-
1
-
-
84876920637
-
In with the old, in with the new: The promiscuity of the duplication process engenders diverse pathways for novel gene creation
-
Article ID 341932
-
In with the old, in with the new: the promiscuity of the duplication process engenders diverse pathways for novel gene creation. Katju V, Int J Evol Biol 2012 2012 24 Article ID 341932
-
(2012)
Int J Evol Biol
, vol.2012
, pp. 24
-
-
Katju, V.1
-
2
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
10.1126/science.290.5494.1151 11073452
-
The evolutionary fate and consequences of duplicate genes. Lynch M, Conery JS, Science 2000 290 1151 1155 10.1126/science.290.5494.1151 11073452
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
3
-
-
0037500141
-
Evolution by gene duplication: An update
-
DOI 10.1016/S0169-5347(03)00033-8
-
Evolution by gene duplication: an update. Zhang J, Trends Ecol Evol 2003 18 292 298 10.1016/S0169-5347(03)00033-8 (Pubitemid 36631749)
-
(2003)
Trends in Ecology and Evolution
, vol.18
, Issue.6
, pp. 292-298
-
-
Zhang, J.1
-
4
-
-
4444291843
-
Detection of large-scale variation in the human genome
-
DOI 10.1038/ng1416
-
Detection of large-scale variation in the human genome. Iafrate AJ, Feuk L, Rivera MN, Listewnik ML, Donahoe PK, Qi Y, Scherer SW, Lee C, Nat Genet 2004 36 949 951 10.1038/ng1416 15286789 (Pubitemid 39167488)
-
(2004)
Nature Genetics
, vol.36
, Issue.9
, pp. 949-951
-
-
Iafrate, A.J.1
Feuk, L.2
Rivera, M.N.3
Listewnik, M.L.4
Donahoe, P.K.5
Qi, Y.6
Scherer, S.W.7
Lee, C.8
-
5
-
-
33751329250
-
Global variation in copy number in the human genome
-
DOI 10.1038/nature05329, PII NATURE05329
-
Global variation in copy number in the human genome. Redon R, Ishikawa S, Fitch KR, Feuk L, Perry GH, Andrews TD, Fiegler H, Shapero MH, Carson AR, Chen WW, Cho EK, Dallaire S, Freeman JL, Gonzalez JR, Gratacos M, Huang J, Kalaitzopoulos D, Komura D, MacDonald JR, Marshall CR, Mei R, Montgomery L, Nishimura K, Okamura K, Shen F, Somerville MJ, Tchinda J, Valsesia A, Woodwark C, Yang FT, Nature 2006 444 444 454 10.1038/nature05329 17122850 (Pubitemid 44809057)
-
(2006)
Nature
, vol.444
, Issue.7118
, pp. 444-454
-
-
Redon, R.1
Ishikawa, S.2
Fitch, K.R.3
Feuk, L.4
Perry, G.H.5
Andrews, T.D.6
Fiegler, H.7
Shapero, M.H.8
Carson, A.R.9
Chen, W.10
Cho, E.K.11
Dallaire, S.12
Freeman, J.L.13
Gonzalez, J.R.14
Gratacos, M.15
Huang, J.16
Kalaitzopoulos, D.17
Komura, D.18
MacDonald, J.R.19
Marshall, C.R.20
Mei, R.21
Montgomery, L.22
Nishimura, K.23
Okamura, K.24
Shen, F.25
Somerville, M.J.26
Tchinda, J.27
Valsesia, A.28
Woodwark, C.29
Yang, F.30
Zhang, J.31
Zerjal, T.32
Zhang, J.33
Armengol, L.34
Conrad, D.F.35
Estivill, X.36
Tyler-Smith, C.37
Carter, N.P.38
Aburatani, H.39
Lee, C.40
Jones, K.W.41
Scherer, S.W.42
Hurles, M.E.43
more..
