A phylogenetic analysis of the boreal lichen Mycoblastus sanguinarius (Mycoblastaceae, lichenized Ascomycota) reveals cryptic clades correlated with fatty acid profiles

Molecular Phylogenetics and Evolution

Volumn 59, Issue 3, 2011, Pages 603-614

  Spribille, Toby ^a   Klug, Barbara ^a   Mayrhofer, Helmut ^a  

^a UNIVERSITY OF GRAZ   (Austria)

Author keywords

Aliphatic compound; Ascomycete; Chemotaxonomy; Cryptic species; Internal transcribed spacer region; Lichen chemistry; Replication licensing factor Mcm7 gene; Translation elongation factor 1 gene

Indexed keywords

FATTY ACID;

ARTICLE; ASCOMYCETES; CLASSIFICATION; GENETICS; LICHENS; METABOLISM; MICROBIOLOGY; PHYLOGENY;

ASCOMYCOTA; FATTY ACIDS; LICHENS; PHYLOGENY;

ASCOMYCOTA; CONIFEROPHYTA; MYCOBLASTACEAE; MYCOBLASTUS; MYCOBLASTUS AFFINIS; MYCOBLASTUS SANGUINARIUS;

EID: 79955409517     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2011.03.021     Document Type: Article

References (67)

1. Ahti T. Lichens of the boreal coniferous zone. Lichen Ecology 1977, 145-181. Academic Press, London. M.R.D. Seaward (Ed.).
2. Anders J. Untersuchungen über Mycoblastus sanguinarius (L.) Norm., M. alpinus (Fr.) Kernst. und M. melinus (Krph.) Hellb. Hedwigia 1928, 68:87-92.
3. Andreev, M.P., Dobrysh, A.A., Golubkova, N.S., Himelbrant, D.E., Kataeva, O.A., Kotlov, Y.V., Makarova, I.I., Titov, A.N., Tolpysheva, T.Y., Urbanavichene, I.N., Urbanavichus, G.P., 2008. Handbook of the lichens of Russia. 10. Nauka, St. Petersburg. 515 pp (in Russian).
4. Argüello A., del Prado R., Cubas P., Crespo A. Parmelina quercina (Parmeliaceae, Lecanorales) includes four phylogenetically supported morphospecies. Biol. J. Linnean Soc. 2007, 91:455-467.
5. Brodo I.M., Sharnoff S.D., Sharnoff S. Lichens of North America 2001, Yale University Press, New Haven, 795 pp.
6. Buschbom J., Mueller G.M. Testing "species-pair" hypotheses: evolutionary processes in the lichen-forming species complex Porpidia flavocoerulescens and Porpidia melinodes. Mol. Biol. Evol. 2006, 23:574-586.
7. Clayden S.R. Chemical divergence of eastern North American and European populations of Arctoparmelia centrifuga and their sympatric usnic acid-deficient chemotypes. Bryologist 1992, 95:1-4.
8. Crespo A., Pérez-Ortega S. Cryptic species and species pairs in lichens: a discussion on the relationship between molecular phylogenies and morphological characters. Anales del Jardín Botánico de Madrid 2009, 66S1:71-81.
9. Crespo A., Molina M.C., Blanco O., Schroeter B., Sancho L.G., Hawksworth D.L. RDNA ITS and β-tubulin gene sequence analyses reveal two monophyletic groups within the cosmopolitan lichen Parmelia saxatilis. Mycological Research 2002, 106:788-795.
10. Culberson C.F. Improved conditions and new data for the identification of lichen products by a standardized thin-layer chromatographic method. J. Chromatogr. 1972, 72:113-125.
11. Culberson C.F. Biogenetic relationships of the lichen substances in the framework of systematics. Bryologist 1986, 89:91-98.
12. Culberson W.L., Culberson C.F. Parallel evolution in the lichen-forming fungi. Science 1973, 180:196-198.
13. Culberson W.L., Culberson C.F. Chemosyndromic variation in lichens. Syst. Bot. 1977, 1:325-339.
14. Culberson C.F., Johnson A. Substitution of methyl tert.-butyl ether for diethyl ether in Standardized thin-layer chromatographic method for lichen products. J. Chromatogr. 1982, 238:438-487.
15. Culberson C.F., Culberson W.L., Johnson A. Does the symbiont alga determine chemotype in lichens?. Mycologia 1985, 77:657-660.
16. Divakar P.K., Figueras G., Hladun N., Crespo A. Molecular phylogenetic studies reveal an undescribed species within the North American concept of Melanelixia glabra (Parmeliaceae). Fungal Divers. 2010, 42:47-55.
