Compression of DNA sequence reads in FASTQ format

Bioinformatics

Volumn 27, Issue 6, 2011, Pages 860-862

  Deorowicz, Sebastian ^a   Grabowski, Szymon ^b  

^a SILESIAN UNIVERSITY OF TECHNOLOGY   (Poland)

^b LODZ UNIVERSITY OF TECHNOLOGY   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGY; DNA SEQUENCE; GENOMICS; INFORMATION PROCESSING; INTERNET; METHODOLOGY; NUCLEOTIDE SEQUENCE;

ALGORITHMS; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; DATA COMPRESSION; GENOMICS; INTERNET; SEQUENCE ANALYSIS, DNA;

EID: 79952580139     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr014     Document Type: Article

References (6)

1. Chen,X. et al. (2002) DNACompress: fast and effective DNA sequence compression. Bioinformatics, 18, 1696-1698.
2. Cock,P.J.A. et al. (2009) The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res., 38, 1767-1771.
3. Giancarlo,R. et al. (2009) Textual data compression in computational biology: a synopsis. Bioinformatics, 25, 1575-1586.
4. Grumbach,S. and Tahi,F. (1994) A new challenge for compression algorithms: genetic sequences. Inf. Process. Manage., 30, 875-886.
5. Kuruppu,S. et al. (2010) Relative Lempel-Ziv compression of genomes for large-scale storage and retrieval. Lect. Notes Comput. Sci., 6393, 201-206.
6. Tembe,W. et al. (2010) G-SQZ: compact encoding of genomic sequence and quality data. Bioinformatics, 26, 2192-2194.