메뉴 건너뛰기




Volumn 26, Issue 17, 2010, Pages 2192-2194

G-SQZ: Compact encoding of genomic sequence and quality data

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGY; COMPUTER PROGRAM; DNA SEQUENCE; INFORMATION PROCESSING; METHODOLOGY;

EID: 77955886068     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq346     Document Type: Article
Times cited : (70)

References (12)
  • 1
    • 13844291872 scopus 로고    scopus 로고
    • DNA sequence compression using the burrows-wheeler transform
    • Adjeroh, D. et al. (2002) DNA sequence compression using the burrows-wheeler transform. Proc. IEEE Comput. Soc. Bioinform. Conf., 1, 303-313.
    • (2002) Proc. IEEE Comput. Soc. Bioinform. Conf. , vol.1 , pp. 303-313
    • Adjeroh, D.1
  • 2
    • 67349209853 scopus 로고    scopus 로고
    • Next-generation DNA sequencing techniques
    • Ansorge, W.J. (2009) Next-generation DNA sequencing techniques. N. Biotechnol., 25, 195-203.
    • (2009) N. Biotechnol. , vol.25 , pp. 195-203
    • Ansorge, W.J.1
  • 3
    • 67649855126 scopus 로고    scopus 로고
    • Data structures and compression algorithms for genomic sequence data
    • Brandon, M.C. et al. (2009) Data structures and compression algorithms for genomic sequence data. Bioinformatics, 25, 1731-1738.
    • (2009) Bioinformatics , vol.25 , pp. 1731-1738
    • Brandon, M.C.1
  • 4
    • 0036947893 scopus 로고    scopus 로고
    • DNACompress: fast and effective DNA sequence compression
    • Chen, X. et al. (2002) DNACompress: fast and effective DNA sequence compression. Bioinformatics, 18, 1696-1698.
    • (2002) Bioinformatics , vol.18 , pp. 1696-1698
    • Chen, X.1
  • 5
    • 58349097721 scopus 로고    scopus 로고
    • Human genomes as email attachments
    • Christley, S. et al. (2009) Human genomes as email attachments. Bioinformatics, 25, 274-275.
    • (2009) Bioinformatics , vol.25 , pp. 274-275
    • Christley, S.1
  • 6
    • 77951226627 scopus 로고    scopus 로고
    • The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
    • Cock, P.J. et al. (2009) The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res., 38, 1767-1771.
    • (2009) Nucleic Acids Res , vol.38 , pp. 1767-1771
    • Cock, P.J.1
  • 7
    • 84938015047 scopus 로고
    • Amethod for the construction of minimum-redundancy codes
    • Huffman, D. (1952)Amethod for the construction of minimum-redundancy codes. Proc. IRE, 40, 1098-1102.
    • (1952) Proc. IRE , vol.40 , pp. 1098-1102
    • Huffman, D.1
  • 8
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li, H. et al. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 9
    • 52949096084 scopus 로고    scopus 로고
    • Next-generation DNA sequencing methods
    • Mardis, E.R. (2008) Next-generation DNA sequencing methods. Annu. Rev. Genomics Hum. Genet., 9, 387-402.
    • (2008) Annu. Rev. Genomics Hum. Genet. , vol.9 , pp. 387-402
    • Mardis, E.R.1
  • 10
    • 70549104863 scopus 로고    scopus 로고
    • NCBI. Available at (last accessed date February 2, 2010)
    • NCBI (2010) National Center for Biotechnology Info. Available at http://www.ncbi.nlm.nih.gov/sra (last accessed date February 2, 2010).
    • (2010) National Center for Biotechnology Info
  • 11
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure, J. and Ji, H. (2008) Next-generation DNA sequencing. Nat. Biotechnol., 26, 1135-1145.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 12
    • 70350645184 scopus 로고    scopus 로고
    • A lossless compression algorithm for DNA sequences
    • Soliman, T.H. et al. (2009) A lossless compression algorithm for DNA sequences. Int. J. Bioinform. Res. Appl., 5, 593-602.
    • (2009) Int. J. Bioinform. Res. Appl. , vol.5 , pp. 593-602
    • Soliman, T.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.