-
1
-
-
50649101663
-
Dna topoisomerases: Harnessing and constraining energy to govern chromosome topology
-
Schoeffler, A.J. and Berger, J.M. (2008) DNA topoisomerases: harnessing and constraining energy to govern chromosome topology. Q. Rev. Biophys. 41, 41-101
-
(2008)
Q. Rev. Biophys.
, vol.41
, pp. 41-101
-
-
Schoeffler, A.J.1
Berger, J.M.2
-
2
-
-
81855198087
-
All tangled up: How cells direct, manage and exploit topoisomerase function
-
Vos, S.M., Tretter, E.M., Schmidt, B.H. and Berger, J.M. (2011) All tangled up: how cells direct, manage and exploit topoisomerase function. Nat. Rev. Mol. Cell Biol. 12, 827-841
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 827-841
-
-
Vos, S.M.1
Tretter, E.M.2
Schmidt, B.H.3
Berger, J.M.4
-
3
-
-
77954187741
-
Dna topoisomerases and their poisoning by anticancer and antibacterial drugs
-
Pommier, Y., Leo, E., Zhang, H. and Marchand, C. (2010) DNA topoisomerases and their poisoning by anticancer and antibacterial drugs. Chem. Biol. 17, 421-433
-
(2010)
Chem. Biol.
, vol.17
, pp. 421-433
-
-
Pommier, Y.1
Leo, E.2
Zhang, H.3
Marchand, C.4
-
4
-
-
80055065448
-
The ancestral role of atp hydrolysis in type ii topoisomerases: Prevention of dna double-strand breaks
-
Bates, A.D., Berger, J.M. and Maxwell, A. (2011) The ancestral role of ATP hydrolysis in type II topoisomerases: prevention of DNA double-strand breaks. Nucleic Acids Res. 39, 6327-6339
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 6327-6339
-
-
Bates, A.D.1
Berger, J.M.2
Maxwell, A.3
-
5
-
-
33744811420
-
Dna topoisomerase v: A new fold of mysterious origin
-
Forterre, P. (2006) DNA topoisomerase V: a new fold of mysterious origin. Trends Biotechnol. 24, 245-247
-
(2006)
Trends Biotechnol.
, vol.24
, pp. 245-247
-
-
Forterre, P.1
-
6
-
-
34247496263
-
Origin and evolution of dna topoisomerases
-
Forterre, P., Gribaldo, S., Gadelle, D. and Serre, M.C. (2007) Origin and evolution of DNA topoisomerases. Biochimie 89, 427-446
-
(2007)
Biochimie
, vol.89
, pp. 427-446
-
-
Forterre, P.1
Gribaldo, S.2
Gadelle, D.3
Serre, M.C.4
-
7
-
-
2442599792
-
Structure, molecular mechanisms, and evolutionary relationships in dna topoisomerases
-
Corbett, K.D. and Berger, J.M. (2004) Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases. Annu. Rev. Biophys. Biomol. Struct. 33, 95-118
-
(2004)
Annu. Rev. Biophys. Biomol. Struct.
, vol.33
, pp. 95-118
-
-
Corbett, K.D.1
Berger, J.M.2
-
8
-
-
0021154312
-
Reverse gyrase: A topoisomerase which introduces positive superhelical turns into dna
-
Kikuchi, A. and Asai, K. (1984) Reverse gyrase: a topoisomerase which introduces positive superhelical turns into DNA. Nature 309, 677-681
-
(1984)
Nature
, vol.309
, pp. 677-681
-
-
Kikuchi, A.1
Asai, K.2
-
9
-
-
0021930945
-
Bacterial dna topoisomerase i can relax positively supercoiled dna containing a single stranded loop
-
Kirkegaard, K. and Wang, J.C. (1985) Bacterial DNA topoisomerase I can relax positively supercoiled DNA containing a single stranded loop. J. Mol. Biol. 185, 625-637
-
(1985)
