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Volumn 8, Issue 4, 2013, Pages

A Prognosis Classifier for Breast Cancer Based on Conserved Gene Regulation between Mammary Gland Development and Tumorigenesis: A Multiscale Statistical Model

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ADULT; ARTICLE; BREAST CANCER; BREAST CARCINOGENESIS; BREAST DEVELOPMENT; CANCER CLASSIFICATION; CANCER GRADING; CANCER PROGNOSIS; DEVELOPMENTAL GENE; GENE EXPRESSION REGULATION; GENETIC ASSOCIATION; GENETIC CONSERVATION; GENETIC REGULATION; HUMAN; HUMAN TISSUE; MAJOR CLINICAL STUDY; METASTASIS; MOLECULAR DYNAMICS; OUTCOME ASSESSMENT; PRIMARY TUMOR; PRINCIPAL COMPONENT ANALYSIS; STATISTICAL MODEL; TUMOR GENE; TUMOR VOLUME;

EID: 84875664073     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0060131     Document Type: Article
Times cited : (3)

References (50)
  • 1
    • 0037411179 scopus 로고    scopus 로고
    • Transcriptional regulators in mammary gland development and cancer
    • Visvader JE, Lindeman GJ, (2003) Transcriptional regulators in mammary gland development and cancer. Int J Biochem Cell Biol 35(7): 1034-1051.
    • (2003) Int J Biochem Cell Biol , vol.35 , Issue.7 , pp. 1034-1051
    • Visvader, J.E.1    Lindeman, G.J.2
  • 2
    • 18844483267 scopus 로고    scopus 로고
    • The promise of microarrays in the management and treatment of breast cancer
    • Chang JC, Hilsenbeck SG, Fuqua SA, (2005) The promise of microarrays in the management and treatment of breast cancer. Breast Cancer Res 7(3): 100-104.
    • (2005) Breast Cancer Res , vol.7 , Issue.3 , pp. 100-104
    • Chang, J.C.1    Hilsenbeck, S.G.2    Fuqua, S.A.3
  • 3
    • 81555199640 scopus 로고    scopus 로고
    • Microarrays in the 2010s: the contribution of microarray-based gene expression profiling to breast cancer classification, prognostication and prediction
    • Colombo PE, Milanezi F, Weigelt B, Reis-Filho JS, (2011) Microarrays in the 2010s: the contribution of microarray-based gene expression profiling to breast cancer classification, prognostication and prediction. Breast Cancer Res 13(3): 212.
    • (2011) Breast Cancer Res , vol.13 , Issue.3 , pp. 212
    • Colombo, P.E.1    Milanezi, F.2    Weigelt, B.3    Reis-Filho, J.S.4
  • 4
    • 70350474980 scopus 로고    scopus 로고
    • Gene expression profiling: decoding breast cancer
    • de Snoo F, Bender R, Glas A, Rutgers E, (2009) Gene expression profiling: decoding breast cancer. Surg Oncol 18(4): 366-378.
    • (2009) Surg Oncol , vol.18 , Issue.4 , pp. 366-378
    • de Snoo, F.1    Bender, R.2    Glas, A.3    Rutgers, E.4
  • 5
    • 77952114407 scopus 로고    scopus 로고
    • Development of candidate genomic markers to select breast cancer patients for dasatinib therapy
    • Moulder S, Yan K, Huang F, Hess KR, Liedtke C, et al. (2010) Development of candidate genomic markers to select breast cancer patients for dasatinib therapy. Mol Cancer Ther 9(5): 1120-1127.
    • (2010) Mol Cancer Ther , vol.9 , Issue.5 , pp. 1120-1127
    • Moulder, S.1    Yan, K.2    Huang, F.3    Hess, K.R.4    Liedtke, C.5
  • 6
    • 78649825336 scopus 로고    scopus 로고
    • Current and emerging biomarkers in breast cancer: prognosis and prediction
    • Weigel MT, Dowsett M, (2010) Current and emerging biomarkers in breast cancer: prognosis and prediction. Endocr Relat Cancer 17(4): R245-262.
