메뉴 건너뛰기




Volumn 27, Issue 3, 2013, Pages 610-618

Genome-wide profiling of methylation identifies novel targets with aberrant hypermethylation and reduced expression in low-risk myelodysplastic syndromes

Author keywords

apoptosis; BCL2; ETS1 transcription factor targets; gene expression profile; low risk MDS; methylation

Indexed keywords

DICER; DICER1; DNA; INTERLEUKIN 27 RECEPTOR ALPHA; INTERLEUKIN RECEPTOR; MESSENGER RNA; MICRORNA; PROTEIN BCL 2; TRANSCRIPTION FACTOR ETS 1; UNCLASSIFIED DRUG;

EID: 84875223910     PISSN: 08876924     EISSN: 14765551     Source Type: Journal    
DOI: 10.1038/leu.2012.253     Document Type: Article
Times cited : (30)

References (51)
  • 1
    • 13444269356 scopus 로고    scopus 로고
    • Myelodysplastic syndromes-coping with ineffective hematopoiesis
    • Cazzola M, Malcovati L. Myelodysplastic syndromes-coping with ineffective hematopoiesis. N Engl J Med 2005; 352: 536-538.
    • (2005) N Engl J Med , vol.352 , pp. 536-538
    • Cazzola, M.1    Malcovati, L.2
  • 2
    • 70349256226 scopus 로고    scopus 로고
    • The 2008.revision of the World Health Organization (WHO) classification of myeloid neoplasms and acute leukemia: Rationale and important changes
    • Vardiman JW, Thiele J, Arber DA, Brunning RD, Borowitz MJ, Porwit A et al. The 2008. revision of the World Health Organization (WHO) classification of myeloid neoplasms and acute leukemia: rationale and important changes. Blood 2009; 114: 937-951.
    • (2009) Blood , vol.114 , pp. 937-951
    • Vardiman, J.W.1    Thiele, J.2    Arber, D.A.3    Brunning, R.D.4    Borowitz, M.J.5    Porwit, A.6
  • 3
    • 50849085449 scopus 로고    scopus 로고
    • Myelodysplastic syndromes: Molecular pathogenesis and genomic changes
    • Nolte F, Hofmann WK. Myelodysplastic syndromes: molecular pathogenesis and genomic changes. Ann Hematol 2008; 87: 777-795.
    • (2008) Ann Hematol , vol.87 , pp. 777-795
    • Nolte, F.1    Hofmann, W.K.2
  • 4
    • 0345357773 scopus 로고    scopus 로고
    • Gene silencing in cancer in association with promoter hypermethylation
    • Herman JG, Baylin SB. Gene silencing in cancer in association with promoter hypermethylation. N Engl J Med 2003; 349: 2042-2054.
    • (2003) N Engl J Med , vol.349 , pp. 2042-2054
    • Herman, J.G.1    Baylin, S.B.2
  • 5
    • 40849139208 scopus 로고    scopus 로고
    • Epigenetics in cancer
    • Esteller M. Epigenetics in cancer. N Engl J Med 2008; 358: 1148-1159.
    • (2008) N Engl J Med , vol.358 , pp. 1148-1159
    • Esteller, M.1
  • 6
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • Jenuwein T, Allis CD. Translating the histone code. Science 2001; 293: 1074-1080.
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 8
    • 46749153406 scopus 로고    scopus 로고
    • An integrative genomic and epigenomic approach for the study of transcriptional regulation
    • Figueroa ME, Reimers M, Thompson RF, Ye K, Li Y, Selzer RR et al. An integrative genomic and epigenomic approach for the study of transcriptional regulation. PLoS One 2008; 3: e1882.
    • (2008) PLoS One , vol.3
    • Figueroa, M.E.1    Reimers, M.2    Thompson, R.F.3    Ye, K.4    Li, Y.5    Selzer, R.R.6
  • 9
    • 0032960181 scopus 로고    scopus 로고
    • Cancer epigenetics comes of age
    • Jones PA, Laird PW. Cancer epigenetics comes of age. Nat Genet 1999; 21: 163-167.
