-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium Initial sequencing and analysis of the human genome. Nature 2001, 409:860-921. International Human Genome Sequencing Consortium.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
2
-
-
35648976118
-
The diploid genome sequence of an individual human
-
Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AWC, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC. The diploid genome sequence of an individual human. PLoS Biol 2007, 5(10):e254.
-
(2007)
PLoS Biol
, vol.5
, Issue.10
-
-
Levy, S.1
Sutton, G.2
Ng, P.C.3
Feuk, L.4
Halpern, A.L.5
Walenz, B.P.6
Axelrod, N.7
Huang, J.8
Kirkness, E.F.9
Denisov, G.10
Lin, Y.11
MacDonald, J.R.12
Pang, A.W.C.13
Shago, M.14
Stockwell, T.B.15
Tsiamouri, A.16
Bafna, V.17
Bansal, V.18
Kravitz, S.A.19
Busam, D.A.20
Beeson, K.Y.21
McIntosh, T.C.22
Remington, K.A.23
Abril, J.F.24
Gill, J.25
Borman, J.26
Rogers, Y.H.27
Frazier, M.E.28
Scherer, S.W.29
Strausberg, R.L.30
Venter, J.C.31
more..
-
3
-
-
42249087308
-
The complete genome of an individual by massively parallel DNA sequencing
-
Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, Rothberg JM. The complete genome of an individual by massively parallel DNA sequencing. Nature 2008, 452(7189):872-6.
-
(2008)
Nature
, vol.452
, Issue.7189
, pp. 872-876
-
-
Wheeler, D.A.1
Srinivasan, M.2
Egholm, M.3
Shen, Y.4
Chen, L.5
McGuire, A.6
He, W.7
Chen, Y.J.8
Makhijani, V.9
Roth, G.T.10
Gomes, X.11
Tartaro, K.12
Niazi, F.13
Turcotte, C.L.14
Irzyk, G.P.15
Lupski, J.R.16
Chinault, C.17
Song, X.Z.18
Liu, Y.19
Yuan, Y.20
Nazareth, L.21
Qin, X.22
Muzny, D.M.23
Margulies, M.24
Weinstock, G.M.25
Gibbs, R.A.26
Rothberg, J.M.27
more..
-
4
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, Boutell JM, Bryant J, Carter RJ, Cheetham RK, Cox AJ, Ellis DJ, Flatbush MR, Gormley NA, Humphray SJ, Irving LJ, Karbelashvili MS, Kirk SM, Li H, Liu X, Maisinger KS, Murray LJ, Obradovic B, Ost T, Parkinson ML, Pratt MR, Rasolonjatovo IMJ, Reed MT, Rigatti R, Rodighiero C, Ross MT, Sabot A, Sankar SV, Scally A, Schroth GP, Smith ME, Smith VP, Spiridou A, Torrance PE, Tzonev SS, Vermaas EH, Walter K, Wu X, Zhang L, Alam MD, Anastasi C, Aniebo IC, Bailey DMD, Bancarz IR, Banerjee S, Barbour SG, Baybayan PA, Benoit VA, Benson KF, Bevis C, Black PJ, Boodhun A, Brennan JS, Bridgham JA, Brown RC, Brown AA, Buermann DH, Bundu AA, Burrows JC, Carter NP, Castillo N, Catenazzi MCE, Chang S, Cooley RN, Crake NR, Dada OO, Diakoumakos KD, Dominguez-Fernandez B, Earnshaw DJ, Egbujor UC, Elmore DW, Etchin SS, Ewan MR, Fedurco M, Fraser LJ, Fajardo KVF, Furey WS, George D, Gietzen KJ, Goddard CP, Golda GS, Granieri PA, Green DE, Gustafson DL, Hansen NF, Harnish K, Haudenschild