    • (2010) Endocr Relat Cancer , vol.17 , Issue.4
    • Weigel, M.T.1    Dowsett, M.2
  • 7
    • 0037137519 scopus 로고    scopus 로고
    • A gene-expression signature as a predictor of survival in breast cancer
    • van de Vijver MJ, He YD, van't Veer LJ, Dai H, Hart AA, et al. (2002) A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med 347(25): 1999-2009.
    • (2002) N Engl J Med , vol.347 , Issue.25 , pp. 1999-2009
    • van de Vijver, M.J.1    He, Y.D.2    van't Veer, L.J.3    Dai, H.4    Hart, A.A.5
  • 8
    • 18244409687 scopus 로고    scopus 로고
    • Gene expression profiling predicts clinical outcome of breast cancer
    • van 't Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AA, et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature 415(6871): 530-536.
    • (2002) Nature , vol.415 , Issue.6871 , pp. 530-536
    • van 't Veer, L.J.1    Dai, H.2    van de Vijver, M.J.3    He, Y.D.4    Hart, A.A.5
  • 9
    • 49649114805 scopus 로고    scopus 로고
    • Analysis of the MammaPrint breast cancer assay in a predominantly postmenopausal cohort
    • Wittner BS, Sgroi DC, Ryan PD, Bruinsma TJ, Glas AM, et al. (2008) Analysis of the MammaPrint breast cancer assay in a predominantly postmenopausal cohort. Clin Cancer Res 14(10): 2988-2993.
    • (2008) Clin Cancer Res , vol.14 , Issue.10 , pp. 2988-2993
    • Wittner, B.S.1    Sgroi, D.C.2    Ryan, P.D.3    Bruinsma, T.J.4    Glas, A.M.5
  • 10
    • 77950859892 scopus 로고    scopus 로고
    • The predictive value of the 70-gene signature for adjuvant chemotherapy in early breast cancer
    • Knauer M, Mook S, Rutgers EJ, Bender RA, Hauptmann M, et al. (2010) The predictive value of the 70-gene signature for adjuvant chemotherapy in early breast cancer. Breast Cancer Res Treat 120(3): 655-661.
    • (2010) Breast Cancer Res Treat , vol.120 , Issue.3 , pp. 655-661
    • Knauer, M.1    Mook, S.2    Rutgers, E.J.3    Bender, R.A.4    Hauptmann, M.5
  • 11
    • 33144462268 scopus 로고    scopus 로고
    • Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis
    • Sotiriou C, Wirapati P, Loi S, Harris A, Fox S, et al. (2006) Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis. J Natl Cancer Inst 98(4): 262-272.
    • (2006) J Natl Cancer Inst , vol.98 , Issue.4 , pp. 262-272
    • Sotiriou, C.1    Wirapati, P.2    Loi, S.3    Harris, A.4    Fox, S.5
  • 12
    • 67650327607 scopus 로고    scopus 로고
    • Genomic grade index is associated with response to chemotherapy in patients with breast cancer
    • Liedtke C, Hatzis C, Symmans WF, Desmedt C, Haibe-Kains B, et al. (2009) Genomic grade index is associated with response to chemotherapy in patients with breast cancer. J Clin Oncol 27(19): 3185-3191.
    • (2009) J Clin Oncol , vol.27 , Issue.19 , pp. 3185-3191
    • Liedtke, C.1    Hatzis, C.2    Symmans, W.F.3    Desmedt, C.4    Haibe-Kains, B.5
  • 13
    • 2942578063 scopus 로고    scopus 로고
    • A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen
    • Ma XJ, Wang Z, Ryan PD, Isakoff SJ, Barmettler A, et al. (2004) A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen. Cancer Cell 5(6): 607-616.