    • (1999) Nat Genet , vol.21 , pp. 163-167
    • Jones, P.A.1    Laird, P.W.2
  • 11
    • 33847065486 scopus 로고    scopus 로고
    • The epigenomics of cancer
    • Jones PA, Baylin SB. The epigenomics of cancer. Cell 2007; 128: 683-692.
    • (2007) Cell , vol.128 , pp. 683-692
    • Jones, P.A.1    Baylin, S.B.2
  • 13
    • 70349249936 scopus 로고    scopus 로고
    • Microarraybased classifiers and prognosis models identify subgroups with distinct clinical outcomes and high risk of AML transformation of myelodysplastic syndrome
    • Mills KI, Kohlmann A, Williams PM, Wieczorek L, Liu WM, Li R et al. Microarraybased classifiers and prognosis models identify subgroups with distinct clinical outcomes and high risk of AML transformation of myelodysplastic syndrome. Blood 2009; 114: 1063-1072.
    • (2009) Blood , vol.114 , pp. 1063-1072
    • Mills, K.I.1    Kohlmann, A.2    Williams, P.M.3    Wieczorek, L.4    Liu, W.M.5    Li, R.6
  • 15
    • 74049098354 scopus 로고    scopus 로고
    • Relationship of differential gene expression profiles in CD34\+ myelodysplastic syndrome marrow cells to disease subtype and progression
    • Sridhar K, Ross DT, Tibshirani R, Butte AJ, Greenberg PL. Relationship of differential gene expression profiles in CD34\+ myelodysplastic syndrome marrow cells to disease subtype and progression. Blood 2009; 114: 4847-4858.
    • (2009) Blood , vol.114 , pp. 4847-4858
    • Sridhar, K.1    Ross, D.T.2    Tibshirani, R.3    Butte, A.J.4    Greenberg, P.L.5
  • 16
    • 77449149371 scopus 로고    scopus 로고
    • DNA methylation predicts survival and response to therapy in patients with myelodysplastic syndromes
    • Shen L, Kantarjian H, Guo Y, Lin E, Shan J, Huang X et al. DNA methylation predicts survival and response to therapy in patients with myelodysplastic syndromes. J Clin Oncol 2010; 28: 605-613.
    • (2010) J Clin Oncol , vol.28 , pp. 605-613
    • Shen, L.1    Kantarjian, H.2    Guo, Y.3    Lin, E.4    Shan, J.5    Huang, X.6
  • 17
  • 18
    • 77955134007 scopus 로고    scopus 로고
    • Clinical utility of microarray-based gene expression profiling in the diagnosis and subclassification of leukemia: Report from the International Microarray Innovations in Leukemia Study Group
    • Haferlach T, Kohlmann A, Wieczorek L, Basso G, Kronnie GT, Bene MC et al. Clinical utility of microarray-based gene expression profiling in the diagnosis and subclassification of leukemia: report from the International Microarray Innovations in Leukemia Study Group. J Clin Oncol 2010; 28: 2529-2537.
    • (2010) J Clin Oncol , vol.28 , pp. 2529-2537
    • Haferlach, T.1    Kohlmann, A.2    Wieczorek, L.3    Basso, G.4    Kronnie, G.T.5    Bene, M.C.6
  • 19
    • 77951531009 scopus 로고    scopus 로고
    • GATExplorer: Genomic and transcriptomic explorer; Mapping expression probes to gene loci, transcripts, exons and ncRNAs
    • Risueno A, Fontanillo C, Dinger ME, De Las RJ. GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs. BMC Bioinformatics 2010; 11: 221.
