaxon , vol.37 , pp. 335-348
    • Hammer, S.1    Ahti, T.2
  • 35
    • 34247626787 scopus 로고    scopus 로고
    • Multiple nuclear loci reveal patterns of incomplete lineage sorting and complex species history within western mouse lemurs (Microcebus)
    • HECKMAN, K. L., C. L. MARIANI, R. RASOLOARISON, AND A. D. YODER. 2007. Multiple nuclear loci reveal patterns of incomplete lineage sorting and complex species history within western mouse lemurs (Microcebus). Molecular Phylogenetics and Evolution 43: 353-367.
    • (2007) Molecular Phylogenetics and Evolution , vol.43 , pp. 353-367
    • Heckman, K.L.1    Mariani, C.L.2    Rasoloarison, R.3    Yoder, A.D.4
  • 36
    • 0007168391 scopus 로고
    • The Cladonia chlorophaea-C. fi mbriata complex in western Washington
    • HENNINGS, C. J. 1983. The Cladonia chlorophaea-C. fi mbriata complex in western Washington. Bryologist 86: 64-73.
    • (1983) Bryologist , vol.86 , pp. 64-73
    • Hennings, C.J.1
  • 37
    • 79851486202 scopus 로고    scopus 로고
    • Molecular analyses reveal semi-cryptic in Xanthoparmelia tasmanica
    • HODKINSON, B. P., AND J. C. L ENDEMER. 2011. Molecular analyses reveal semi-cryptic in Xanthoparmelia tasmanica. Bibliotheca Lichenologica 106: 115-126.
    • (2011) Bibliotheca Lichenologica , vol.106 , pp. 115-126
    • Hodkinson, B.P.1    Endemer, J.C.L.2
  • 38
    • 0001847430 scopus 로고
    • Notes on Cladonia asahinae, C. conista and the C. grayi group in Norway
    • HOLIEN, H., AND T. TØNSBERG. 1985. Notes on Cladonia asahinae, C. conista and the C. grayi group in Norway. Gunneria 51: 1-26.
    • (1985) Gunneria , vol.51 , pp. 1-26
    • Holien, H.1    Tønsberg, T.2
  • 39
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • HUELSENBECK, J., AND F. RONQUIST. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.1    Ronquist, F.2
  • 40
    • 0005519666 scopus 로고
    • The composition and contents of aromatic lichen substances in Cladonia, section Cocciferae
    • HUOVINEN, K., T. AHTI, AND S. STENROOS. 1989. The composition and contents of aromatic lichen substances in Cladonia, section Cocciferae. Annales Botanici Fennici 26: 133-148.
    • (1989) Annales Botanici Fennici , vol.26 , pp. 133-148
    • Huovinen, K.1    Ahti, T.2    Stenroos, S.3
  • 41
    • 0005611937 scopus 로고
    • The composition and contents of aromatic lichen substances in Cladonia section Cladonia and group Furcatae
    • HUOVINEN, K., T. AHTI, AND S. STENROOS. 1990. The composition and contents of aromatic lichen substances in Cladonia section Cladonia and group Furcatae. Bibliotheca Lichenologica 38: 209-241.
    • (1990) Bibliotheca Lichenologica , vol.38 , pp. 209-241
    • Huovinen, K.1    Ahti, T.2    Stenroos, S.3
  • 42
    • 78449288420 scopus 로고    scopus 로고
    • Cladonia
    • In C. W. Smith, A. Aptroot, B. J. Coppins, A. Fletcher, O. L. Gilbert, P. W. James, and P. A. Wolseley [eds.], Natural History Museum Publications, London, UK
    • JAMES, P. W. 2009. Cladonia. In C. W. Smith, A. Aptroot, B. J. Coppins, A. Fletcher, O. L. Gilbert, P. W. James, and P. A. Wolseley [eds.], The lichens of Great Britain and Ireland, 309-338. Natural History Museum Publications, London, UK.
    • (2009) The lichens of Great Britain and Ireland , pp. 309-338
    • James, P.W.1
  • 43
    • 84887129118 scopus 로고
    • New lichen to Norway and Sweden: Cladonia cyathomorpha
    • JØLLE, O. H. 1977. New lichen to Norway and Sweden: Cladonia cyathomorpha. Blyttia 35: 163-166.