    • (2004) Cancer Cell , vol.5 , Issue.6 , pp. 607-616
    • Ma, X.J.1    Wang, Z.2    Ryan, P.D.3    Isakoff, S.J.4    Barmettler, A.5
  • 14
    • 52049095087 scopus 로고    scopus 로고
    • A five-gene molecular grade index and HOXB13:IL17BR are complementary prognostic factors in early stage breast cancer
    • Ma XJ, Salunga R, Dahiya S, Wang W, Carney E, et al. (2008) A five-gene molecular grade index and HOXB13:IL17BR are complementary prognostic factors in early stage breast cancer. Clin Cancer Res 14(9): 2601-2608.
    • (2008) Clin Cancer Res , vol.14 , Issue.9 , pp. 2601-2608
    • Ma, X.J.1    Salunga, R.2    Dahiya, S.3    Wang, W.4    Carney, E.5
  • 17
    • 79954524706 scopus 로고    scopus 로고
    • Molecular predictors of response to therapy for breast cancer
    • Galanina N, Bossuyt V, Harris LN, (2011) Molecular predictors of response to therapy for breast cancer. Cancer J 17(2): 96-103.
    • (2011) Cancer J , vol.17 , Issue.2 , pp. 96-103
    • Galanina, N.1    Bossuyt, V.2    Harris, L.N.3
  • 18
    • 84964144600 scopus 로고
    • New advances in the chemistry and biology of origanized growth
    • Needham J, (1936) New advances in the chemistry and biology of origanized growth. Proc R Soc Lond B Biol Sci 29: 1577-1626.
    • (1936) Proc R Soc Lond B Biol Sci , vol.29 , pp. 1577-1626
    • Needham, J.1
  • 19
    • 0011163474 scopus 로고
    • Cancer and the theory of organizers
    • Waddington C (1935) Cancer and the theory of organizers. Nature 135(606-608).
    • (1935) Nature , vol.135 , Issue.606-608
    • Waddington, C.1
  • 21
    • 8444220513 scopus 로고    scopus 로고
    • Signaling pathways in intestinal development and cancer
    • Sancho E, Batlle E, Clevers H, (2004) Signaling pathways in intestinal development and cancer. Annu Rev Cell Dev Biol 20: 695-723.
    • (2004) Annu Rev Cell Dev Biol , vol.20 , pp. 695-723
    • Sancho, E.1    Batlle, E.2    Clevers, H.3
  • 22
    • 0032853348 scopus 로고    scopus 로고
    • Relation of the slow growth phenotype to neoplastic transformation: possible significance for human cancer
    • Chow M, Rubin H, (1999) Relation of the slow growth phenotype to neoplastic transformation: possible significance for human cancer. In Vitro Cell Dev Biol Anim 35(8): 449-458.
    • (1999) In Vitro Cell Dev Biol Anim , vol.35 , Issue.8 , pp. 449-458
    • Chow, M.1    Rubin, H.2
  • 23
    • 1842831283 scopus 로고    scopus 로고
    • Conserved mechanisms across development and tumorigenesis revealed by a mouse development perspective of human cancers
    • Kho AT, Zhao Q, Cai Z, Butte AJ, Kim JY, et al. (2004) Conserved mechanisms across development and tumorigenesis revealed by a mouse development perspective of human cancers. Genes Dev 18(6): 629-640.
    • (2004) Genes Dev , vol.18 , Issue.6 , pp. 629-640
    • Kho, A.T.1    Zhao, Q.2    Cai, Z.3    Butte, A.J.4    Kim, J.Y.5
  • 24
    • 25444491191 scopus 로고    scopus 로고
    • Overlapping gene expression in fetal mouse intestine development and human colorectal cancer
    • Hu M, Shivdasani RA, (2005) Overlapping gene expression in fetal mouse intestine development and human colorectal cancer. Cancer Res 65(19): 8715-8722.