-
6
-
-
55549143682
-
Copy number variation and evolution in humans and chimpanzees
-
10.1101/gr.082016.108 18775914
-
Copy number variation and evolution in humans and chimpanzees. Perry GH, Yang F, Marques-Bonet T, Murphy C, Fitzgerald T, Lee AS, Hyland C, Stone AC, Hurles ME, Tyler-Smith C, Eichler EE, Carter NP, Lee C, Redon R, Genome Res 2008 18 1698 1710 10.1101/gr.082016.108 18775914
-
(2008)
Genome Res
, vol.18
, pp. 1698-1710
-
-
Perry, G.H.1
Yang, F.2
Marques-Bonet, T.3
Murphy, C.4
Fitzgerald, T.5
Lee, A.S.6
Hyland, C.7
Stone, A.C.8
Hurles, M.E.9
Tyler-Smith, C.10
Eichler, E.E.11
Carter, N.P.12
Lee, C.13
Redon, R.14
-
7
-
-
33846614650
-
A high-resolution map of segmental DNA copy number variation in the mouse genome
-
DOI 10.1371/journal.pgen.0030003
-
A high-resolution map of the segmental DNA copy number variation in the mouse genome. Graubert TA, Cahan P, Edwin D, Selzer RR, Richmond TA, Eis PS, Shannon WD, Li X, McLeod HL, Cheverud JM, Ley TJ, PLoS Genet 2007 3 3 10.1371/journal.pgen.0030003 17206864 (Pubitemid 46172385)
-
(2007)
PLoS Genetics
, vol.3
, Issue.1
, pp. 0021-0029
-
-
Graubert, T.A.1
Cahan, P.2
Edwin, D.3
Selzer, R.R.4
Richmond, T.A.5
Eis, P.S.6
Shannon, W.D.7
Li, X.8
McLeod, H.L.9
Cheverud, J.M.10
Ley, T.J.11
-
8
-
-
19444370609
-
Copy-number polymorphisms: Mining the tip of the iceberg
-
Copy-number polymorphisms: mining the tip of the iceberg. Buckley PG, Mantripragada KK, Piotrowski A, Diaz De Stahl T, Dumanski JP, Trends Genet 2008 21 315 317
-
(2008)
Trends Genet
, vol.21
, pp. 315-317
-
-
Buckley, P.G.1
Mantripragada, K.K.2
Piotrowski, A.3
Diaz De Stahl, T.4
Dumanski, J.P.5
-
9
-
-
43249112744
-
Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution
-
DOI 10.1186/1471-2164-9-168
-
Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution. Griffin DK, Robertson LB, Tempest HG, Vignal A, Fillon V, Crooijmans RP, Groenen MA, Deryusheva S, Gaginskaya E, Carre W, Waddington D, Talbot R, Volker M, Masabanda JS, Burt DW, BMC Genomics 2008 9 168 10.1186/1471-2164-9-168 18410676 (Pubitemid 351650161)
-
(2008)
BMC Genomics
, vol.9
, pp. 168
-
-
Griffin, D.K.1
Robertson, L.B.2
Tempest, H.G.3
Vignal, A.4
Fillon, V.5
Crooijmans, R.P.M.A.6
Groenen, M.A.M.7
Deryusheva, S.8
Gaginskaya, E.9
Carre, W.10
Waddington, D.11
Talbot, R.12
Volker, M.13
Masabanda, J.S.14
Burt, D.W.15
-
10
-
-
57149099394
-
Sequencing of natural strains of Arabidopsis thaliana with short reads
-
10.1101/gr.080200.108 18818371
-
Sequencing of natural strains of Arabidopsis thaliana with short reads. Ossowski S, Schneeberger K, Clark RM, Lanz C, Warthmann N, Weigel D, Genome Res 2008 18 2024 2033 10.1101/gr.080200.108 18818371
-
(2008)
Genome Res
, vol.18
, pp. 2024-2033
-
-
Ossowski, S.1
Schneeberger, K.2
Clark, R.M.3
Lanz, C.4
Warthmann, N.5
Weigel, D.6
-
11
-
-
73649121258
-
Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content
-
10.1371/journal.pgen.1000734 19956538
-
Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. Springer NM, Ying K, Fu Y, Ji TM, Yeh CT, Jia Y, Wu W, Richmond T, Kitzman J, Rosenbaum H, Iniguez AL, Barbazuk WB, Jeddeloh JA, Nettleton D, Schnable PS, PLoS Genet 2009 5 1000734 10.1371/journal.pgen.1000734 19956538
-
(2009)
PLoS Genet
, vol.5
, pp. 51000734
-
-
Springer, N.M.1
Ying, K.2
Fu, Y.3
Ji, T.M.4
Yeh, C.T.5
Jia, Y.6
Wu, W.7
Richmond, T.8
Kitzman, J.9
Rosenbaum, H.10
Iniguez, A.L.11
Barbazuk, W.B.12
Jeddeloh, J.A.13
Nettleton, D.14
Schnable, P.S.15
-
12
-
-
48249133274
-
A genome-wide view of the spectrum of spontaneous mutations in yeast
-
10.1073/pnas.0803466105 18583475
-
