-
1
-
-
78651301328
-
And int'l nucleotide sequence database collaboration the sequence read archive
-
Jan
-
R. Leinonen, H. Sugawara, M. Shumway and Int'l Nucleotide Sequence Database Collaboration "The Sequence Read Archive." Nucleic Acids Research, vol. 39, pp. D19-D21, Jan. 2011.
-
(2011)
Nucleic Acids Research
, vol.39
-
-
Leinonen, R.1
Sugawara, H.2
Shumway, M.3
-
2
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short dna sequences to the human genome
-
B. Langmead, C. Trapnell, M. Pop, and S. Salzberg, "Ultrafast and Memory-Efficient Alignment of Short DNA Sequences to the Human Genome," Genome Biology, vol. 10, no. 3, p. R25, 2009.
-
(2009)
Genome Biology
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.4
-
3
-
-
78650275807
-
Compressing genomic sequence fragments using slimgene
-
C. Kozanitis, C. Saunders, S. Kruglyak, V. Bafna, and G. Varghese, "Compressing Genomic Sequence Fragments Using Slimgene," Research in Computational Molecular Biology, vol. 6044, pp. 310-324, 2010.
-
(2010)
Research in Computational Molecular Biology
, vol.6044
, pp. 310-324
-
-
Kozanitis, C.1
Saunders, C.2
Kruglyak, S.3
Bafna, V.4
Varghese, G.5
-
4
-
-
58349097721
-
Human genomes as email attachments
-
Jan
-
S. Christley, Y. Lu, C. Li, and X. Xie, "Human Genomes as Email Attachments," Bioinformatics, vol. 25, no. 2, pp. 274-275, Jan. 2009.
-
(2009)
Bioinformatics
, vol.25
, Issue.2
, pp. 274-275
-
-
Christley, S.1
Lu, Y.2
Li, C.3
Xie, X.4
-
5
-
-
77957765256
-
Data structures and compression algorithms for high-throughput sequencing technologies
-
article 514
-
K. Daily, P. Rigor, S. Christley, X. Xie, and P. Baldi, "Data Structures and Compression Algorithms for High-Throughput Sequencing Technologies," BMC Bioinformatics, vol. 11, no. 1, article 514, 2010.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.1
-
-
Daily, K.1
Rigor, P.2
Christley, S.3
Xie, X.4
Baldi, P.5
-
6
-
-
79955554401
-
Efficient storage of high throughput dna sequencing data using reference-based compression
-
May
-
M. Hsi-Yang Fritz, R. Leinonen, G. Cochrane, and E. Birney, "Efficient Storage of High Throughput DNA Sequencing Data Using Reference-Based Compression," Genome Research, vol. 21, no. 5, pp. 734-740, May 2011.
-
(2011)
Genome Research
, vol.21
, Issue.5
, pp. 734-740
-
-
Hsi-Yang Fritz, M.1
Leinonen, R.2
Cochrane, G.3
Birney, E.4
-
7
-
-
79952580139
-
Compression of dna sequence reads in fastq format
-
Mar.
-
S. Deorowicz and S. Grabowski, "Compression of DNA Sequence Reads in FASTQ Format," Bioinformatics, vol. 27, no. 6, pp. 860-862, Mar. 2011.
-
(2011)
Bioinformatics
, vol.27
, Issue.6
, pp. 860-862
-
-
Deorowicz, S.1
Grabowski, S.2
-
8
-
-
77955886068
-
G-sqz: Compact encoding of genomic sequence and quality data
-
July
-
W. Tembe, J. Lowey and E. Suh, "G-SQZ: Compact Encoding of Genomic Sequence and Quality Data," Bioinformatics, vol. 26, pp. 2192-2194, July 2010.
-
(2010)
Bioinformatics
, vol.26
, pp. 2192-2194
-
-
Tembe, W.1
Lowey, J.2
Suh, E.3
-
9
-
-
79958792741
-
Solidzipper: A high speed encoding method for the next-generation sequencing data
-
Y.J. Jeon, S.H. Park, S.M. Ahn, and H.J. Hwang, "Solidzipper: A High Speed Encoding Method for the Next-Generation Sequencing Data," Evol Bioinform Online, vol. 7, pp. 1-6, 2011.
-
(2011)
Evol Bioinform Online
, vol.7
, pp. 1-6
-
-
Jeon, Y.J.1
Park, S.H.2
Ahn, S.M.3
Hwang, H.J.4
-
10
-
-
0036947893
-
Dnacompress: Fast and effective dna sequence compression
-
X. Chen, M. Li, B. Ma, and J. Tromp, "DNACompress: Fast and Effective DNA Sequence Compression," Bioinformatics, vol. 18, pp. 1696-1698, 2002.
-
(2002)
Bioinformatics
, vol.18
, pp. 1696-1698
-
-
Chen, X.1
Li, M.2
Ma, B.3
Tromp, J.4
-
11
-
-
67649292737
-
Unlocking the secrets of the genome
-
June
-
S.E. Celniker, L.A.L. Dillon, M.B. Gerstein, K.C. Gunsalus, S. Henikoff, G.H. Karpen, M. Kellis, E.C. Lai, J.D. Lieb, D.M. MacAlpine, G. Micklem, F. Piano, M. Snyder, L. Stein, K.P. White, and R.H. Waterston, "Unlocking the Secrets of the Genome," Nature, vol. 459, no. 7249, pp. 927-930, June 2009.
-
(2009)
Nature
, vol.459
, Issue.7249
, pp. 927-930
-
-
Celniker, S.E.1
Dillon, L.A.L.2
Gerstein, M.B.3
Gunsalus, K.C.4
Henikoff, S.5
Karpen, G.H.6
Kellis, M.7
Lai, E.C.8
Lieb, J.D.9
Macalpine, D.M.10
Micklem, G.11
Piano, F.12
Snyder, M.13
Stein, L.14
White, K.P.15
Waterston, R.H.16
-
12
-
-
84887110130
-
-
M. Krueger, "Sharpziplib," http://www.sharpdevelop.net/ OpenSource/SharpZipLib/, 2010.
-
(2010)
Sharpziplib
-
-
Krueger, M.1
-
13
-
-
84887108558
-
-
I. Pavlov, "LZMA SDK," http://www.7-zip.org/sdk.html, 2011.
-
(2011)
LZMA SDK
-
-
Pavlov, I.1
-
14
-
-
84887105627
-
-
Picard, http://picard.sourceforge.net, 2012.
-
(2012)
Picard
-
-
-
15
-
-
68549104404
-
And 1000 genome project data processing subgroup the sequence alignment/map format and samtools
-
Aug
-
H. Li, B. Handsaker, A. Wysoker, T. Fennell, J. Ruan, N. Homer, G. Marth, G. Abecasis, R. Durbin, and 1000 Genome Project Data Processing Subgroup, "The Sequence Alignment/Map Format and SAMtools," Bioinformatics, vol. 25, no. 16, pp. 2078-2079, Aug. 2009.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
16
-
-
84887090580
-
-
C. Kolivas, "lrzip,"
-
C. Kolivas, "lrzip," http://freshmeat.net/projects/lrzip, 2011.
-
(2011)
-
-
|