    • (2010) BMC Bioinformatics , vol.11 , pp. 221
    • Risueno, A.1    Fontanillo, C.2    Dinger, M.E.3    De Las, R.J.4
  • 21
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher VG, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 2001; 98: 5116-5121.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 23
    • 0026546877 scopus 로고
    • A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
    • Frommer M, McDonald LE, Millar DS, Collis CM, Watt F, Grigg GW et al. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc Natl Acad Sci USA 1992; 89: 1827-1831.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 1827-1831
    • Frommer, M.1    McDonald, L.E.2    Millar, D.S.3    Collis, C.M.4    Watt, F.5    Grigg, G.W.6
  • 24
    • 34547589578 scopus 로고    scopus 로고
    • DAVID Bioinformatics Resources: Expanded annotation database and novel algorithms to better extract biology from large gene lists
    • Huang dW, Sherman BT, Tan Q, Kir J, Liu D, Bryant D et al. DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res 2007; 35: W169-W175.
    • (2007) Nucleic Acids Res , vol.35
    • Dw, H.1    Sherman, B.T.2    Tan, Q.3    Kir, J.4    Liu, D.5    Bryant, D.6
  • 25
    • 20144370200 scopus 로고    scopus 로고
    • OPOSSUM: Identification of over-represented transcription factor binding sites in co-expressed genes
    • Ho Sui SJ, Mortimer JR, Arenillas DJ, Brumm J, Walsh CJ, Kennedy BP et al. oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes. Nucleic Acids Res 2005; 33: 3154-3164.
    • (2005) Nucleic Acids Res , vol.33 , pp. 3154-3164
    • Ho Sui, S.J.1    Mortimer, J.R.2    Arenillas, D.J.3    Brumm, J.4    Walsh, C.J.5    Kennedy, B.P.6
  • 27
    • 67849114236 scopus 로고    scopus 로고
    • Pscan: Finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes
    • Zambelli F, Pesole G, Pavesi G. Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes. Nucleic Acids Res 2009; 37: W247-W252.
    • (2009) Nucleic Acids Res , vol.37
    • Zambelli, F.1    Pesole, G.2    Pavesi, G.3
  • 28
    • 77954308980 scopus 로고    scopus 로고
    • TFM-Explorer: Mining cis-regulatory regions in genomes
    • Tonon L, Touzet H, Varre JS. TFM-Explorer: mining cis-regulatory regions in genomes. Nucleic Acids Res 2010; 38: W286-W292.
    • (2010) Nucleic Acids Res , vol.38
    • Tonon, L.1    Touzet, H.2    Varre, J.S.3
  • 29
    • 30844462355 scopus 로고    scopus 로고
    • The fundamental role of epigenetics in hematopoietic malignancies
    • Galm O, Herman JG, Baylin SB. The fundamental role of epigenetics in hematopoietic malignancies. Blood Rev 2006; 20: 1-13.
    • (2006) Blood Rev , vol.20 , pp. 1-13
    • Galm, O.1    Herman, J.G.2    Baylin, S.B.3
  • 31
    • 33745615399 scopus 로고    scopus 로고
    • Gene expression profiles of CD34\+ cells in myelodysplastic syndromes: Involvement of interferon-stimulated genes and correlation to FAB subtype and karyotype
    • Pellagatti A, Cazzola M, Giagounidis AA, Malcovati L, Porta MG, Killick S et al. Gene expression profiles of CD34\+ cells in myelodysplastic syndromes: involvement of interferon-stimulated genes and correlation to FAB subtype and karyotype. Blood 2006; 108: 337-345.
    • (2006) Blood , vol.108 , pp. 337-345
    • Pellagatti, A.1    Cazzola, M.2    Giagounidis, A.A.3    Malcovati, L.4    Porta, M.G.5    Killick, S.6
  • 32
    • 58149092194 scopus 로고    scopus 로고
    • Growth differentiation factor 15 production is necessary for normal erythroid differentiation and is increased in refractory anaemia with ring-sideroblasts 4
    • Ramirez JM, Schaad O, Durual S, Cossali D, Docquier M, Beris P et al. Growth differentiation factor 15 production is necessary for normal erythroid differentiation and is increased in refractory anaemia with ring-sideroblasts 4. Br J Haematol 2009; 144: 251-262.