    • (1977) Blyttia , vol.35 , pp. 163-166
    • Jølle, O.H.1
  • 44
    • 77952127920 scopus 로고    scopus 로고
    • Cladonia pyxidata and C. pocillum: Genetic evidence to regard them as conspecifi c
    • KOTELKO, R., AND M. D. PIERCEY-NORMORE. 2010. Cladonia pyxidata and C. pocillum: Genetic evidence to regard them as conspecifi c. Mycologia 102: 534-545.
    • (2010) Mycologia , vol.102 , pp. 534-545
    • Kotelko, R.1    Piercey-Normore, M.D.2
  • 45
    • 57849121115 scopus 로고
    • Morphological and chemical correlations in the Cladonia chlorophaea complex
    • KRISTINSSON, H. 1971. Morphological and chemical correlations in the Cladonia chlorophaea complex. Bryologist 74: 13-17.
    • (1971) Bryologist , vol.74 , pp. 13-17
    • Kristinsson, H.1
  • 46
    • 0033451796 scopus 로고    scopus 로고
    • A phylogenetic evaluation of the Ramalina americana chemotype complex (lichenized Ascomycota, Ramalinaceae) based on rDNA ITS sequence data
    • LAGRECA, S. 1999. A phylogenetic evaluation of the Ramalina americana chemotype complex (lichenized Ascomycota, Ramalinaceae) based on rDNA ITS sequence data. Bryologist 102: 602-618.
    • (1999) Bryologist , vol.102 , pp. 602-618
    • Lagreca, S.1
  • 47
    • 5344252424 scopus 로고    scopus 로고
    • High phylogenetic diversity among corticioid homobasidiomycetes
    • LARSSON, K.-H., E. LARSSON, AND U. KÕLJALG. 2004. High phylogenetic diversity among corticioid homobasidiomycetes. Mycological Research 108: 983-1002.
    • (2004) Mycological Research , vol.108 , pp. 983-1002
    • Larsson, K.-H.1    Larsson, E.2    Kõljalg, U.3
  • 48
    • 84859079781 scopus 로고    scopus 로고
    • Perspectives on chemotaxonomy: Molecular data confi rm the existence of two morphologically distinct species within a chemically defi ned Lepraria caesiella (Stereocaulaceae)
    • LENDEMER, J. C. 2012. Perspectives on chemotaxonomy: Molecular data confi rm the existence of two morphologically distinct species within a chemically defi ned Lepraria caesiella (Stereocaulaceae). Castanea 77: 89-105.
    • (2012) Castanea , vol.77 , pp. 89-105
    • Lendemer, J.C.1
  • 49
    • 77957230508 scopus 로고    scopus 로고
    • The wisdom of fools: New molecular and morphological insights into the North American apodetiate species of Cladonia
    • LENDEMER, J. C., AND B. P. HODKINSON. 2009. The wisdom of fools: New molecular and morphological insights into the North American apodetiate species of Cladonia. Opuscula Philolichenum 7: 79-100.
    • (2009) Opuscula Philolichenum , vol.7 , pp. 79-100
    • Lendemer, J.C.1    Hodkinson, B.P.2
  • 50
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • LIBRADO, P., AND J. ROZAS. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 51
    • 15944429746 scopus 로고    scopus 로고
    • Molecular evidence supports the distinction between Xanthoria parietina and X. aureola (Teloschistales, lichenized Ascomycota)
    • LINDBLOM, L., AND S. EKMAN. 2005. Molecular evidence supports the distinction between Xanthoria parietina and X. aureola (Teloschistales, lichenized Ascomycota). Mycological Research 109: 187-199.
    • (2005) Mycological Research , vol.109 , pp. 187-199
    • Lindblom, L.1    Ekman, S.2
  • 52
    • 0032750944 scopus 로고    scopus 로고
    • Phylogenetic relationships among Ascomycetes: Evidence from an RNA polymerase II subunit
    • LIU, Y. J., S. WHELEN, AND B. D. HALL. 1999. Phylogenetic relationships among Ascomycetes: Evidence from an RNA polymerase II subunit. Molecular Biology and Evolution 16: 1799-1808.