CD, Heyer NI, Hims MM, Ho JT, Horgan AM, Hoschler K, Hurwitz S, Ivanov DV, Johnson MQ, James T, Jones TAH, Kang GD, Kerelska TH, Kersey AD, Khrebtukova I, Kindwall AP, Kingsbury Z, Kokko-Gonzales PI, Kumar A, Laurent MA, Lawley CT, Lee SE, Lee X, Liao AK, Loch JA, Lok M, Luo S, Mammen RM, Martin JW, Mccauley PG, Mcnitt P, Mehta P, Moon KW, Mullens JW, Newington T, Ning Z, Ng BL, Novo SM, O'neill MJ, Osborne MA, Osnowski A, Ostadan O, Paraschos LL, Pickering L, Pike AC, Pike AC, Pinkard DC, Pliskin DP, Podhasky J, Quijano VJ, Raczy C, Rae VH, Rawlings SR, Rodriguez AC, Roe PM, Rogers J, Bacigalupo MCR, Romanov N, Romieu A, Roth RK, Rourke NJ, Ruediger ST, Rusman E, Sanches-Kuiper RM, Schenker MR, Seoane JM, Shaw RJ, Shiver MK, Short SW, Sizto NL, Sluis JP, Smith MA, Sohna JES, Spence EJ, Stevens K, Sutton N, Szajkowski L, Tregidgo CL, Turcatti G, Vandevondele S, Verhovsky Y, Virk SM, Wakelin S, Walcott GC, Wang J, Worsley GJ, Yan J, Yau L, Zuerlein M, Rogers J, Mullikin JC, Hurles ME, Mccooke NJ, West JS, Oaks FL, Lundberg PL, Klenerman D, Durbin R, Smith AJ. Accurate whole human genome sequencing using reversible terminator chemistry. Nature 2008, 456(7218):53-59.
-
(2008)
Nature
, vol.456
, Issue.7218
, pp. 53-59
-
-
Bentley, D.R.1
Balasubramanian, S.2
Swerdlow, H.P.3
Smith, G.P.4
Milton, J.5
Brown, C.G.6
Hall, K.P.7
Evers, D.J.8
Barnes, C.L.9
Bignell, H.R.10
Boutell, J.M.11
Bryant, J.12
Carter, R.J.13
Cheetham, R.K.14
Cox, A.J.15
Ellis, D.J.16
Flatbush, M.R.17
Gormley, N.A.18
Humphray, S.J.19
Irving, L.J.20
Karbelashvili, M.S.21
Kirk, S.M.22
Li, H.23
Liu, X.24
Maisinger, K.S.25
Murray, L.J.26
Obradovic, B.27
Ost, T.28
Parkinson, M.L.29
Pratt, M.R.30
Rasolonjatovo, I.M.J.31
Reed, M.T.32
Rigatti, R.33
Rodighiero, C.34
Ross, M.T.35
Sabot, A.36
Sankar, S.V.37
Scally, A.38
Schroth, G.P.39
Smith, M.E.40
Smith, V.P.41
Spiridou, A.42
Torrance, P.E.43
Tzonev, S.S.44
Vermaas, E.H.45
Walter, K.46
Wu, X.47
Zhang, L.48
Alam, M.D.49
Anastasi, C.50
Aniebo, I.C.51
Bailey, D.M.D.52
Bancarz, I.R.53
Banerjee, S.54
Barbour, S.G.55
Baybayan, P.A.56
Benoit, V.A.57
Benson, K.F.58
Bevis, C.59
Black, P.J.60
Boodhun, A.61
Brennan, J.S.62
Bridgham, J.A.63
Brown, R.C.64
Brown, A.A.65
Buermann, D.H.66
Bundu, A.A.67
Burrows, J.C.68
Carter, N.P.69
Castillo, N.70
Catenazzi, M.C.E.71
Chang, S.72
Cooley, R.N.73
Crake, N.R.74
Dada, O.O.75
Diakoumakos, K.D.76
Dominguez-Fernandez, B.77
Earnshaw, D.J.78
Egbujor, U.C.79
Elmore, D.W.80
Etchin, S.S.81
Ewan, M.R.82
Fedurco, M.83
Fraser, L.J.84
Fajardo, K.V.F.85
Furey, W.S.86
George, D.87
Gietzen, K.J.88
Goddard, C.P.89
Golda, G.S.90
Granieri, P.A.91
Green, D.E.92
Gustafson, D.L.93
Hansen, N.F.94
Harnish, K.95
Haudenschild, C.D.96
Heyer, N.I.97
Hims, M.M.98
Ho, J.T.99
more..