    • (2005) Cancer Res , vol.65 , Issue.19 , pp. 8715-8722
    • Hu, M.1    Shivdasani, R.A.2
  • 25
    • 0036369222 scopus 로고    scopus 로고
    • Establishing a framework for the functional mammary gland: from endocrinology to morphology
    • 14: Garcia-Caballero T,et al. Increased expression of growt..[PMID:10963047]Related Articles, Links
    • Hovey RC, Trott JF, Vonderhaar BK (2002) Establishing a framework for the functional mammary gland: from endocrinology to morphology. J Mammary Gland Biol Neoplasia 7(1): 17-38. 14: Garcia-Caballero T,et al. Increased expression of growt..[PMID:10963047]Related Articles, Links.
    • (2002) J Mammary Gland Biol Neoplasia , vol.7 , Issue.1 , pp. 17-38
    • Hovey, R.C.1    Trott, J.F.2    Vonderhaar, B.K.3
  • 26
    • 0033110672 scopus 로고    scopus 로고
    • Growth factors, apoptosis, and survival of mammary epithelial cells
    • Rosfjord EC, Dickson RB, (1999) Growth factors, apoptosis, and survival of mammary epithelial cells. J Mammary Gland Biol Neoplasia 4(2): 229-237.
    • (1999) J Mammary Gland Biol Neoplasia , vol.4 , Issue.2 , pp. 229-237
    • Rosfjord, E.C.1    Dickson, R.B.2
  • 27
    • 0036127284 scopus 로고    scopus 로고
    • Steroid hormone mimics: molecular mechanisms of cell growth and apoptosis in normal and malignant mammary epithelial cells
    • Rahman KM, Sarkar FH, (2002) Steroid hormone mimics: molecular mechanisms of cell growth and apoptosis in normal and malignant mammary epithelial cells. J Steroid Biochem Mol Biol 80(2): 191-201.
    • (2002) J Steroid Biochem Mol Biol , vol.80 , Issue.2 , pp. 191-201
    • Rahman, K.M.1    Sarkar, F.H.2
  • 28
    • 0036638507 scopus 로고    scopus 로고
    • Transcription factor regulation in mammary epithelial cells
    • Groner B, (2002) Transcription factor regulation in mammary epithelial cells. Domest Anim Endocrinol 23(1-2): 25-32.
    • (2002) Domest Anim Endocrinol , vol.23 , Issue.1-2 , pp. 25-32
    • Groner, B.1
  • 29
    • 0034751220 scopus 로고    scopus 로고
    • Estrogen receptor and breast cancer
    • Sommer S, Fuqua SA, (2001) Estrogen receptor and breast cancer. Semin Cancer Biol 11(5): 339-352.
    • (2001) Semin Cancer Biol , vol.11 , Issue.5 , pp. 339-352
    • Sommer, S.1    Fuqua, S.A.2
  • 30
    • 33846815517 scopus 로고    scopus 로고
    • Significance, detection and markers of disseminated breast cancer cells
    • Lacroix M, (2006) Significance, detection and markers of disseminated breast cancer cells. Endocr Relat Cancer 13(4): 1033-1067.
    • (2006) Endocr Relat Cancer , vol.13 , Issue.4 , pp. 1033-1067
    • Lacroix, M.1
  • 31
    • 4143098703 scopus 로고    scopus 로고
    • Functional development of the mammary gland: use of expression profiling and trajectory clustering to reveal changes in gene expression during pregnancy, lactation, and involution
    • Rudolph MC, McManaman JL, Hunter L, Phang T, Neville MC, (2003) Functional development of the mammary gland: use of expression profiling and trajectory clustering to reveal changes in gene expression during pregnancy, lactation, and involution. J Mammary Gland Biol Neoplasia 8(3): 287-307.