A genome-wide view of the spectrum of spontaneous mutations in yeast. Lynch M, Sung W, Morris K, Coffey N, Landry CR, Dopman EB, Dickinson WJ, Okamoto K, Kulkarni S, Hartl DL, Thomas WK, Proc Natl Acad Sci USA 2008 105 9272 9277 10.1073/pnas.0803466105 18583475
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 9272-9277
-
-
Lynch, M.1
Sung, W.2
Morris, K.3
Coffey, N.4
Landry, C.R.5
Dopman, E.B.6
Dickinson, W.J.7
Okamoto, K.8
Kulkarni, S.9
Hartl, D.L.10
Thomas, W.K.11
-
13
-
-
79951773479
-
High spontaneous rate of duplication in Caenorhabditis elegans
-
21295484
-
High spontaneous rate of duplication in Caenorhabditis elegans. Lipinski KJ, Farslow JC, Fitzpatrick KA, Lynch M, Katju V, Bergthorsson U, Curr Biol 2011 21 306 310 21295484
-
(2011)
Curr Biol
, vol.21
, pp. 306-310
-
-
Lipinski, K.J.1
Farslow, J.C.2
Fitzpatrick, K.A.3
Lynch, M.4
Katju, V.5
Bergthorsson, U.6
-
15
-
-
0033209331
-
Evolutionary preservation of redundant duplicated genes
-
DOI 10.1006/scdb.1999.0337, PII S1084952199903373
-
Evolutionary preservation of redundant duplicated genes. Krakauer DC, Nowak MA, Semin Cell Dev Biol 1999 10 555 559 10.1006/scdb.1999.0337 10597640 (Pubitemid 129513243)
-
(1999)
Seminars in Cell and Developmental Biology
, vol.10
, Issue.5
, pp. 555-559
-
-
Krakauer, D.C.1
Nowak, M.A.2
-
16
-
-
0033977618
-
Determinants of substitution rates in mammalian genes: Expression pattern affects selection intensity but not mutation rate
-
Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate. Duret L, Mouchiroud D, Mol Biol Evol 2000 17 68 74 10.1093/oxfordjournals.molbev.a026239 10666707 (Pubitemid 30056993)
-
(2000)
Molecular Biology and Evolution
, vol.17
, Issue.1
, pp. 68-74
-
-
Duret, L.1
Mouchiroud, D.2
-
17
-
-
0034978556
-
Highly expressed genes in yeast evolve slowly
-
Highly expressed genes in yeast evolve slowly. Pál C, Papp B, Hurst LD, Genetics 2001 158 927 931 11430355 (Pubitemid 32552328)
-
(2001)
Genetics
, vol.158
, Issue.2
, pp. 927-931
-
-
Pal, C.1
Papp, B.2
Hurst, L.D.3
-
18
-
-
2942534505
-
Erratum: No simple dependence between protein evolution rate and the number of protein-protein interactions: Only the most prolific interactors tend to evolve slowly (BMC Evolutionary Biology (2003) 3 (1))
-
DOI 10.1186/1471-2148-3-5
-
No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly. Jordan IK, Wolf YI, Koonin EV, BMC Evol Biol 2003 3 5 10.1186/1471-2148-3-5 (Pubitemid 38762002)
-
(2003)
BMC Evolutionary Biology
, vol.3
, pp. 5
-
-
Jordan, I.K.1
Wolf, Y.I.2
Koonin, E.V.3
-
19
-
-
0038708556
-
Rate of protein evolution versus fitness effect of gene deletion
-
DOI 10.1093/molbev/msg078
-
Rate of protein evolution versus fitness effect of gene deletion. Yang J, Gu Z, Li W-H, Mol Biol Evol 2003 20 772 774 10.1093/molbev/msg078 12679525 (Pubitemid 36539013)
-
(2003)
Molecular Biology and Evolution
, vol.20
, Issue.5
, pp. 772-774
-
-
Yang, J.1
Gu, Z.2
Li, W.-H.3
-
20
-
-
3042591076
-
Common pattern of evolution of gene expression level and protein sequence in Drosophila
-
DOI 10.1093/molbev/msh128
-
Common pattern of evolution of gene expression level and protein sequence in Drosophila. Nuzhdin SV, Wayne ML, Harmon KL, McIntyre LM, Mol Biol Evol 2004 21 1308 1317 10.1093/molbev/msh128 15034135 (Pubitemid 38823733)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.7
, pp. 1308-1317
-
-
Nuzhdin, S.V.1
Wayne, M.L.2
Harmon, K.L.3
McIntyre, L.M.4
-
21
-
-
26444621352
-
Why highly expressed proteins evolve slowly
-
DOI 10.1073/pnas.0504070102
-
Why highly expressed proteins evolve slowly? Drummond DA, Bloom JD, Adami C, Wilke CO, Arnod FH, Proc Natl Acad Sci USA 2005 102 14338 14343 10.1073/pnas.0504070102 16176987 (Pubitemid 41429699)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.40
, pp. 14338-14343
-
-
Drummond, D.A.1