-
5
-
-
55549097849
-
The diploid genome sequence of an Asian individual
-
Wang J, Wang W, Li R, Li Y, Tian G, Goodman L, Fan W, Zhang J, Li J, Zhang J, Guo Y, Feng B, Li H, Lu Y, Fang X, Liang H, Du Z, Li D, Zhao Y, Hu Y, Yang Z, Zheng H, Hellmann I, Inouye M, Pool J, Yi X, Zhao J, Duan J, Zhou Y, Qin J, Ma L, Li G, Yang Z, Zhang G, Yang B, Yu C, Liang F, Li W, Li S, Li D, Ni P, Ruan J, Li Q, Zhu H, Liu D, Lu Z, Li N, Guo G, Zhang J, Ye J, Fang L, Hao Q, Chen Q, Liang Y, Su Y, San A, Ping C, Yang S, Chen F, Li L, Zhou K, Zheng H, Ren Y, Yang L, Gao Y, Yang G, Li Z, Feng X, Kristiansen K, Wong GKS, Nielsen R, Durbin R, Bolund L, Zhang X, Li S, Yang H, Wang J. The diploid genome sequence of an Asian individual. Nature 2008, 456(7218):60-5.
-
(2008)
Nature
, vol.456
, Issue.7218
, pp. 60-65
-
-
Wang, J.1
Wang, W.2
Li, R.3
Li, Y.4
Tian, G.5
Goodman, L.6
Fan, W.7
Zhang, J.8
Li, J.9
Zhang, J.10
Guo, Y.11
Feng, B.12
Li, H.13
Lu, Y.14
Fang, X.15
Liang, H.16
Du, Z.17
Li, D.18
Zhao, Y.19
Hu, Y.20
Yang, Z.21
Zheng, H.22
Hellmann, I.23
Inouye, M.24
Pool, J.25
Yi, X.26
Zhao, J.27
Duan, J.28
Zhou, Y.29
Qin, J.30
Ma, L.31
Li, G.32
Yang, Z.33
Zhang, G.34
Yang, B.35
Yu, C.36
Liang, F.37
Li, W.38
Li, S.39
Li, D.40
Ni, P.41
Ruan, J.42
Li, Q.43
Zhu, H.44
Liu, D.45
Lu, Z.46
Li, N.47
Guo, G.48
Zhang, J.49
Ye, J.50
Fang, L.51
Hao, Q.52
Chen, Q.53
Liang, Y.54
Su, Y.55
San, A.56
Ping, C.57
Yang, S.58
Chen, F.59
Li, L.60
Zhou, K.61
Zheng, H.62
Ren, Y.63
Yang, L.64
Gao, Y.65
Yang, G.66
Li, Z.67
Feng, X.68
Kristiansen, K.69
Wong, G.K.S.70
Nielsen, R.71
Durbin, R.72
Bolund, L.73
Zhang, X.74
Li, S.75
Yang, H.76
Wang, J.77
more..
-
6
-
-
38549161042
-
A Plan to Capture Human diversity in 1000 Genomes
-
Kaiser J. A Plan to Capture Human diversity in 1000 Genomes. Science 2008, 319:395.
-
(2008)
Science
, vol.319
, pp. 395
-
-
Kaiser, J.1
-
7
-
-
33645072440
-
The Race for the $1000 Genome
-
Service RF. The Race for the $1000 Genome. Science 2006, 311:1544-1546.
-
(2006)
Science
, vol.311
, pp. 1544-1546
-
-
Service, R.F.1
-
8
-
-
34547630151
-
ChIP-seq: welcome to the new frontier
-
Mardis ER. ChIP-seq: welcome to the new frontier. Nature Methods 2007, 4:613-614.
