Validation of candidate gene markers for marker-assisted selection of potato cultivars with improved tuber quality

Theoretical and Applied Genetics

Volumn 126, Issue 4, 2013, Pages 1039-1052

  Li, Li ^a,e   Tacke, Eckhard ^b   Hofferbert, Hans Reinhardt ^c   Lübeck, Jens ^d   Strahwald, Josef ^d   Draffehn, Astrid M ^a   Walkemeier, Birgit ^a   Gebhardt, Christiane ^a  

^a MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

^b Bioplant GmbH   (Germany)

^c Böhm Nordkartoffel Agrarproduktion OHG   (Germany)

^d Zuchtstation Windeby   (Germany)

^e NORTHEAST FORESTRY UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CLONING; COLD STORAGE; COLOR; FOOD PROCESSING; GLUCOSE; PLANTS (BOTANY); POLYMERASE CHAIN REACTION; QUALITY CONTROL; STARCH; TUBES (COMPONENTS);

ADPGLUCOSE PYROPHOSPHORYLASE; ASSOCIATION MAPPING; CARBOHYDRATE METABOLISM; MARKER-ASSISTED SELECTION; NATURAL VARIATION; STARCH DEGRADATION; STARCH PHOSPHORYLASE; TETRAPLOID BREEDINGS;

GENES;

SOLANUM TUBEROSUM;

EID: 84875412122     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-012-2035-z     Document Type: Article

References (34)