    • (2003) J Mammary Gland Biol Neoplasia , vol.8 , Issue.3 , pp. 287-307
    • Rudolph, M.C.1    McManaman, J.L.2    Hunter, L.3    Phang, T.4    Neville, M.C.5
  • 35
    • 0037076342 scopus 로고    scopus 로고
    • Initiating oncogenic event determines gene-expression patterns of human breast cancer models
    • Desai KV, Xiao N, Wang W, Gangi L, Greene J, et al. (2002) Initiating oncogenic event determines gene-expression patterns of human breast cancer models. Proc Natl Acad Sci U S A 99(10): 6967-6972.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , Issue.10 , pp. 6967-6972
    • Desai, K.V.1    Xiao, N.2    Wang, W.3    Gangi, L.4    Greene, J.5
  • 37
    • 33746428637 scopus 로고    scopus 로고
    • Predicting survival within the lung cancer histopathological hierarchy using a multi-scale genomic model of development
    • Liu H, Kho AT, Kohane IS, Sun Y, (2006) Predicting survival within the lung cancer histopathological hierarchy using a multi-scale genomic model of development. PLoS Med 3(7): e232.
    • (2006) PLoS Med , vol.3 , Issue.7
    • Liu, H.1    Kho, A.T.2    Kohane, I.S.3    Sun, Y.4
  • 38
    • 0142151074 scopus 로고    scopus 로고
    • Non-small-cell lung cancer molecular signatures recapitulate lung developmental pathways
    • Borczuk AC, Gorenstein L, Walter KL, Assaad AA, Wang L, et al. (2003) Non-small-cell lung cancer molecular signatures recapitulate lung developmental pathways. Am J Pathol 163(5): 1949-1960.
    • (2003) Am J Pathol , vol.163 , Issue.5 , pp. 1949-1960
    • Borczuk, A.C.1    Gorenstein, L.2    Walter, K.L.3    Assaad, A.A.4    Wang, L.5
  • 39
    • 18844384642 scopus 로고    scopus 로고
    • Global gene repression in hepatocellular carcinoma and fetal liver, and suppression of dudulin-2 mRNA as a possible marker for the cirrhosis-to-tumor transition
    • Coulouarn C, Derambure C, Lefebvre G, Daveau R, Hiron M, et al. (2005) Global gene repression in hepatocellular carcinoma and fetal liver, and suppression of dudulin-2 mRNA as a possible marker for the cirrhosis-to-tumor transition. J Hepatol 42(6): 860-869.
    • (2005) J Hepatol , vol.42 , Issue.6 , pp. 860-869
    • Coulouarn, C.1    Derambure, C.2    Lefebvre, G.3    Daveau, R.4    Hiron, M.5
  • 40
    • 16844384340 scopus 로고    scopus 로고
    • The future of breast cancer: the role of prognostic factors
    • Gradishar WJ, (2005) The future of breast cancer: the role of prognostic factors. Breast Cancer Res Treat 89Suppl 1: S17-26.
    • (2005) Breast Cancer Res Treat , vol.89
    • Gradishar, W.J.1
  • 41
    • 31444453012 scopus 로고    scopus 로고
    • Controversies in the therapy of early stage breast cancer
    • Cianfrocca M, Gradishar WJ, (2005) Controversies in the therapy of early stage breast cancer. Oncologist 10(10): 766-779.