Bloom, J.D.2
Adami, C.3
Wilke, C.O.4
Arnold, F.H.5
-
22
-
-
33646588998
-
Correlated asymmetry of sequence and functional divergence between duplicate proteins of Saccharomyces cerevisiae
-
DOI 10.1093/molbev/msj115
-
Correlated asymmetry of sequence and functional divergence between duplicate proteins of Saccharomyces cerevisiae. Kim SH, Yi SV, Mol Biol Evol 2006 23 1068 1075 10.1093/molbev/msj115 16510556 (Pubitemid 43726072)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.5
, pp. 1068-1075
-
-
Kim, S.-H.1
Yi, S.V.2
-
23
-
-
80053345415
-
Local synteny and codon usage contribute to asymmetric sequence divergence of Saccharomyces cerevisiae gene duplicates
-
10.1186/1471-2148-11-279 21955875
-
Local synteny and codon usage contribute to asymmetric sequence divergence of Saccharomyces cerevisiae gene duplicates. Bu L, Bergthorsson U, Katju V, BMC Evol Biol 2011 11 279 10.1186/1471-2148-11-279 21955875
-
(2011)
BMC Evol Biol
, vol.11
, pp. 279
-
-
Bu, L.1
Bergthorsson, U.2
Katju, V.3
-
24
-
-
4744343021
-
The altered evolutionary trajectories of gene duplicates
-
DOI 10.1016/j.tig.2004.09.001, PII S0168952504002501
-
The altered evolutionary trajectories of gene duplicates. Lynch M, Katju V, Trends Genet 2004 20 544 549 10.1016/j.tig.2004.09.001 15475113 (Pubitemid 39314561)
-
(2004)
Trends in Genetics
, vol.20
, Issue.11
, pp. 544-549
-
-
Lynch, M.1
Katju, V.2
-
25
-
-
0027423610
-
Evolution of duplicate genes in a tetraploid animal, Xenopus laevis
-
Evolution of duplicate genes in a tetraploid animal, Xenopus laevis. Hughes MK, Hughes AL, Mol Biol Evol 1993 10 1360 1369 8277859 (Pubitemid 23352616)
-
(1993)
Molecular Biology and Evolution
, vol.10
, Issue.6
, pp. 1360-1369
-
-
Hughes, M.K.1
Hughes, A.L.2
-
26
-
-
0345107239
-
Selection in the evolution of gene duplications
-
Selection in the evolution of gene duplications. Kondrashov FA, Rogozin IB, Wolf YI, Koonin EV, Genome Biol 2002 3 8
-
(2002)
Genome Biol
, vol.3
, pp. 188
-
-
Kondrashov, F.A.1
Rogozin, I.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
27
-
-
0036726239
-
Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana
-
Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana. Zhang L, Vision TJ, Gaut BS, Mol Biol Evol 2002 19 1464 1473 10.1093/oxfordjournals.molbev.a004209 12200474 (Pubitemid 36752771)
-
(2002)
Molecular Biology and Evolution
, vol.19
, Issue.9
, pp. 1464-1473
-
-
Zhang, L.1
Vision, T.J.2
Gaut, B.S.3
-
28
-
-
0141853996
-
Asymmetric sequence divergence of duplicate genes
-
DOI 10.1101/gr.1252603
-
Asymmetric sequence divergence of duplicate genes. Conant GC, Wagner A, Genome Res 2003 13 2052 2058 10.1101/gr.1252603 12952876 (Pubitemid 37161762)
-
(2003)
Genome Research
, vol.13
, Issue.9
, pp. 2052-2058
-
-
Conant, G.C.1
Wagner, A.2
-
29
-
-
0642373709
-
Different evolutionary patterns between young duplicate genes in the human genome
-
10.1186/gb-2003-4-9-r56 12952535
-
Different evolutionary patterns between young duplicate genes in the human genome. Zhang P, Gu ZL, Li W-H, Genome Biol 2003 4 56 10.1186/gb-2003-4-9- r56 12952535
-
(2003)
Genome Biol
, vol.4
, pp. 1856
-
-
Zhang, P.1
Gu, Z.L.2
Li, W.-H.3
-
30
-
-
33847611887
-
Not born equal: Increased rate asymmetry in relocated and retrotransposed rodent gene duplicates
-
DOI 10.1093/molbev/msl199
-
Not born equal: increased rate asymmetry in relocated and retrotransposed rodent gene duplicates. Cusack BP, Wolfe KH, Mol Biol Evol 2007 24 679 686 17179139 (Pubitemid 46355795)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.3
, pp. 679-686
-
-
Cusack, B.P.1
Wolfe, K.H.2
-
31
-
-
70349445554
-
Duplication mechanism and disruptions in flanking regions determine the fate of mammalian gene duplicates