J. Mol. Biol.
, vol.185
, pp. 625-637
-
-
Kirkegaard, K.1
Wang, J.C.2
-
10
-
-
0028115776
-
Three-dimensional structure of the 67k n-terminal fragment of e. Coli dna topoisomerase i
-
Lima, C.D., Wang, J.C. and Mondragon, A. (1994) Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I. Nature 367, 138-146
-
(1994)
Nature
, vol.367
, pp. 138-146
-
-
Lima, C.D.1
Wang, J.C.2
Mondragon, A.3
-
11
-
-
0032552939
-
The zn(ii) binding motifs of e. Coli dna topoisomerase i is part of a high-Affinity dna binding domain
-
Ahumada, A. and Tse-Dinh, Y.C. (1998) The Zn(II) binding motifs of E. coli DNA topoisomerase I is part of a high-Affinity DNA binding domain. Biochem. Biophys. Res. Commun. 251, 509-514
-
(1998)
Biochem. Biophys. Res. Commun.
, vol.251
, pp. 509-514
-
-
Ahumada, A.1
Tse-Dinh, Y.C.2
-
12
-
-
0024818386
-
The carboxy terminal domain of escherichia coli dna topoisomerase i confers higher affinity to dna
-
Beran-Steed, R.K. and Tse-Dinh, Y.C. (1989) The carboxy terminal domain of Escherichia coli DNA topoisomerase I confers higher affinity to DNA. Proteins 6, 249-258
-
(1989)
Proteins
, vol.6
, pp. 249-258
-
-
Beran-Steed, R.K.1
Tse-Dinh, Y.C.2
-
13
-
-
0028240122
-
The carboxyl-terminal residues of escherichia coli dna topoisomerase iii are involved in substrate binding
-
Zhang, H.L. and DiGate, R.J. (1994) The carboxyl-terminal residues of Escherichia coli DNA topoisomerase III are involved in substrate binding. J. Biol. Chem. 269, 9052-9059
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 9052-9059
-
-
Zhang, H.L.1
DiGate, R.J.2
-
14
-
-
33947322802
-
Structural studies of e. Coli topoisomerase iii-dna complexes reveal a novel type ia topoisomerase-dna conformational intermediate
-
Changela, A., DiGate, R.J. and Mondragon, A. (2007) Structural studies of E. coli topoisomerase III-DNA complexes reveal a novel type IA topoisomerase-DNA conformational intermediate. J. Mol. Biol. 368, 105-118
-
(2007)
J. Mol. Biol.
, vol.368
, pp. 105-118
-
-
Changela, A.1
DiGate, R.J.2
Mondragon, A.3
-
15
-
-
0035963340
-
Crystal structure of a complex of a type ia dna topoisomerase with a single-stranded dna molecule
-
Changela, A., DiGate, R.J. and Mondragon, A. (2001) Crystal structure of a complex of a type IA DNA topoisomerase with a single-stranded DNA molecule. Nature 411, 1077-1081
-
(2001)
Nature
, vol.411
, pp. 1077-1081
-
-
Changela, A.1
DiGate, R.J.2
Mondragon, A.3
-
16
-
-
0032851376
-
Conformational changes in e. Coli dna topoisomerase i
-
Feinberg, H., Lima, C.D. and Mondragon, A. (1999) Conformational changes in E. coli DNA topoisomerase I. Nat. Struct. Biol. 6, 918-922
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 918-922
-
-
Feinberg, H.1
Lima, C.D.2
Mondragon, A.3
-
17
-
-
0242710959
-
Structure of a complex between e. Coli dna topoisomerase i and single-stranded dna
-
Perry, K. and Mondragon, A. (2003) Structure of a complex between E. coli DNA topoisomerase I and single-stranded DNA. Structure 11, 1349-1358