1. Bonierbale MW, Plaisted RL, Tanksley SD (1993) A test of the maximum heterozygosity hypothesis using molecular markers in tetraploid potatoes. Theor Appl Genet 86: 481-491.
2. Brown J, Mackay GR, Bain H, Griffith DW, Allison MJ (1990) The processing potential of tubers of the cultivated potato, Solanum tuberosum L., after storage at low temperatures. 2. Sugar concentration. Potato Res 33: 219-227.
3. Chen X, Salamini F, Gebhardt C (2001) A potato molecular-function map for carbohydrate metabolism and transport. Theor Appl Genet 102: 284-295.
4. Douches D, Freyre R (1994) Identification of genetic factors influencing chip color in diploid potato (Solanum spp.). Am J Pot Res 71: 581-590.
5. Draffehn A, Meller S, Li L, Gebhardt C (2010) Natural diversity of potato (Solanum tuberosum) invertases. BMC Plant Biol 10: 271.
6. Freyre R, Douches DS (1994) Development of a model for marker-assisted selection of specific gravity in diploid potato across environments. Crop Sci 34: 1361-1368.
7. Gebhardt C, Ritter E, Barone A, Debener T, Walkemeier B, Schachtschabel U, Kaufmann H, Thompson RD, Bonierbale MW, Ganal MW, Tanksley SD, Salamini F (1991) RFLP maps of potato and their alignment with the homoeologous tomato genome. Theor Appl Genet 83: 49-57.
8. Gebhardt C, Menendez C, Chen X, Li L, Schäfer-Pregl R, Salamini F (2005) Genomic approaches for the improvement of tuber quality traits in potato. Acta Hort 684: 85-92.
9. Hayes RJ, Thill CA (2002) Selection for cold chipping genotypes from three early generations in a potato breeding program. Euphytica 128: 353-362.
10. Isherwood FA (1973) Starch-sugar interconversion in Solanum tuberosum. Phytochemistry 12: 2579-2591.
11. Kirkman MA (2007) Global markets for processed potato products. In: Vreugdenhil D, Bradshaw J, Gebhardt C, Govers F, Mackerron DKL, Taylor MA, Ross HA (eds) Potato Biology and Biotechnology. Advances and Perspectives. Elsevier Science B. V, Amsterdam, pp 27-44.
12. Li L, Strahwald J, Hofferbert HR, Lubeck J, Tacke E, Junghans H, Wunder J, Gebhardt C (2005) DNA variation at the invertase locus invGE/GF is associated with tuber quality traits in populations of potato breeding clones. Genetics 170: 813-821.
13. Li L, Paulo MJ, Strahwald J, Lübeck J, Hofferbert HR, Tacke E, Junghans H, Wunder J, Draffehn A, van Eeuwijk F, Gebhardt C (2008) Natural DNA variation at candidate loci is associated with potato chip color, tuber starch content, yield and starch yield. Theor Appl Genet 116: 1167-1181.
14. Li L, Paulo MJ, van Eeuwijk F, Gebhardt C (2010) Statistical epistasis between candidate gene alleles for complex tuber traits in an association mapping population of tetraploid potato. Theor Appl Genet 121: 1303-1310.
15. Mackay GR, Brown J, Torrance CJW (1990) The processing potential of tubers of the cultivated potato, Solanum tuberosum L., after storage at low temperature. 1. Fry colour. Potato Res 33: 211-218.
16. Menendez CM, Ritter E, Schäfer-Pregl R, Walkemeier B, Kalde A, Salamini F, Gebhardt C (2002) Cold sweetening in diploid potato: mapping quantitative trait loci and candidate genes. Genetics 162: 1423-1434.
17. Milbourne D, Pande B, Bryan GJ (2007) Potato. In: Kole C (ed) Genome mapping and molecular breeding in plants, vol 3., Pulses, sugar and tuber crops SpringerBerlin, Heidelberg, pp 205-236.
18. Millett B, Bradeen J (2007) Development of allele-specific PCR and RT-PCR assays for clustered resistance genes using a potato late blight resistance transgene as a model. Theor Appl Genet 114: 501-513.
19. Müller-Röber B, Kossmann J, Hannah LC, Willmitzer L, Sonnewald U (1990) Only one of two different ADPglucose pyrophosphorylase genes from potato responds strongly to elevated levels of sucrose. Mol Gen Genet 224: 136-146.
20. Nakata PA, Greene TW, Anderson JM, Smith-White BJ, Okita TW, Preiss J (1991) Comparison of the primary sequences of two potato tuber ADP-glucose pyrophosphorylase subunits. Plant Mol Biol 17: 1089-1093.
21. Okimoto R, Dodgson JB (1996) Improved PCR amplification of multiple specific alleles (PAMSA) using internally mismatched primers. Biotechniques 21: 20-22, 24, 26.
22. Okita TW, Nakata PA, Anderson JM, Sowokinos J, Morell M, Preiss J (1990) The subunit structure of potato tuber ADPglucose pyrophosphorylase. Plant Physiol 93: 785-790.
23. Orita M, Suzuki Y, Sekiya T, Hayashi K (1989) Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction. Genomics 5: 874-879.
24. Ortega F, Lopez-Vizcon C (2012) Application of molecular marker-assisted selection (MAS) for disease resistance in a practical potato breeding programme. Potato Res 55: 1-13.
25. PGSC (2011) Genome sequence and analysis of the tuber crop potato. Nature 475: 189-195.
26. Rizza M, Vilaró F, Torres D, Maeso D (2006) Detection of PVY extreme resistance genes in potato germplasm from the uruguayan breeding program. Am J Pot Res 83: 297-304.
27. Schäfer-Pregl R, Ritter E, Concilio L, Hesselbach J, Lovatti L, Walkemeier B, Thelen H, Salamini F, Gebhardt C (1998) Analysis of quantitative trait loci (QTLs) and quantitative trait alleles (QTAs) for potato tuber yield and starch content. Theor Appl Genet 97: 834-846.
28. Sommer SS, Groszbach AR, Bottema CD (1992) PCR amplification of specific alleles (PASA) is a general method for rapidly detecting known single-base changes. Biotechniques 12: 82-87.
29. Sowokinos J (2001) Biochemical and molecular control of cold-induced sweetening in potatoes. Am J Potato Res 78: 221-236.
30. Talburt WF, Schwimmer S, Burr HK (1975) Structure and chemical composition of the potato tuber. In: Talburt WF, Smith O (eds) Potato Processing. AVI Publishing, Westport, CT., pp 11-42.
31. Tetlow IJ, Morell MK, Emes MJ (2004) Recent developments in understanding the regulation of starch metabolism in higher plants. J Exp Bot 55: 2131-2145.
32. Urbany C, Stich B, Schmidt L, Simon L, Berding H, Junghans H, Niehoff K-H, Braun A, Tacke E, Hofferbert H-R, Lübeck J, Strahwald J, Gebhardt C (2011) Association genetics in Solanum tuberosum provides new insights into potato tuber bruising and enzymatic tissue discoloration. BMC Genomics 12: 7.
33. Whitworth J, Novy R, Hall D, Crosslin J, Brown C (2009) Characterization of broad spectrum potato virus Y resistance in a Solanum tuberosum ssp. andigena-derived population and select breeding clones using molecular markers, grafting, and field inoculations. Am J Pot Res 86: 286-296.
34. Xiong X, Tai GCC, Seabrook JEA, Wehling P (2002) Effectiveness of selection for quality traits during the early stage in the potato breeding population. Plant Breeding 121: 441-444.