    • (1999) Molecular Biology and Evolution , vol.16 , pp. 1799-1808
    • Liu, Y.J.1    Whelen, S.2    Hall, B.D.3
  • 53
    • 39549084164 scopus 로고    scopus 로고
    • Phylogenetic patterns of morphological and chemical characters and reproductive mode in the Heterodermia obscurata group in Costa Rica (Ascomycota, Physciaceae)
    • LÜCKING, R., R. DEL-PRADO, H. T. LUMBSCH, S. WILL-WOLF, A. APTROOT, H. J. M. SIPMAN, L. UMANA, AND J. L. CHAVES. 2008. Phylogenetic patterns of morphological and chemical characters and reproductive mode in the Heterodermia obscurata group in Costa Rica (Ascomycota, Physciaceae). Systematics and Biodiversity 6: 31-41.
    • (2008) Systematics and Biodiversity , vol.6 , pp. 31-41
    • Lücking, R.1    Del-Prado, R.2    Lumbsch, H.T.3    Will-Wolf, S.4    Aptroot, A.5    Sipman, H.J.M.6    Umana, L.7    Chaves, J.L.8
  • 54
    • 80755189426 scopus 로고    scopus 로고
    • Goodbye morphology? A paradigm shift in the delimitation of species in lichenized fungi
    • LUMBSCH, H. T., AND S. D. LEAVITT. 2011. Goodbye morphology? A paradigm shift in the delimitation of species in lichenized fungi. Fungal Diversity 50: 59-70.
    • (2011) Fungal Diversity , vol.50 , pp. 59-70
    • Lumbsch, H.T.1    Leavitt, S.D.2
  • 55
    • 50049128523 scopus 로고    scopus 로고
    • Species recognition and phylogeny of Thelotrema species in Australia (Ostropales, Ascomycota)
    • LUMBSCH, H. T., A. M ANGOLD, M. P. MARTÍN, AND J. A. ELIX. 2008a. Species recognition and phylogeny of Thelotrema species in Australia (Ostropales, Ascomycota). Australian Systematic Botany 21: 217-227.
    • (2008) Australian Systematic Botany , vol.21 , pp. 217-227
    • Lumbsch, H.T.1    Angold, A.M.2    Martín, M.P.3    Elix, J.A.4
  • 56
    • 44449172394 scopus 로고    scopus 로고
    • The phylogenetic position of Heamatommataceae (Lecanorales, Ascomycota), with notes on secondary chemistry and species delimitation
    • LUMBSCH, H. T., M. P. NELSEN, AND R. LÜCKING. 2008b. The phylogenetic position of Heamatommataceae (Lecanorales, Ascomycota), with notes on secondary chemistry and species delimitation. Nova Hedwigia 86: 105-114.
    • (2008) Nova Hedwigia , vol.86 , pp. 105-114
    • Lumbsch, H.T.1    Nelsen, M.P.2    Lücking, R.3
  • 58
    • 0034351388 scopus 로고    scopus 로고
    • Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology
    • LUTZONI, F., P. WAGNER, V. REEB, AND S. ZOLLER. 2000. Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. Systematic Biology 49: 628-651.
    • (2000) Systematic Biology , vol.49 , pp. 628-651
    • Lutzoni, F.1    Wagner, P.2    Reeb, V.3    Zoller, S.4
  • 59
    • 67649536036 scopus 로고    scopus 로고
    • Species delimitation and phylogeny of a New Zealand plant species radiation
    • MEUDT, H. M., P. J. LOCKHART, AND D. BRYANT. 2009. Species delimitation and phylogeny of a New Zealand plant species radiation. BCM Evolution Biology 9: 111.
    • (2009) BCM Evolution Biology , vol.9 , pp. 111
    • Meudt, H.M.1    Lockhart, P.J.2    Bryant, D.3
  • 61
    • 2342584770 scopus 로고    scopus 로고
    • Phylogeny and phylogeography of the Liolaemus darwinii complex (Squamata: Liolaemidae): Evidence for introgression and incomplete lineage sorting
    • MORANDO, M., L. AVILA, J. BAKER, AND J. W. SITES. 2004. Phylogeny and phylogeography of the Liolaemus darwinii complex (Squamata: Liolaemidae): Evidence for introgression and incomplete lineage sorting. Evolution 58: 842-861.