-
(2007)
Nature Methods
, vol.4
, pp. 613-614
-
-
Mardis, E.R.1
-
9
-
-
34249723655
-
Advanced Sequencing Technologies and their Wider Impact in Microbiology
-
Hall N. Advanced Sequencing Technologies and their Wider Impact in Microbiology. The Journal of Experimental Biology 2007, 209:1518-1525.
-
(2007)
The Journal of Experimental Biology
, vol.209
, pp. 1518-1525
-
-
Hall, N.1
-
10
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li H, Ruan J, Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 2008, 18(11):1851-8.
-
(2008)
Genome Res
, vol.18
, Issue.11
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
11
-
-
54949110994
-
ZOOM! Zillions of oligos mapped
-
Lin H, Zhang Z, Zhang MQ, Ma B, Li M. ZOOM! Zillions of oligos mapped. Bioinformatics 2008, 24(21):2431-7.
-
(2008)
Bioinformatics
, vol.24
, Issue.21
, pp. 2431-2437
-
-
Lin, H.1
Zhang, Z.2
Zhang, M.Q.3
Ma, B.4
Li, M.5
-
12
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg S. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 2009, 10(3):R25., http://genomebiology.com/2009/10/3/R25
-
(2009)
Genome Biology
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.4
-
13
-
-
0000100455
-
A new challenge for compression algorithms: Genetic sequences
-
Grumbach S, Tahi F. A new challenge for compression algorithms: Genetic sequences. Information Processing & Management 1994, 30(6):875-886.
-
(1994)
Information Processing & Management
, vol.30
, Issue.6
, pp. 875-886
-
-
Grumbach, S.1
Tahi, F.2
-
15
-
-
2642584062
-
Off-Line Compression by Greedy Textual Substitution
-
Apostolico A, Lonardi S. Off-Line Compression by Greedy Textual Substitution. Proceedings of the IEEE 2000, 88(11):1733-1744.
-
(2000)
Proceedings of the IEEE
, vol.88
, Issue.11
, pp. 1733-1744
-
-
Apostolico, A.1
Lonardi, S.2
-
16
-
-
0036947893
-
DNACompress: fast and effective DNA sequence compression
-
Chen X, Li M, Ma B, Tromp J. DNACompress: fast and effective DNA sequence compression. Bioinformatics 2002, 18:1696-1698.
-
(2002)
Bioinformatics
, vol.18
, pp. 1696-1698
-
-
Chen, X.1
Li, M.2
Ma, B.3
Tromp, J.4
-
17
-
-
8344261403
-
A simple and fast DNA compressor
-
Manzini G, Rastero M. A simple and fast DNA compressor. Softw Pract Exper 2004, 34(14):1397-1411.
-
(2004)
Softw Pract Exper
, vol.34
, Issue.14
, pp. 1397-1411
-
-
Manzini, G.1
Rastero, M.2
-
18
-
-
45249110222
-
Compressing DNA sequence databases with coil
-
White WTJ, Hendy MD. Compressing DNA sequence databases with coil. BMC Bioinformatics 2008, 9:242.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 242
-
-
White, W.T.J.1
Hendy, M.D.2
-
19
-
-
58349097721
-
Human Genomes as Email Attachments
-
Christley S, Lu Y, Li C, Xie X. Human Genomes as Email Attachments. Bioinformatics 2008, 25:274-275.
-
(2008)
Bioinformatics
, vol.25
, pp. 274-275
-
-
Christley, S.1
Lu, Y.2
Li, C.3
Xie, X.4
-
20
-
-
0344990741
-
The gzip home page
-
The gzip home page. , http://www.gzip.org
-
-
-
-
21
-
-
0003547443
-
The Theory of Information and Coding
-
Reading, MA: Addison-Wesley Publishing Company
-
McEliece RJ. The Theory of Information and Coding. 1977, Reading, MA: Addison-Wesley Publishing Company.
-
(1977)
-
-
McEliece, R.J.1
-
22
-
-
84889281816
-
Elements of Information Theory
-
New York: John Wiley
-
Cover TM, Thomas JA. Elements of Information Theory. 1991, New York: John Wiley.