-
(2003)
Structure
, vol.11
, pp. 1349-1358
-
-
Perry, K.1
Mondragon, A.2
-
18
-
-
79955566853
-
Crystal structure of a covalent intermediate in dna cleavage and rejoining by escherichia coli dna topoisomerase i
-
Zhang, Z., Cheng, B. and Tse-Dinh, Y.C. (2011) Crystal structure of a covalent intermediate in DNA cleavage and rejoining by Escherichia coli DNA topoisomerase I. Proc. Natl. Acad. Sci. U.S.A. 108, 6939-6944
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 6939-6944
-
-
Zhang, Z.1
Cheng, B.2
Tse-Dinh, Y.C.3
-
19
-
-
0037126054
-
The mechanism of type ia topoisomerases
-
Dekker, N.H., Rybenkov, V.V., Duguet, M., Crisona, N.J., Cozzarelli, N.R., Bensimon, D. and Croquette, V. (2002) The mechanism of type IA topoisomerases. Proc. Natl. Acad. Sci. U.S.A. 99, 12126-12131
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 12126-12131
-
-
Dekker, N.H.1
Rybenkov, V.V.2
Duguet, M.3
Crisona, N.J.4
Cozzarelli, N.R.5
Bensimon, D.6
Croquette, V.7
-
20
-
-
0038061515
-
Thermophilic topoisomerase i on a single dna molecule
-
Dekker, N.H., Viard, T., de La Tour, C.B., Duguet, M., Bensimon, D. and Croquette, V. (2003) Thermophilic topoisomerase I on a single DNA molecule. J. Mol. Biol. 329, 271-282
-
(2003)
J. Mol. Biol.
, vol.329
, pp. 271-282
-
-
Dekker, N.H.1
Viard, T.2
De La Tour, C.B.3
Duguet, M.4
Bensimon, D.5
Croquette, V.6
-
21
-
-
0034677898
-
Roles of topoisomerases in maintaining steady-state dna supercoiling in escherichia coli
-
Zechiedrich, E.L., Khodursky, A.B., Bachellier, S., Schneider, R., Chen, D., Lilley, D.M. and Cozzarelli, N.R. (2000) Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli. J. Biol. Chem. 275, 8103-8113
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 8103-8113
-
-
Zechiedrich, E.L.1
Khodursky, A.B.2
Bachellier, S.3
Schneider, R.4
Chen, D.5
Lilley, D.M.6
Cozzarelli, N.R.7
-
22
-
-
0023712287
-
Identification of a potent decatenating enzyme from escherichia coli
-
DiGate, R.J. and Marians, K.J. (1988) Identification of a potent decatenating enzyme from Escherichia coli. J. Biol. Chem. 263, 13366-13373
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 13366-13373
-
-
DiGate, R.J.1
Marians, K.J.2
-
23
-
-
0024324482
-
A hyperrecombination mutation in s. Cerevisiae identifies a novel eukaryotic topoisomerase
-
Wallis, J.W., Chrebet, G., Brodsky, G., Rolfe, M. and Rothstein, R. (1989) A hyperrecombination mutation in S. cerevisiae identifies a novel eukaryotic topoisomerase. Cell 58, 409-419
-
(1989)
Cell
, vol.58
, pp. 409-419
-
-
Wallis, J.W.1
Chrebet, G.2
Brodsky, G.3
Rolfe, M.4
Rothstein, R.5
-
24
-
-
26244451561
-
A role for topoisomerase iii in a recombination pathway alternative to ruvabc
-
Lopez, C.R., Yang, S., Deibler, R.W., Ray, S.A., Pennington, J.M., Digate, R.J., Hastings, P.J., Rosenberg, S.M. and Zechiedrich, E.L. (2005) A role for topoisomerase III in a recombination pathway alternative to RuvABC. Mol. Microbiol. 58, 80-101
-
(2005)
Mol. Microbiol.