    • (2004) Evolution , vol.58 , pp. 842-861
    • Morando, M.1    Avila, L.2    Baker, J.3    Sites, J.W.4
  • 62
    • 0037389725 scopus 로고    scopus 로고
    • Phylogeny of bipolar Cladonia arbuscula and Cladonia mitis (Lecanorales, Euascomycetes)
    • MYLLYS, L., S. STENROOS, A. THELL, AND T. AHTI. 2003. Phylogeny of bipolar Cladonia arbuscula and Cladonia mitis (Lecanorales, Euascomycetes). Molecular Phylogenetics and Evolution 27: 58-69.
    • (2003) Molecular Phylogenetics and Evolution , vol.27 , pp. 58-69
    • Myllys, L.1    Stenroos, S.2    Thell, A.3    Ahti, T.4
  • 63
    • 61849155173 scopus 로고    scopus 로고
    • Assessing clonality and chemotype monophyly in Thamnolia (Icmadophilaceae)
    • NELSEN, M. P., AND A. GARGAS. 2009. Assessing clonality and chemotype monophyly in Thamnolia (Icmadophilaceae). The Bryologist 112: 42-53.
    • (2009) The Bryologist , vol.112 , pp. 42-53
    • Nelsen, M.P.1    Gargas, A.2
  • 64
    • 22944456598 scopus 로고    scopus 로고
    • Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden. Computer program distributed by the author, available from
    • NYLANDER, J. A. A. 2004. MrModeltest v2. Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden. Computer program distributed by the author, available from http://www.abc.se/~nylander/.
    • (2004) MrModeltest v2
    • Nylander, J.A.A.1
  • 65
    • 39149141072 scopus 로고    scopus 로고
    • AWTY (Are we there yet?): A system for graphical exploration of MCMC convergence in Bayesian phylogenetics
    • NYLANDER, J. A. A., J. C. WILGENBUSCH, D. L. WARREN, AND D. L. SWOFFORD. 2008. AWTY (Are we there yet?): A system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24: 581-583.
    • (2008) Bioinformatics , vol.24 , pp. 581-583
    • Nylander, J.A.A.1    Wilgenbusch, J.C.2    Warren, D.L.3    Swofford, D.L.4
  • 67
    • 33845911998 scopus 로고
    • Chemical and ecological studies in the Cladonia subulata complex in northern Germany (Cladoniaceae, lichenised Ascomycotina)
    • PAUS, S., F. J. A. DANIELS, AND H. T. LUMBSCH. 1993. Chemical and ecological studies in the Cladonia subulata complex in northern Germany (Cladoniaceae, lichenised Ascomycotina). Bibliotheca Lichenologica 53: 191-200.
    • (1993) Bibliotheca Lichenologica , vol.53 , pp. 191-200
    • Paus, S.1    Daniels, F.J.A.2    Lumbsch, H.T.3
  • 69
    • 77952189719 scopus 로고    scopus 로고
    • Phylogenetic and haplotype analyses of four segregates within Cladonia arbuscula s. l
    • PIERCEY-NORMORE, M. D., T. AHTI, AND T. GOWARD. 2010. Phylogenetic and haplotype analyses of four segregates within Cladonia arbuscula s.l. Botany 88: 397-408.
    • (2010) Botany , vol.88 , pp. 397-408
    • Piercey-Normore, M.D.1    Ahti, T.2    Goward, T.3
  • 72
    • 78449292931 scopus 로고    scopus 로고
    • Elucidating the taxonomic rank of Cladonia subulata versus C. rei (Cladoniaceae)
    • PINO-BODAS, R., A. R. BURGAZ, AND M. P. MARTÍN. 2010a. Elucidating the taxonomic rank of Cladonia subulata versus C. rei (Cladoniaceae). Mycotaxon 113: 311-326.