-
(1991)
-
-
Cover, T.M.1
Thomas, J.A.2
-
24
-
-
0016486577
-
Universal Codeword Sets and Representations of the Integers
-
Elias P. Universal Codeword Sets and Representations of the Integers. IEEE Transactions on Information Theory 1975, 21(2):194-203.
-
(1975)
IEEE Transactions on Information Theory
, vol.21
, Issue.2
, pp. 194-203
-
-
Elias, P.1
-
25
-
-
37249011239
-
Lossless Compression of Chemical Fingerprints Using Integer Entropy Codes Improves Storage and Retrieval
-
Baldi P, Benz RW, Hirschberg D, Swamidass S. Lossless Compression of Chemical Fingerprints Using Integer Entropy Codes Improves Storage and Retrieval. Journal of Chemical Information and Modeling 2007, 47(6):2098-2109.
-
(2007)
Journal of Chemical Information and Modeling
, vol.47
, Issue.6
, pp. 2098-2109
-
-
Baldi, P.1
Benz, R.W.2
Hirschberg, D.3
Swamidass, S.4
-
26
-
-
84938015047
-
A method for the construction of minimum redundancy codes
-
Huffman D. A method for the construction of minimum redundancy codes. Proc IRE 1952, 40:1098-1101.
-
(1952)
Proc IRE
, vol.40
, pp. 1098-1101
-
-
Huffman, D.1
-
27
-
-
0004990868
-
Binary Interpolative Coding for Effective Index Compression
-
Moffat A, Stuiver L. Binary Interpolative Coding for Effective Index Compression. Inf Retr 2000, 3:25-47.
-
(2000)
Inf Retr
, vol.3
, pp. 25-47
-
-
Moffat, A.1
Stuiver, L.2
-
28
-
-
33745343747
-
Binary codes for locally homogeneous sequences
-
Moffat A, Anh V. Binary codes for locally homogeneous sequences. Information Processing Letters 2006, 99:175-180.
-
(2006)
Information Processing Letters
, vol.99
, pp. 175-180
-
-
Moffat, A.1
Anh, V.2
-
29
-
-
67649832755
-
Effective Compression of Monotone and Quasi-Monotone Sequences of Integers
-
Los Alamitos, CA: IEEE Computer Society Press,
-
Hirschberg DS, Baldi P. Effective Compression of Monotone and Quasi-Monotone Sequences of Integers. Proceedings of the 2008 Data Compression Conference (DCC 08) 2008, Los Alamitos, CA: IEEE Computer Society Press, .
-
(2008)
Proceedings of the 2008 Data Compression Conference (DCC 08)
-
-
Hirschberg, D.S.1
Baldi, P.2
-
32
-
-
37849022524
-
Encyclopedia of Algorithms
-
Secaucus, NJ, USA: Springer-Verlag New York, Inc
-
Kao MY. Encyclopedia of Algorithms. 2007, Secaucus, NJ, USA: Springer-Verlag New York, Inc.
-
(2007)
-
-
Kao, M.Y.1
-
33
-
-
0003756969
-
Managing Gigabytes: Compressing and Indexing Documents and Images
-
Morgan Kauffman, Second
-
Witten I, Moffat A, Cell TB. Managing Gigabytes: Compressing and Indexing Documents and Images. 1999, Morgan Kauffman, Second.
-
(1999)
-
-
Witten, I.1
Moffat, A.2
Cell, T.B.3
-
34
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson DS, Mortazavi A, Myers RM, Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science 2007, 316:1497-1502.
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
35
-
-
58149194602
-
The YH database: the first Asian diploid genome database
-
Li G, Ma L, Song C, Yang Z, Wang X, Huang H, Li Y, Li R, Zhang X, Yang H, Wang J, Wang J. The YH database: the first Asian diploid genome database. Nucleic Acids Res 2009, 37:D1025-8.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Li, G.1
Ma, L.2
Song, C.3
Yang, Z.4
Wang, X.5
Huang, H.6
Li, Y.7
Li, R.8
Zhang, X.9
Yang, H.10
Wang, J.11
Wang, J.12
|