, vol.58
, pp. 80-101
-
-
Lopez, C.R.1
Yang, S.2
Deibler, R.W.3
Ray, S.A.4
Pennington, J.M.5
Digate, R.J.6
Hastings, P.J.7
Rosenberg, S.M.8
Zechiedrich, E.L.9
-
25
-
-
0033031935
-
Recq helicase and topoisomerase iii comprise a novel dna strand passage function: A conserved mechanism for control of dna recombination
-
Harmon, F.G., DiGate, R.J. and Kowalczykowski, S.C. (1999) RecQ helicase and topoisomerase III comprise a novel DNA strand passage function: a conserved mechanism for control of DNA recombination. Mol. Cell 3, 611-620
-
(1999)
Mol. Cell
, vol.3
, pp. 611-620
-
-
Harmon, F.G.1
DiGate, R.J.2
Kowalczykowski, S.C.3
-
26
-
-
44949225070
-
Resolution of converging replication forks by recq and topoisomerase iii
-
Suski, C. and Marians, K.J. (2008) Resolution of converging replication forks by RecQ and topoisomerase III. Mol. Cell 30, 779-789
-
(2008)
Mol. Cell
, vol.30
, pp. 779-789
-
-
Suski, C.1
Marians, K.J.2
-
27
-
-
0028364870
-
Topoisomerase iv can support oric dna replication in vitro
-
Hiasa, H. and Marians, K.J. (1994) Topoisomerase IV can support oriC DNA replication in vitro. J. Biol. Chem. 269, 16371-16375
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 16371-16375
-
-
Hiasa, H.1
Marians, K.J.2
-
28
-
-
84870987232
-
A role for topoisomerase iii in escherichia coli chromosome segregation
-
Perez-Cheeks, B.A., Lee, C., Hayama, R. and Marians, K.J. (2012) A role for topoisomerase III in Escherichia coli chromosome segregation. Mol. Microbiol. 86, 1007-1022
-
(2012)
Mol. Microbiol.
, vol.86
, pp. 1007-1022
-
-
Perez-Cheeks, B.A.1
Lee, C.2
Hayama, R.3
Marians, K.J.4
-
29
-
-
0027976667
-
Decatenating activity of escherichia coli dna gyrase and topoisomerases i and iii during oric and pbr322 dna replication in vitro
-
Hiasa, H., DiGate, R.J. and Marians, K.J. (1994) Decatenating activity of Escherichia coli DNA gyrase and topoisomerases I and III during oriC and pBR322 DNA replication in vitro. J. Biol. Chem. 269, 2093-2099
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 2093-2099
-
-
Hiasa, H.1
DiGate, R.J.2
Marians, K.J.3
-
30
-
-
0028589156
-
Topoisomerase iii, but not topoisomerase i, can support nascent chain elongation during theta-type dna replication
-
Hiasa, H. and Marians, K.J. (1994) Topoisomerase III, but not topoisomerase I, can support nascent chain elongation during theta-type DNA replication. J. Biol. Chem. 269, 32655-32659
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 32655-32659
-
-
Hiasa, H.1
Marians, K.J.2
-
31
-
-
0010107939
-
The role of the carboxyl-terminal amino acid residues in escherichia coli dna topoisomerase iii-mediated catalysis
-
Zhang, H.L., Malpure, S., Li, Z., Hiasa, H. and DiGate, R.J. (1996) The role of the carboxyl-terminal amino acid residues in Escherichia coli DNA topoisomerase III-mediated catalysis. J. Biol. Chem. 271, 9039-9045
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 9039-9045
-
-
Zhang, H.L.1
Malpure, S.2
Li, Z.3
Hiasa, H.4
DiGate, R.J.5
-
32
-
-
0033983784
-
Identification of a unique domain essential for escherichia coli dna topoisomerase iii-catalysed decatenation of replication intermediates
-
Li, Z., Mondragon, A., Hiasa, H., Marians, K.J. and DiGate, R.J. (2000) Identification of a unique domain essential for Escherichia coli DNA topoisomerase III-catalysed decatenation of replication intermediates. Mol. Microbiol. 35, 888-895
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 888-895
-
-
Li, Z.1