    • (2010) Mycotaxon , vol.113 , pp. 311-326
    • Pino-Bodas, R.1    Burgaz, A.R.2    Martín, M.P.3
  • 74
    • 79959758196 scopus 로고    scopus 로고
    • Insight into the Cladonia convoluta-C. foliacea (Cladoniaceae, Ascomycota) complex and related species, revealed through morphological, biochemical and phylogenetic analyses
    • PINO-BODAS, R., M. P. M ARTÍN, AND A. R. B URGAZ. 2010b. Insight into the Cladonia convoluta-C. foliacea (Cladoniaceae, Ascomycota) complex and related species, revealed through morphological, biochemical and phylogenetic analyses. Systematics and Biodiversity 8: 575-586.
    • (2010) Systematics and Biodiversity , vol.8 , pp. 575-586
    • Pino-Bodas, R.1    Artín, M.P.M.2    Urgaz, A.R.B.3
  • 75
    • 84856458370 scopus 로고    scopus 로고
    • Cladonia subturgida and C. iberica (Cladoniaceae) form a single, morphologically and chemically polymorphic species
    • PINO-BODAS, R., M. P. MARTÍN, AND A. R. BURGAZ. 2012c. Cladonia subturgida and C. iberica (Cladoniaceae) form a single, morphologically and chemically polymorphic species. Mycological Progress 11: 269-278.
    • (2012) Mycological Progress , vol.11 , pp. 269-278
    • Pino-Bodas, R.1    Martín, M.P.2    Burgaz, A.R.3
  • 76
    • 0013648423 scopus 로고
    • Testing nominal species boundaries using gene fl ow statistics-The taxonomy of two hybridizing admiral butterfl ies (Limenitis, Nymphalidae)
    • PORTER, A. H. 1990. Testing nominal species boundaries using gene fl ow statistics-The taxonomy of two hybridizing admiral butterfl ies (Limenitis, Nymphalidae). Systematic Zoology 39: 131-147.
    • (1990) Systematic Zoology , vol.39 , pp. 131-147
    • Porter, A.H.1
  • 77
    • 0038717231 scopus 로고    scopus 로고
    • Phylogeography of Cavernularia hultenii: Evidence of slow genetic drift in a widely disjuntion lichen
    • PRINTZEN, C., E. EKMAN, AND T. TØNSBERG. 2003. Phylogeography of Cavernularia hultenii: Evidence of slow genetic drift in a widely disjuntion lichen. Molecular Ecology 12: 1473-1486.
    • (2003) Molecular Ecology , vol.12 , pp. 1473-1486
    • Printzen, C.1    Ekman, E.2    Tønsberg, T.3
  • 79
    • 0042697667 scopus 로고    scopus 로고
    • The shapes of neutral gene genealogies in two species: Probabilities of monophyly, paraphyly, and polyphyly in a coalescent model
    • ROSENBERG, N. A. 2003. The shapes of neutral gene genealogies in two species: Probabilities of monophyly, paraphyly, and polyphyly in a coalescent model. Evolution 57: 1465-1477.
    • (2003) Evolution , vol.57 , pp. 1465-1477
    • Rosenberg, N.A.1
  • 80
    • 79959632145 scopus 로고    scopus 로고
    • Use of the genealogical sorting index (GSI) to delimitate species boundaries in the Neofusiococcum parvum-Neofusiococcum ribis species complex
    • SAKALIDIS, M. L., G. E. HARDY, AND T. I. BURGESS. 2011. Use of the genealogical sorting index (GSI) to delimitate species boundaries in the Neofusiococcum parvum-Neofusiococcum ribis species complex. Molecular Phylogenetics and Evolution 60: 333-344.
    • (2011) Molecular Phylogenetics and Evolution , vol.60 , pp. 333-344
    • Sakalidis, M.L.1    Hardy, G.E.2    Burgess, T.I.3
  • 81
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • SCHMIDT, H. A., K. STRIMMER, M. VINGRON, AND A. VON HAESELER. 2002. TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 83
    • 39549118233 scopus 로고    scopus 로고
    • Delimiting species in recent radiations
    • SHAFFER, H. B., AND R. C. THOMSON. 2007. Delimiting species in recent radiations. Systematic Biology 56: 896-906.
    • (2007) Systematic Biology , vol.56 , pp. 896-906
    • Shaffer, H.B.1    Thomson, R.C.2
  • 84
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of loglikelihoods with applications to phylogenetic inference
    • SHIMODAIRA, H., AND M. HASEGAWA. 1999. Multiple comparisons of loglikelihoods with applications to phylogenetic inference. Molecular Biology and Evolution 16: 1114-1116.