    • (2009) Br J Haematol , vol.144 , pp. 251-262
    • Ramirez, J.M.1    Schaad, O.2    Durual, S.3    Cossali, D.4    Docquier, M.5    Beris, P.6
  • 33
    • 77950943405 scopus 로고    scopus 로고
    • Deregulated gene expression pathways in myelodysplastic syndrome hematopoietic stem cells
    • Pellagatti A, Cazzola M, Giagounidis A, Perry J, Malcovati L, la Porta MG et al. Deregulated gene expression pathways in myelodysplastic syndrome hematopoietic stem cells. Leukemia 2010; 24: 756-764.
    • (2010) Leukemia , vol.24 , pp. 756-764
    • Pellagatti, A.1    Cazzola, M.2    Giagounidis, A.3    Perry, J.4    Malcovati, L.5    La Porta, M.G.6
  • 34
    • 68149141496 scopus 로고    scopus 로고
    • Differential gene expression of bone marrow CD34\+ cells in early and advanced myelodysplastic syndrome
    • Vasikova A, Budinska E, Belickova M, Cermak J, Bruchova H. Differential gene expression of bone marrow CD34\+ cells in early and advanced myelodysplastic syndrome. Neoplasma 2009; 56: 335-342.
    • (2009) Neoplasma , vol.56 , pp. 335-342
    • Vasikova, A.1    Budinska, E.2    Belickova, M.3    Cermak, J.4    Bruchova, H.5
  • 35
    • 0035379085 scopus 로고    scopus 로고
    • The role of apoptosis in the pathogenesis of the myelodysplastic syndromes
    • Parker JE, Mufti GJ. The role of apoptosis in the pathogenesis of the myelodysplastic syndromes. Int J Hematol 2001; 73: 416-428.
    • (2001) Int J Hematol , vol.73 , pp. 416-428
    • Parker, J.E.1    Mufti, G.J.2
  • 36
    • 77956905086 scopus 로고    scopus 로고
    • Detailed analysis of expression and promoter methylation status of apoptosis-related genes in prostate cancer
    • Carvalho JR, Filipe L, Costa VL, Ribeiro FR, Martins AT, Teixeira MR et al. Detailed analysis of expression and promoter methylation status of apoptosis-related genes in prostate cancer. Apoptosis 2010; 15: 956-965.
    • (2010) Apoptosis , vol.15 , pp. 956-965
    • Carvalho, J.R.1    Filipe, L.2    Costa, V.L.3    Ribeiro, F.R.4    Martins, A.T.5    Teixeira, M.R.6
  • 38
    • 38549084327 scopus 로고    scopus 로고
    • DNA methylation profiles of gastric carcinoma characterized by quantitative DNA methylation analysis
    • Kang GH, Lee S, Cho NY, Gandamihardja T, Long TI, Weisenberger DJ et al. DNA methylation profiles of gastric carcinoma characterized by quantitative DNA methylation analysis. Lab Invest 2008; 88: 161-170.
    • (2008) Lab Invest , vol.88 , pp. 161-170
    • Kang, G.H.1    Lee, S.2    Cho, N.Y.3    Gandamihardja, T.4    Long, T.I.5    Weisenberger, D.J.6
  • 40
    • 0026323801 scopus 로고
    • High-affinity DNA. protein interactions of the cellular ETS1 protein: The determination of the ETS binding motif
    • Fisher RJ, Mavrothalassitis G, Kondoh A, Papas TS, High-affinity DNA. protein interactions of the cellular ETS1 protein: the determination of the ETS binding motif. Oncogene 1991; 6: 2249-2254.
    • (1991) Oncogene , vol.6 , pp. 2249-2254
    • Fisher, R.J.1    Mavrothalassitis, G.2    Kondoh, A.3    Papas, T.S.4
  • 41
    • 27544515095 scopus 로고    scopus 로고
    • ETS transcription factors and their emerging roles in human cancer
    • Seth A, Watson DK. ETS transcription factors and their emerging roles in human cancer. Eur J Cancer 2005; 41: 2462-2478.