    • (2005) Oncologist , vol.10 , Issue.10 , pp. 766-779
    • Cianfrocca, M.1    Gradishar, W.J.2
  • 42
    • 0037478605 scopus 로고    scopus 로고
    • Repeated observation of breast tumor subtypes in independent gene expression data sets
    • Sorlie T, Tibshirani R, Parker J, Hastie T, Marron JS, et al. (2003) Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc Natl Acad Sci U S A 100(14): 8418-8423.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , Issue.14 , pp. 8418-8423
    • Sorlie, T.1    Tibshirani, R.2    Parker, J.3    Hastie, T.4    Marron, J.S.5
  • 43
    • 0035845511 scopus 로고    scopus 로고
    • Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
    • Sorlie T, Perou CM, Tibshirani R, Aas T, Geisler S, et al. (2001) Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc Natl Acad Sci U S A 98(19): 10869-10874.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , Issue.19 , pp. 10869-10874
    • Sorlie, T.1    Perou, C.M.2    Tibshirani, R.3    Aas, T.4    Geisler, S.5
  • 44
    • 13844250828 scopus 로고    scopus 로고
    • Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
    • Pollack JR, Sorlie T, Perou CM, Rees CA, Jeffrey SS, et al. (2002) Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc Natl Acad Sci U S A 99(20): 12963-12968.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , Issue.20 , pp. 12963-12968
    • Pollack, J.R.1    Sorlie, T.2    Perou, C.M.3    Rees, C.A.4    Jeffrey, S.S.5
  • 45
    • 33646874546 scopus 로고    scopus 로고
    • The molecular portraits of breast tumors are conserved across microarray platforms
    • Hu Z, Fan C, Oh DS, Marron JS, He X, et al. (2006) The molecular portraits of breast tumors are conserved across microarray platforms. BMC Genomics 7: 96.
    • (2006) BMC Genomics , vol.7 , pp. 96
    • Hu, Z.1    Fan, C.2    Oh, D.S.3    Marron, J.S.4    He, X.5
  • 47
    • 1542294200 scopus 로고    scopus 로고
    • Gene expression profiling of mammary gland development reveals putative roles for death receptors and immune mediators in post-lactational regression
    • Clarkson RW, Wayland MT, Lee J, Freeman T, Watson CJ, (2004) Gene expression profiling of mammary gland development reveals putative roles for death receptors and immune mediators in post-lactational regression. Breast Cancer Res 6(2): R92-109.
    • (2004) Breast Cancer Res , vol.6 , Issue.2 , pp. 92-109
    • Clarkson, R.W.1    Wayland, M.T.2    Lee, J.3    Freeman, T.4    Watson, C.J.5
  • 48
    • 85047686481 scopus 로고    scopus 로고
    • Functional microarray analysis of mammary organogenesis reveals a developmental role in adaptive thermogenesis
    • Master SR, Hartman JL, D'Cruz CM, Moody SE, Keiper EA, et al. (2002) Functional microarray analysis of mammary organogenesis reveals a developmental role in adaptive thermogenesis. Mol Endocrinol 16(6): 1185-1203.
    • (2002) Mol Endocrinol , vol.16 , Issue.6 , pp. 1185-1203
    • Master, S.R.1    Hartman, J.L.2    D'Cruz, C.M.3    Moody, S.E.4    Keiper, E.A.5
  • 49
    • 1542354246 scopus 로고    scopus 로고
    • Involution of the mouse mammary gland is associated with an immune cascade and an acute-phase response, involving LBP, CD14 and STAT3
    • Stein T, Morris JS, Davies CR, Weber-Hall SJ, Duffy MA, et al. (2004) Involution of the mouse mammary gland is associated with an immune cascade and an acute-phase response, involving LBP, CD14 and STAT3. Breast Cancer Res 6(2): R75-91.
    • (2004) Breast Cancer Res , vol.6 , Issue.2
    • Stein, T.1    Morris, J.S.2    Davies, C.R.3    Weber-Hall, S.J.4    Duffy, M.A.5
  • 50
    • 0036069214 scopus 로고    scopus 로고
    • Interactive exploration of microarray gene expression patterns in a reduced dimensional space
    • Misra J, Schmitt W, Hwang D, Hsiao LL, Gullans S, et al. (2002) Interactive exploration of microarray gene expression patterns in a reduced dimensional space. Genome Res 12(7): 1112-1120.
    • (2002) Genome Res , vol.12 , Issue.7 , pp. 1112-1120
    • Misra, J.1    Schmitt, W.2    Hwang, D.3    Hsiao, L.L.4    Gullans, S.5


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