-
10.1089/cmb.2009.0074 19772436
-
Duplication mechanism and disruptions in flanking regions determine the fate of mammalian gene duplicates. Jun J, Ryvkin P, Hemphill E, Nelson C, J Comput Biol 2009 16 1253 1266 10.1089/cmb.2009.0074 19772436
-
(2009)
J Comput Biol
, vol.16
, pp. 1253-1266
-
-
Jun, J.1
Ryvkin, P.2
Hemphill, E.3
Nelson, C.4
-
32
-
-
77956465856
-
Asymmetric and non-uniform evolution of recently duplicated human genes
-
10.1186/1745-6150-5-54
-
Asymmetric and non-uniform evolution of recently duplicated human genes. Panchin AY, Gelfand MS, Ramensky VE, Artamonova II, Biol Dir 2010 5 54 10.1186/1745-6150-5-54
-
(2010)
Biol Dir
, vol.5
, pp. 54
-
-
Panchin, A.Y.1
Gelfand, M.S.2
Ramensky, V.E.3
Artamonova, I.I.4
-
33
-
-
38049038829
-
A burst of protein sequence evolution and a prolonged period of asymmetric evolution following gene duplication in yeast
-
18025270
-
A burst of protein sequence evolution and a prolonged period of asymmetric evolution following gene duplication in yeast. Scannell DR, Wolfe KH, Genome Res 2008 18 137 147 18025270
-
(2008)
Genome Res
, vol.18
, pp. 137-147
-
-
Scannell, D.R.1
Wolfe, K.H.2
-
34
-
-
66049138497
-
Adaptive evolution of young gene duplicates in mammals
-
10.1101/gr.085951.108 19411603
-
Adaptive evolution of young gene duplicates in mammals. Han MV, Demuth JP, McGrath CL, Casola C, Hahn MW, Genome Res 2009 19 859 867 10.1101/gr.085951.108 19411603
-
(2009)
Genome Res
, vol.19
, pp. 859-867
-
-
Han, M.V.1
Demuth, J.P.2
McGrath, C.L.3
Casola, C.4
Hahn, M.W.5
-
35
-
-
0346100700
-
The Structure and Early Evolution of Recently Arisen Gene Duplicates in the Caenorhabditis elegans Genome
-
The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome. Katju V, Lynch M, Genetics 2003 165 1793 1803 14704166 (Pubitemid 38040270)
-
(2003)
Genetics
, vol.165
, Issue.4
, pp. 1793-1803
-
-
Katju, V.1
Lynch, M.2
-
36
-
-
33646559207
-
On the formation of novel genes by duplication in the caenorhabditis elegans genome
-
DOI 10.1093/molbev/msj114
-
On the formation of novel genes by duplication in the Caenorhabditis elegans genome. Katju V, Lynch M, Mol Biol Evol 2006 23 1056 1067 10.1093/molbev/msj114 16500928 (Pubitemid 43726071)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.5
, pp. 1056-1067
-
-
Katju, V.1
Lynch, M.2
-
37
-
-
0032509302
-
Genome sequence of the nematode C. elegans: A platform for investigating biology
-
9851916
-
Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium, Science 1998 282 2012 2018 9851916
-
(1998)
Science
, vol.282
, pp. 2012-2018
-
-
The, C.1
Sequencing Consortium, E.2
-
38
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
PAML: a program package for phylogenetic analysis by maximum likelihood. Yang Z, CABIOS 1997 13 555 556 9367129 (Pubitemid 27480216)
-
(1997)
Computer Applications in the Biosciences
, vol.13
, Issue.5
, pp. 555-556
-
-
Yang, Z.1
-
39
-
-
0027453388
-
Simple methods for testing the molecular evolutionary clock hypothesis
-
Simple methods for testing the molecular evolutionary clock hypothesis. Tajima F, Genetics 1993 135 599 607 8244016 (Pubitemid 23307610)
-
(1993)
Genetics
, vol.135
, Issue.2
, pp. 599-607
-
-
Tajima, F.1
-
40
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
DOI 10.1093/molbev/msm092
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Tamura K, Dudley J, Nei M, Kumar S, Mol Biol Evol 2007 24 1596 1599 10.1093/molbev/msm092 17488738 (Pubitemid 47236692)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
41
-
-
33646161470
-
Very low power to detect asymmetric divergence of duplicated genes
-
Springer-Verlag McLysaght A, Huson DH
-