Mondragon, A.2
Hiasa, H.3
Marians, K.J.4
DiGate, R.J.5
-
33
-
-
77955629227
-
Cellular strategies for regulating dna supercoiling: A single-molecule perspective
-
Koster, D.A., Crut, A., Shuman, S., Bjornsti, M.A. and Dekker, N.H. (2010) Cellular strategies for regulating DNA supercoiling: a single-molecule perspective. Cell 142, 519-530
-
(2010)
Cell
, vol.142
, pp. 519-530
-
-
Koster, D.A.1
Crut, A.2
Shuman, S.3
Bjornsti, M.A.4
Dekker, N.H.5
-
34
-
-
15844383117
-
Friction and torque govern the relaxation of dna supercoils by eukaryotic topoisomerase ib
-
Koster, D.A., Croquette, V., Dekker, C., Shuman, S. and Dekker, N.H. (2005) Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB. Nature 434, 671-674
-
(2005)
Nature
, vol.434
, pp. 671-674
-
-
Koster, D.A.1
Croquette, V.2
Dekker, C.3
Shuman, S.4
Dekker, N.H.5
-
35
-
-
42449159316
-
Single-molecule observations of topotecan-mediated topib activity at a unique dna sequence
-
Koster, D.A., Czerwinski, F., Halby, L., Crut, A., Vekhoff, P., Palle, K., Arimondo, P.B. and Dekker, N.H. (2008) Single-molecule observations of topotecan-mediated TopIB activity at a unique DNA sequence. Nucleic Acids Res. 36, 2301-2310
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2301-2310
-
-
Koster, D.A.1
Czerwinski, F.2
Halby, L.3
Crut, A.4
Vekhoff, P.5
Palle, K.6
Arimondo, P.B.7
Dekker, N.H.8
-
36
-
-
34447509295
-
Antitumour drugs impede dna uncoiling by topoisomerase i
-
Koster, D.A., Palle, K., Bot, E.S., Bjornsti, M.A. and Dekker, N.H. (2007) Antitumour drugs impede DNA uncoiling by topoisomerase I. Nature 448, 213-217
-
(2007)
Nature
, vol.448
, pp. 213-217
-
-
Koster, D.A.1
Palle, K.2
Bot, E.S.3
Bjornsti, M.A.4
Dekker, N.H.5
-
37
-
-
35548950309
-
Topoisomerase v relaxes supercoiled dna by a constrained swiveling mechanism
-
Taneja, B., Schnurr, B., Slesarev, A., Marko, J.F. and Mondragon, A. (2007) Topoisomerase V relaxes supercoiled DNA by a constrained swiveling mechanism. Proc. Natl. Acad. Sci. U.S.A. 104, 14670-14675
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 14670-14675
-
-
Taneja, B.1
Schnurr, B.2
Slesarev, A.3
Marko, J.F.4
Mondragon, A.5
-
38
-
-
7244245362
-
Micromechanical analysis of the binding of dna-bending proteins hmgb1, nhp6a, and hu reveals their ability to form highly stable dna-protein complexes
-
Skoko, D., Wong, B., Johnson, R.C. and Marko, J.F. (2004) Micromechanical analysis of the binding of DNA-bending proteins HMGB1, NHP6A, and HU reveals their ability to form highly stable DNA-protein complexes. Biochemistry 43, 13867-13874
-
(2004)
Biochemistry
, vol.43
, pp. 13867-13874
-
-
Skoko, D.1
Wong, B.2
Johnson, R.C.3
Marko, J.F.4
-
39
-
-
34548403896
-
Torque and dynamics of linking number relaxation in stretched supercoiled dna
-
Marko, J.F. (2007) Torque and dynamics of linking number relaxation in stretched supercoiled DNA. Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. 76, 021926
-
(2007)
Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys.
, vol.76
, pp. 021926
-
-
Marko, J.F.1
-
40
-
-
84869047042
-
Bacterial topoisomerase i and topoisomerase iii relax supercoiled dna via distinct pathways
-
Terekhova, K., Gunn, K.H., Marko, J.F. and Mondragon, A. (2012) Bacterial topoisomerase I and topoisomerase III relax supercoiled DNA via distinct pathways. Nucleic Acids Res. 40, 10432-10440
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 10432-10440
-
-
Terekhova, K.1
Gunn, K.H.2
Marko, J.F.3
Mondragon, A.4
|