    • (1999) Molecular Biology and Evolution , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 85
    • 70350291658 scopus 로고    scopus 로고
    • The genus Cladonia in Garajonay National Park, La Gomera, Canary Islands
    • SICILIA, D., C. HERNÁNDEZ-PADRÓN, AND A. R. BURGAZ. 2009. The genus Cladonia in Garajonay National Park, La Gomera, Canary Islands. Cryptogamie. Mycologie 30: 305-316.
    • (2009) Cryptogamie. Mycologie , vol.30 , pp. 305-316
    • Sicilia, D.1    Hernández-Padrón, C.2    Burgaz, A.R.3
  • 87
    • 79955409517 scopus 로고    scopus 로고
    • A phylogenetic analysis of the boreal lichen Mycoblastus sanguinarius (Mycoblastaceae, lichenized Ascomycota) reveals cryptic clades correlated with fatty acid profi les
    • SPRIBILLE, T., B. KLUG, AND H. MAYRHOFER. 2011. A phylogenetic analysis of the boreal lichen Mycoblastus sanguinarius (Mycoblastaceae, lichenized Ascomycota) reveals cryptic clades correlated with fatty acid profi les. Molecular Phylogenetics and Evolution 59: 603-614.
    • (2011) Molecular Phylogenetics and Evolution , vol.59 , pp. 603-614
    • Spribille, T.1    Klug, B.2    Mayrhofer, H.3
  • 88
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum-likelihood-based phylogenetic 1118 analyses with thousands of taxa and mixed models
    • STAMATAKIS, A. 2006. RAxML-VI-HPC: Maximum-likelihood-based phylogenetic 1118 analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 89
    • 0003095729 scopus 로고
    • Cladoniaceae (Lecanorales, Lichenized Ascomycota) in Chile
    • STENROOS, S. 1995. Cladoniaceae (Lecanorales, Lichenized Ascomycota) in Chile. Gayana Botánica 52: 89-131.
    • (1995) Gayana Botánica , vol.52 , pp. 89-131
    • Stenroos, S.1
  • 90
    • 0036056437 scopus 로고    scopus 로고
    • Phylogeny of the genus Cladonia s. lat. (Cladoniaceae, Ascomycetes) inferred from molecular, morphological and chemical data
    • STENROOS, S., J. HYVÖNEN, L. MYLLYS, A. THELL, AND T. AHTI. 2002. Phylogeny of the genus Cladonia s. lat. (Cladoniaceae, Ascomycetes) inferred from molecular, morphological and chemical data. Cladistics 18: 237-278.
    • (2002) Cladistics , vol.18 , pp. 237-278
    • Stenroos, S.1    Hyvönen, J.2    Myllys, L.3    Thell, A.4    Ahti, T.5
  • 93
    • 0034750288 scopus 로고    scopus 로고
    • Phylogenetic relationships and ancient incomplete lineage sorting among cichlid fi shes in Lake Tanganyika as revealed by analysis of the insertion of retroposons
    • TAKAHASHI, K., Y. TERAI, M. NISHIDA, AND N. OKADA. 2001. Phylogenetic relationships and ancient incomplete lineage sorting among cichlid fi shes in Lake Tanganyika as revealed by analysis of the insertion of retroposons. Molecular Biology and Evolution 18: 2057-2066.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 2057-2066
    • Takahashi, K.1    Terai, Y.2    Nishida, M.3    Okada, N.4
  • 95
    • 25444444398 scopus 로고    scopus 로고
    • A new status for the western European taxa of the Cladonia cervicornis group
    • VAN HERK, C. M., AND A. APTROOT. 2003. A new status for the western European taxa of the Cladonia cervicornis group. Bibliotheca Lichenologica 86: 193-203.
    • (2003) Bibliotheca Lichenologica , vol.86 , pp. 193-203
    • van Herk, C.M.1    Aptroot, A.2
  • 97
    • 75349111728 scopus 로고    scopus 로고
    • The taxonomy of the Caloplaca citrina group (Teloschistaceae) in the Black Sea region; with contributions to the cryptic species concept in lichenology
    • VONDRÁK, J., P. Ř ÍHA, U. A RUP, AND U. S ØCHTING. 2009. The taxonomy of the Caloplaca citrina group (Teloschistaceae) in the Black Sea region; with contributions to the cryptic species concept in lichenology. Lichenologist 41: 571-604.