Very low power to detect asymmetric divergence of duplicated genes. Seoighe C, Scheffler K, RECOMB 2005 Workshop on Comparative Genomics Springer-Verlag, McLysaght A, Huson DH, 2005 142 152
-
(2005)
RECOMB 2005 Workshop on Comparative Genomics
, pp. 142-152
-
-
Seoighe, C.1
Scheffler, K.2
-
42
-
-
0019726330
-
Pseudogenes as a paradigm of neutral evolution
-
DOI 10.1038/292237a0
-
Pseudogenes as a paradigm for neutral evolution. Li WH, Gojobori T, Nei M, Nature 1981 292 237 239 10.1038/292237a0 7254315 (Pubitemid 11001836)
-
(1981)
Nature
, vol.292
, Issue.5820
, pp. 237-239
-
-
Li, W.H.1
Gojobori, T.2
Nei, M.3
-
43
-
-
0020317308
-
Patterns of nucleotide substitution in pseudogenes and functional genes
-
DOI 10.1007/BF01733904
-
Patterns of nucleotide substitution in pseudogenes and functional genes. Gojobori T, Li WH, Graur D, J Mol Evol 1982 18 360 369 10.1007/BF01733904 7120431 (Pubitemid 12023396)
-
(1982)
Journal of Molecular Evolution
, vol.18
, Issue.5
, pp. 360-369
-
-
Gojobori, T.1
Li, W.H.2
Graur, D.3
-
44
-
-
67650296441
-
Evolutionary dynamics of recently duplicated genes: Selective constraints on diverging paralogs in the Drosophila pseudoobscura genome
-
10.1007/s00239-009-9254-1 19536449
-
Evolutionary dynamics of recently duplicated genes: selective constraints on diverging paralogs in the Drosophila pseudoobscura genome. Meisel RP, J Mol Evol 2009 69 81 93 10.1007/s00239-009-9254-1 19536449
-
(2009)
J Mol Evol
, vol.69
, pp. 81-93
-
-
Meisel, R.P.1
-
46
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Preservation of duplicate genes by complementary, degenerative mutations. Force A, Lynch M, Pickett FB, Amores A, Yan YL, Postlethwait J, Genetics 1999 151 1531 1545 10101175 (Pubitemid 29177561)
-
(1999)
Genetics
, vol.151
, Issue.4
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.-L.5
Postlethwait, J.6
-
47
-
-
33847042378
-
The evolutionary fate of recently duplicated retrogenes in mice
-
10.1111/j.1420-9101.2006.01245.x 17305828
-
The evolutionary fate of recently duplicated retrogenes in mice. Gayral P, Camindae P, Boursot P, Galtier N, J Evol Biol 2007 20 617 626 10.1111/j.1420-9101.2006.01245.x 17305828
-
(2007)
J Evol Biol
, vol.20
, pp. 617-626
-
-
Gayral, P.1
Camindae, P.2
Boursot, P.3
Galtier, N.4
-
48
-
-
1642473033
-
Comparative analysis of processed pseudogenes in the mouse and human genomes
-
DOI 10.1016/j.tig.2003.12.005
-
Comparative analysis of processed pseudogenes in the mouse and human genomes. Zhang ZL, Carriero N, Gerstein M, Trends Genet 2004 20 62 67 10.1016/j.tig.2003.12.005 14746985 (Pubitemid 38121355)
-
(2004)
Trends in Genetics
, vol.20
, Issue.2
, pp. 62-67
-
-
Zhang, Z.1
Carriero, N.2
Gerstein, M.3
-
49
-
-
27844557002
-
Emergence of young human genes after a burst of retroposition in primates
-
DOI 10.1371/journal.pbio.0030357, e357
-
Emergence of young human genes after a burst of reptroposition in primates. Marques AC, Dupanloup I, Vinckenbosch N, Reymond A, Kaessmann H, PLoS Biol 2005 3 1970 1979 (Pubitemid 41652449)
-
(2005)
PLoS Biology
, vol.3
, Issue.11
, pp. 1970-1979
-
-
Marques, A.C.1
Dupanloup, I.2
Vinckenbosch, N.3
Reymond, A.4
Kaessmann, H.5
-
50
-
-
39749090675
-
Quantifying the major mechanisms of recent gene duplications in the human and mouse genomes: A novel strategy to estimate gene duplication rates
-
DOI 10.1186/gb-2007-8-8-r158
-
Quantifying the major mechanisms of recent gene duplications in the human and mouse genomes: a novel strategy to estimate gene duplication rates. Pan D, Zhang LQ, Genome Biol 2007 8 158 10.1186/gb-2007-8-8-r158 17683522 (Pubitemid 351891479)
-
(2007)
Genome Biology
, vol.8
, Issue.8
-
-
Pan, D.1
Zhang, L.2
-
51
-
-
0032953158
-
Gene duplication and gene conversion in the Caenorhabditis elegans genome