17. Excoffier L., Laval G., Schneider S. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinf. Online 2005, 1:47-50.
18. Fehrer J., Slavíkova-Bayerová Š., Orange A. Large genetic divergence of new, morphologically similar species of sterile lichens from Europe (Lepraria, Stereocaulaceae, Ascomycota): concordance of DNA sequence data with secondary metabolites. Cladistics 2008, 24:443-458.
19. Feuerer T., Hawksworth D.L. Biodiversity of lichens, including a world-wide analysis of checklist data based on Takhtajan's floristic regions. Biodiversity and Conservation 2007, 16:85-98.
20. Geml J., Laursen G.A., O'Neill K., Nusbaum H.C., Taylor D.L. Beringian origins and cryptic speciation events in the fly agaric (Amanita muscaria). Mol. Ecol. 2006, 15:225-239.
21. Geml J., Tuloss R.E., Laursen G.A., Sazanova N.A., Taylor D.L. Evidence for strong inter- and intracontinental phylogeographic structure in Amanita muscaria, a wind-dispersed ectomycorrhizal basidiomycete. Mol. Phylogen. Evol. 2008, 48:694-701.
22. Geml J., Kauff F., Brochmann F., Taylor D.L. Surviving climate changes: high genetic diversity and transoceanic gene flow in two arctic-alpine lichens, Flavocetraria cucullata and F. Nivalis (Parmeliaceae, Ascomycota). J. Biogeogr. 2010, 37:1529-1542.
23. Guindon S., Gascuel O. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
24. Hale M.E. Lichen Handbook 1961, Smithsonian Institution, Washington, DC, 178 pp.
25. Hale M.E. A monograph of the lichen genus Parmelia Acharius sensu stricto (Asocmycotina: Parmeliaceae). Smithsonian Contr. Bot. 1987, 66:1-55.
26. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41:95-98.
27. Haugan R., Timdal E. Tephromela perlata and T. talayana, with notes on the T. aglaea-complex. Graphis Scripta 1994, 6:17-26.
28. Hawksworth D.L. Lichen chemotaxonomy. Lichenology: Progress and Problems 1976, 139-184. Academic Press, London. D.H. Brown, D.L. Hawksworth, R.H. Bailey (Eds.).
29. Hawksworth D.L. The fungal dimension of biodiversity: magnitude, significance, and conservation. Mycological Research 1991, 95:641-655.
30. Hawksworth D.L. The magnitude of fungal diversity: the 1.5 million species estimate revisited. Mycol. Res. 2001, 105:1422-1432.
31. Hawksworth D.L., Rossman A.Y. Where are all the undescribed fungi?. Phytopathology 1997, 87:888-891.
32. Hudson R.R., Slatkin M., Maddison W.P. Estimation of levels of gene flow from DNA sequence data. Genetics 1992, 132:583-589.
33. Huelsenbeck J.P., Ronquist F. MRBAYES, Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755.
34. Huneck S. New results on the chemistry of lichen substances. Prog. Chem. Organic Nat. Prod. 2001, 81:1-313.
35. Huneck S., Schmidt J. Neue Flechtenanalysen aus verschiedenen Verwandtschaftskreisen. Flechten Follmann. Contributions to lichenology in honour of Gerhard Follmann 1995, 27-41. Botanical Institute, University of Cologne, Cologne. F.J.A. Daniëls, M. Schulz, J. Peine (Eds.).
36. Ingolfsdottir K., Hjalmarsdottir M.A., Sigurdsson A., Gudjonsdottir G.A., Brynjolfsdottir A., Steingrimsson O. In vitro susceptibility of Helicobacter pylori to protolichesterinic acid from the lichen Cetraria islandica. Antimicrob. Agents Chemother. 1997, 41:215-217.
37. James P.W., Watson M.F. Mycoblastus. The Lichens of Great Britain and Ireland 2009, 615-618. British Lichen Society, Natural History Museum, London. C.W. Smith, A. Aptroot, B.J. Coppins, A. Fletcher, O.L. Gilbert, P.W. James, P.A. Wolseley (Eds.).
38. Kantvilas G. The genus Mycoblastus in the cool temperate Southern Hemisphere, with special reference to Tasmania. Lichenologist 2009, 41:151-178.
39. Kearsey S.E., Labib K. MCM proteins: evolution, properties, and role in DNA replication. Biochim. Biophys. Acta 1998, 1398:113-136.
40. Kroken S., Taylor J.W. A gene genealogical approach to recognize phylogenetic species boundaries in the lichenized fungus Letharia. Mycologia 2001, 93:38-53.