    • (2009) Lichenologist , vol.41 , pp. 571-604
    • Vondrák, J.1    Íha, P.R.2    Rup, U.A.3    Øchting, U.S.4
  • 98
    • 64649104183 scopus 로고    scopus 로고
    • Species delimitation and evolution of metal bioaccumulation in the lichenized Acarospora smaragdula (Ascomycota, Fungi) complex
    • WEDIN, M., M. WESTBERG, A. T. CREWE, A. TEHLER, AND O. W. PURVIS. 2009. Species delimitation and evolution of metal bioaccumulation in the lichenized Acarospora smaragdula (Ascomycota, Fungi) complex. Cladistics 25: 161-172.
    • (2009) Cladistics , vol.25 , pp. 161-172
    • Wedin, M.1    Westberg, M.2    Crewe, A.T.3    Tehler, A.4    Purvis, O.W.5
  • 99
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • WEIR, B. S., AND C. C. COCKERHAM. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 100
    • 0001789226 scopus 로고
    • A new guide to microchemical techniques for the identifi cation of lichen substances
    • WHITE, F. J., AND P. W. JAMES. 1985. A new guide to microchemical techniques for the identifi cation of lichen substances. British Lichen Society Bulletin 75 (supplement): 1-41.
    • (1985) British Lichen Society Bulletin , vol.75 , Issue.SUPPL. , pp. 1-41
    • White, F.J.1    James, P.W.2
  • 101
    • 0000432452 scopus 로고
    • Amplifi cation and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • In M. A. Innis, D. H. Gelfand, J. J. Sninsky and T. J. White [eds.], Academic Press, San Diego, California, USA
    • WHITE, T. J., T. BRUNS, S. LEE, AND J. W. TAYLOR. 1990. Amplifi cation and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In M. A. Innis, D. H. Gelfand, J. J. Sninsky and T. J. White [eds.], PCR protocols: A guide to methods and applications, 315-322. Academic Press, San Diego, California, USA.
    • (1990) PCR protocols: A guide to methods and applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.W.4
  • 102
    • 67349144734 scopus 로고    scopus 로고
    • Reticulate evolution and incomplete lineage sorting among the ponderosa pines
    • WILLYARD, A., R. CRONN, AND A. LISTON. 2009. Reticulate evolution and incomplete lineage sorting among the ponderosa pines. Molecular Phylogenetics and Evolution 52: 498-511.
    • (2009) Molecular Phylogenetics and Evolution , vol.52 , pp. 498-511
    • Willyard, A.1    Cronn, R.2    Liston, A.3
  • 103
    • 41249087858 scopus 로고    scopus 로고
    • The delimitation of Antarctic and bipolar species of neuropogonoid Usnea (Ascomycota, Lecanorales): A cohesion approach of species recognition for Usnea perpusilla complex
    • WIRTZ, N., C. PRINTZEN, AND H. T. LUMBSCH. 2008. The delimitation of Antarctic and bipolar species of neuropogonoid Usnea (Ascomycota, Lecanorales): A cohesion approach of species recognition for Usnea perpusilla complex. Mycological Research 112: 472-484.
    • (2008) Mycological Research , vol.112 , pp. 472-484
    • Wirtz, N.1    Printzen, C.2    Lumbsch, H.T.3
  • 104
    • 33746796214 scopus 로고    scopus 로고
    • Geographic variation in algal partners of Cladonia subtenuis (Cladoniaceae) highlights the dynamic nature of a lichen symbiosis
    • YAHR, R., R. VILGALYS, AND P. T. DEPRIEST. 2006. Geographic variation in algal partners of Cladonia subtenuis (Cladoniaceae) highlights the dynamic nature of a lichen symbiosis. New Phytologist 171: 847-860.
    • (2006) New Phytologist , vol.171 , pp. 847-860
    • Yahr, R.1    Vilgalys, R.2    Depriest, P.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.