-
DOI 10.1007/PL00006498
-
Gene duplication and gene conversion in the Caenorhabditis elegans genome. Semple C, Wolfe KH, J Mol Evol 1999 48 555 564 10.1007/PL00006498 10198121 (Pubitemid 29211430)
-
(1999)
Journal of Molecular Evolution
, vol.48
, Issue.5
, pp. 555-564
-
-
Semple, C.1
Wolfe, K.H.2
-
52
-
-
79952093694
-
Genomic and population-level effects of gene conversion in Caenorhabditis paralogs
-
10.3390/genes1030452
-
Genomic and population-level effects of gene conversion in Caenorhabditis paralogs. Katju V, Bergthorsson U, Genes 2010 1 452 468 10.3390/genes1030452
-
(2010)
Genes
, vol.1
, pp. 452-468
-
-
Katju, V.1
Bergthorsson, U.2
-
53
-
-
0024262193
-
Recombination between repeated genes in microorganisms
-
10.1146/annurev.ge.22.120188.001051 3071247
-
Recombination between repeated genes in microorganisms. Petes TD, Hill CW, Annu Rev Genet 1988 22 147 168 10.1146/annurev.ge.22.120188.001051 3071247
-
(1988)
Annu Rev Genet
, vol.22
, pp. 147-168
-
-
Petes, T.D.1
Hill, C.W.2
-
54
-
-
56049100499
-
Sex change by gene conversion in a Caenorhabditis elegans mutant
-
10.1534/genetics.108.090035 18757925
-
Sex change by gene conversion in a Caenorhabditis elegans mutant. Katju V, LaBeau EA, Lipinski KJ, Bergthorsson U, Genetics 2008 180 669 672 10.1534/genetics.108.090035 18757925
-
(2008)
Genetics
, vol.180
, pp. 669-672
-
-
Katju, V.1
Labeau, E.A.2
Lipinski, K.J.3
Bergthorsson, U.4
-
55
-
-
77953765216
-
Gene conversion and DNA sequence polymorphism in the sex-determination gene fog-2 and its paralog ftr-1 in Caenorhabditis elegans
-
10.1093/molbev/msq039 20133352
-
Gene conversion and DNA sequence polymorphism in the sex-determination gene fog-2 and its paralog ftr-1 in Caenorhabditis elegans. Rane HS, Smith JM, Bergthorsson U, Katju V, Mol Biol Evol 2010 27 1561 1569 10.1093/molbev/msq039 20133352
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1561-1569
-
-
Rane, H.S.1
Smith, J.M.2
Bergthorsson, U.3
Katju, V.4
-
56
-
-
2442418972
-
Genomic Background Predicts the Fate of Duplicated Genes: Evidence from the Yeast Genome
-
DOI 10.1534/genetics.166.4.1995
-
Genomic background predicts the fate of duplicated genes: evidence from the yeast genome. Zhang Z, Kishino H, Genetics 2004 166 1995 1999 10.1534/genetics.166.4.1995 15126414 (Pubitemid 38621076)
-
(2004)
Genetics
, vol.166
, Issue.4
, pp. 1995-1999
-
-
Zhang, Z.1
Kishino, H.2
-
57
-
-
0036613754
-
Clustering of housekeeping genes provide a unified model of gene order in the human genome
-
10.1038/ng887 11992122
-
Clustering of housekeeping genes provide a unified model of gene order in the human genome. Lercher MJ, Urrutia AO, Hurst LD, Nat Genet 2002 31 180 183 10.1038/ng887 11992122
-
(2002)
Nat Genet
, vol.31
, pp. 180-183
-
-
Lercher, M.J.1
Urrutia, A.O.2
Hurst, L.D.3
-
58
-
-
14544301584
-
Clusters of co-expressed genes in mammalian genomes are conserved by natural selection
-
DOI 10.1093/molbev/msi062
-
Clusters of co-expressed genes in mammalian genomes are conserved by natural selection. Singer GAC, Lloyd AT, Huminiecki LB, Wolfe KH, Mol Biol Evol 2005 22 767 775 15574806 (Pubitemid 40299526)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.3
, pp. 767-775
-
-
Singer, G.A.C.1
Lloyd, A.T.2
Huminiecki, L.B.3
Wolfe, K.H.4
-
59
-
-
33748195447
-
Evolutionary origin and maintenance of coexpressed gene clusters in mammals
-
DOI 10.1093/molbev/msl034
-
Evolutionary origin and maintenance of coexpressed gene clusters in mammals. Semon M, Duret L, Mol Biol Evol 2006 23 1715 1723 10.1093/molbev/msl034 16757654 (Pubitemid 44309765)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.9
, pp. 1715-1723
-
-
Semon, M.1