    • (2005) Eur J Cancer , vol.41 , pp. 2462-2478
    • Seth, A.1    Watson, D.K.2
  • 42
    • 16844384594 scopus 로고    scopus 로고
    • Stromelysin 3, Ets-1, and vascular endothelial growth factor expression in oral precancerous and cancerous lesions: Correlation with microvessel density, progression, and prognosis
    • Arora S, Kaur J, Sharma C, Mathur M, Bahadur S, Shukla NK et al. Stromelysin 3, Ets-1, and vascular endothelial growth factor expression in oral precancerous and cancerous lesions: correlation with microvessel density, progression, and prognosis. Clin Cancer Res 2005; 11: 2272-2284.
    • (2005) Clin Cancer Res , vol.11 , pp. 2272-2284
    • Arora, S.1    Kaur, J.2    Sharma, C.3    Mathur, M.4    Bahadur, S.5    Shukla, N.K.6
  • 44
    • 0037028211 scopus 로고    scopus 로고
    • Expression of the transcription factor Ets-1 is an independent prognostic marker for relapse-free survival in breast cancer
    • Span PN, Manders P, Heuvel JJ, Thomas CM, Bosch RR, Beex LV et al. Expression of the transcription factor Ets-1 is an independent prognostic marker for relapse-free survival in breast cancer. Oncogene 2002; 21: 8506-8509.
    • (2002) Oncogene , vol.21 , pp. 8506-8509
    • Span, P.N.1    Manders, P.2    Heuvel, J.J.3    Thomas, C.M.4    Bosch, R.R.5    Beex, L.V.6
  • 45
    • 58149308302 scopus 로고    scopus 로고
    • Silencing of the CKII alpha and CKII alpha' genes during cellular senescence is mediated by DNA methylation
    • Kim EK, Kang JY, Rho YH, Kim YS, Kim DS, Bae YS. Silencing of the CKII alpha and CKII alpha' genes during cellular senescence is mediated by DNA methylation. Gene 2009; 431: 55-60.
    • (2009) Gene , vol.431 , pp. 55-60
    • Kim, E.K.1    Kang, J.Y.2    Rho, Y.H.3    Kim, Y.S.4    Kim, D.S.5    Bae, Y.S.6
  • 46
    • 42049083776 scopus 로고    scopus 로고
    • JAK2 activation in myeloproliferative neoplasms: A potential role for heterodimeric receptors
    • Reuther GW. JAK2 activation in myeloproliferative neoplasms: a potential role for heterodimeric receptors. Cell Cycle 2008; 7: 714-719.
    • (2008) Cell Cycle , vol.7 , pp. 714-719
    • Reuther, G.W.1
  • 47
    • 34447345406 scopus 로고    scopus 로고
    • The biology and therapeutic potential of interleukin 27
    • Batten M, Ghilardi N. The biology and therapeutic potential of interleukin 27 4. J Mol Med 2007; 85: 661-672.
    • (2007) J Mol Med , vol.4 , Issue.85 , pp. 661-672
    • Batten, M.1    Ghilardi, N.2
  • 50
    • 0034176798 scopus 로고    scopus 로고
    • DNA hypermethylation in tumorigenesis: Epigenetics joins genetics
    • Baylin SB, Herman JG. DNA hypermethylation in tumorigenesis: epigenetics joins genetics. Trends Genet 2000; 16: 168-174.
    • (2000) Trends Genet , vol.16 , pp. 168-174
    • Baylin, S.B.1    Herman, J.G.2
  • 51
    • 0037068353 scopus 로고    scopus 로고
    • DNA methylation in cancer: Too much, but also too little
    • Ehrlich M. DNA methylation in cancer: too much, but also too little. Oncogene 2002; 21: 5400-5413.
    • (2002) Oncogene , vol.21 , pp. 5400-5413
    • Ehrlich, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.