41. Lawrey J.D. Vulpinic and pinastric acids as lichen antiherbivore compounds: contrary evidence. Bryologist 1983, 86:365-369.
42. Leavitt S.D., Johnson L., St.Clair L.L. Species delimitation and evolution in morphologically and chemically diverse communities of the lichen-forming genus Xanthoparmelia (Parmeliaceae, Ascomycota) in western North America. Am. J. Bot. 2011, 98:1-14.
43. Leuckert C., Poelt J. Studien über die Lecanora rupicola-Gruppe in Europa (Lecanoraceae). Nova Hedwigia 1989, 49:121-167.
44. Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
45. Linnaeus, C., 1753. Species plantarum, exhibentes plantas rite cognitas ad genera relatas, cum differentiis specificis, nominibus trivialibus, synonymis selectis, locis natalibus, secundum systema sexuale digestas. Holmiae, 1231 pp.
46. Lumbsch H.T. The use of metabolic data in lichenology at the species and subspecific levels. Lichenologist 1998, 30:357-367.
47. Meyer B., Printzen C. Proposal for a standardized nomenclature and characterization of insoluble lichen pigments. Lichenologist 2000, 32:571-583.
48. Nei M., Kumar S. Molecular Evolution and Phylogenetics 2000, Oxford University Press, USA, 333 p.
49. Nei M., Li W.H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 1979, 76:5269-5273.
50. Nylander, W., 1890. Lichenes japoniae. Accedunt observationibus lichenes insulae Labuan. P. Schmidt, Paris, 122 pp.
51. Nylander J.A., Wilgenbusch J.C., Warren D.L., Swofford D.L. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 2007, 24:581-583.
52. Page R.D.M. Treeview: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 1996, 12:357-358.
53. Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
54. Printzen C. Uncharted terrain: the phylogeography of arctic and boreal lichens. Plant Ecol. Div. 2008, 1:265-271.
55. Rehner S.A., Buckley E. A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 2005, 97:84-98.
56. Schauer T. Die Flechtengattung Mycoblastus in Mitteleuropa. Nova Hedwigia 1964, 8:301-310.
57. Schmitt I., Crespo A., Divakar P.K., Fankhauser J., Herman-Sackett E., Kalb K., Nelson M.P., Nelson N.A., Rivas-Plata E., Schimp A.D., Widhelm T., Lumbsch H.T. New primers for promising single copy genes in fungal phylogenetics and systematics. Persoonia 2009, 23:35-40.
58. Spribille T., Pérez-Ortega S., Tønsberg T., Schirokauer D. Lichens and lichenicolous fungi of the Klondike Gold Rush National Historic Park, Alaska, in a global biodiversity context. Bryologist 2010, 113:439-515.
59. Swofford D.L. PAUP*. Phylogenetic Analysis Using Parsimony. (*and Other Methods). Version 4 2002, Sinauer Associates, Sunderland, Massachusetts.
60. Talavera G., Castresana J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst. Biol. 2007, 56:564-577.
61. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
62. Thompson J.D., Higgins D.G., Gibson T.J. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 1994, 22:4673-4680.
63. Tønsberg T. The sorediate and isidiate, corticolous, crustose lichens in Norway. Sommerfeltia 1992, 14:1-331.
64. Türk A.Ö., Yi{dotless}lmaz M., Ki{dotless}vanç M., Türk H. The antimicrobial activity of extracts of the lichen Cetraria aculeata and its protolichesterinic acid constituent. Zeitschr. Naturforsch. 2003, 58c:850-854.
65. Wainio E. Lichenes in viciniis stationis hibernae expeditionis Vegae prope pagum Pitlekai in Sibiria septentrionali a Dre. E. Almquist collecti. Praefationem scripsit F. Almquist. Arkiv Botanik 1909, 8:11-175.
66. White T.J., Bruns T., Lee S., Taylor J.W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications 1990, 315-322. Academic Press, Inc., New York. M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.).
67. Xia X., Xie Z. DAMBE: data analysis in molecular biology and evolution. J. Heredity 2001, 92:371-373.