Duret, L.2
-
60
-
-
0003328368
-
Evidence for large domains of similarly expressed genes in the Drosophila genome
-
10.1186/1475-4924-1-5 12144710
-
Evidence for large domains of similarly expressed genes in the Drosophila genome. Spellman PT, Rubin GM, J Biol 2002 1 5 10.1186/1475-4924-1-5 12144710
-
(2002)
J Biol
, vol.1
, pp. 5
-
-
Spellman, P.T.1
Rubin, G.M.2
-
61
-
-
27744554510
-
Correlation between sequence conservation and the genomic context after gene duplication
-
DOI 10.1093/nar/gki913
-
Correlation between sequence conservation and the genomic context after gene duplication. Notebaart RA, Huynen MA, Teusink B, Siezen RJ, Snel B, Nucl Acids Res 2005 33 6164 6171 10.1093/nar/gki913 16257980 (Pubitemid 41742554)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.19
, pp. 6164-6171
-
-
Notebaart, R.A.1
Huynen, M.A.2
Teusink, B.3
Siezen, R.J.4
Snel, B.5
-
62
-
-
0036578891
-
Evidence of en bloc duplication in vertebrate genomes
-
10.1038/ng855 11967531
-
Evidence of en bloc duplication in vertebrate genomes. Abi-Rached L, Gilles A, Shiina T, Pontarotti P, Inoko H, Nat Genet 2002 31 100 105 10.1038/ng855 11967531
-
(2002)
Nat Genet
, vol.31
, pp. 100-105
-
-
Abi-Rached, L.1
Gilles, A.2
Shiina, T.3
Pontarotti, P.4
Inoko, H.5
-
63
-
-
0036314772
-
Studying genomes through the aeons: Protein families, pseudogenes and proteome evolution
-
DOI 10.1016/S0022-2836(02)00109-2
-
Studying genomes through the aeons: protein families, pseudogenes and proteome evolution. Harrison PM, Gerstein M, J Mol Biol 2002 318 1155 1174 10.1016/S0022-2836(02)00109-2 12083509 (Pubitemid 34753989)
-
(2002)
Journal of Molecular Biology
, vol.318
, Issue.5
, pp. 1155-1174
-
-
Harrison, P.M.1
Gerstein, M.2
-
64
-
-
0346155809
-
Pseudogenes: Are They "Junk" or Functional DNA?
-
DOI 10.1146/annurev.genet.37.040103.103949
-
Pseudogenes: are they "junk" or functional DNA? Balakirev ES, Ayala FJ, Annu Rev Genet 2003 37 123 151 10.1146/annurev.genet.37.040103.103949 14616058 (Pubitemid 38041423)
-
(2003)
Annual Review of Genetics
, vol.37
, pp. 123-151
-
-
Balakirev, E.S.1
Ayala, F.J.2
-
65
-
-
70349741137
-
Assessing the genomic evidence for conserved transcribed pseudogenes
-
10.1186/1471-2164-10-435 19754956
-
Assessing the genomic evidence for conserved transcribed pseudogenes. Khachane AN, Harrison PM, BMC Genomics 2009 10 435 10.1186/1471-2164-10-435 19754956
-
(2009)
BMC Genomics
, vol.10
, pp. 435
-
-
Khachane, A.N.1
Harrison, P.M.2
-
66
-
-
77951079485
-
Origin and fate of pseudogenes in Hemiascomycetes: A comparative analysis
-
10.1186/1471-2164-11-260 20412590
-
Origin and fate of pseudogenes in Hemiascomycetes: a comparative analysis. Lafontaine I, Dujon B, BMC Genomics 2010 11 260 10.1186/1471-2164-11- 260 20412590
-
(2010)
BMC Genomics
, vol.11
, pp. 260
-
-
Lafontaine, I.1
Dujon, B.2
-
67
-
-
77955003456
-
Adaptive evolution of genes duplicated from the Drosophila pseudoobscura neo-X chromosome
-
10.1093/molbev/msq085 20351054
-
Adaptive evolution of genes duplicated from the Drosophila pseudoobscura neo-X chromosome. Meisel RP, Hilldorfer BB, Koch JL, Lockton S, Schaeffer SW, Mol Biol Evol 2010 27 1963 1978 10.1093/molbev/msq085 20351054
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1963-1978
-
-
Meisel, R.P.1
Hilldorfer, B.B.2
Koch, J.L.3
Lockton, S.4
Schaeffer, S.W.5
-
68
-
-
0036792156
-
Asymmetric functional divergence of duplicate genes in yeast
-
10.1093/oxfordjournals.molbev.a003998 12270902
-
Asymmetric functional divergence of duplicate genes in yeast. Wagner A, Mol Biol Evol 2002 19 1760 1768 10.1093/oxfordjournals.molbev.a003998 12270902
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1760-1768
-
-
Wagner, A.1
|