메뉴 건너뛰기




Volumn 32, Issue 5, 2013, Pages 728-741

Structural basis for ion permeation mechanism in pentameric ligand-gated ion channels

Author keywords

crystallography; electrophysiology; ion channels; molecular dynamics; permeation

Indexed keywords

ANION; HYDROXYL GROUP; LIGAND GATED ION CHANNEL; PENTAMERIC LIGAND GATED ION CHANNEL; SERINE; SODIUM ION; THREONINE; UNCLASSIFIED DRUG; WATER;

EID: 84875220675     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/emboj.2013.17     Document Type: Review
Times cited : (127)

References (51)
  • 1
    • 23344446773 scopus 로고    scopus 로고
    • A potential model for the study of ices and amorphous water: TIP4P/Ice
    • Abascal JL, Sanz E, Garcia Fernandez R, Vega C (2005) A potential model for the study of ices and amorphous water: TIP4P/Ice. J Chem Phys 122: 234511
    • (2005) J Chem Phys , vol.122 , pp. 234511
    • Abascal, J.L.1    Sanz, E.2    Garcia Fernandez, R.3    Vega, C.4
  • 2
    • 17844406709 scopus 로고    scopus 로고
    • The alpha7 nicotinic acetylcholine receptor: Molecular modelling, electrostatics, and energetics
    • Amiri S, Tai K, Beckstein O, Biggin PC, Sansom MS (2005) The alpha7 nicotinic acetylcholine receptor: molecular modelling, electrostatics, and energetics. Mol Membr Biol 22: 151-162
    • (2005) Mol Membr Biol , vol.22 , pp. 151-162
    • Amiri, S.1    Tai, K.2    Beckstein, O.3    Biggin, P.C.4    Sansom, M.S.5
  • 3
    • 58749107160 scopus 로고    scopus 로고
    • Incorporating dipolar solvents with variable density in Poisson-Boltzmann electrostatics
    • Azuara C, Orland H, Bon M, Koehl P, Delarue M (2008) Incorporating dipolar solvents with variable density in Poisson-Boltzmann electrostatics. Biophys J 95: 5587-5605
    • (2008) Biophys J , vol.95 , pp. 5587-5605
    • Azuara, C.1    Orland, H.2    Bon, M.3    Koehl, P.4    Delarue, M.5
  • 4
    • 33745907550 scopus 로고    scopus 로고
    • A hydrophobic gate in an ion channel: The closed state of the nicotinic acetylcholine receptor
    • Beckstein O, Sansom MS (2006) A hydrophobic gate in an ion channel: the closed state of the nicotinic acetylcholine receptor. Phys Biol 3: 147-159
    • (2006) Phys Biol , vol.3 , pp. 147-159
    • Beckstein, O.1    Sansom, M.S.2
  • 9
    • 78649979016 scopus 로고    scopus 로고
    • Molecular dynamics and brownian dynamics investigation of ion permeation and anesthetic halothane effects on a proton-gated ion channel
    • Cheng MH, Coalson RD, Tang P (2010) Molecular dynamics and brownian dynamics investigation of ion permeation and anesthetic halothane effects on a proton-gated ion channel. J Am Chem Soc 132: 16442-16449
    • (2010) J Am Chem Soc , vol.132 , pp. 16442-16449
    • Cheng, M.H.1    Coalson, R.D.2    Tang, P.3
  • 10
    • 35348968348 scopus 로고    scopus 로고
    • Nanosecond-timescale conformational dynamics of the human alpha7 nicotinic acetylcholine receptor
    • Cheng X, Ivanov I, Wang H, Sine SM, McCammon JA (2007) Nanosecond-timescale conformational dynamics of the human alpha7 nicotinic acetylcholine receptor. Biophys J 93: 2622-2634
    • (2007) Biophys J , vol.93 , pp. 2622-2634
    • Cheng, X.1    Ivanov, I.2    Wang, H.3    Sine, S.M.4    McCammon, J.A.5
  • 13
    • 84870378961 scopus 로고    scopus 로고
    • The unanticipated complexity of the selectivity-filter glutamates of nicotinic receptors
    • Cymes GD, Grosman C (2012) The unanticipated complexity of the selectivity-filter glutamates of nicotinic receptors. Nat Chem Biol 8: 975-981
    • (2012) Nat Chem Biol , vol.8 , pp. 975-981
    • Cymes, G.D.1    Grosman, C.2
  • 15
    • 77449153905 scopus 로고    scopus 로고
    • Cation-selective pathway of OmpF porin revealed by anomalous X-ray diffraction
    • Dhakshnamoorthy B, Raychaudhury S, Blachowicz L, Roux B (2010) Cation-selective pathway of OmpF porin revealed by anomalous X-ray diffraction. J Mol Biol 396: 293-300
    • (2010) J Mol Biol , vol.396 , pp. 293-300
    • Dhakshnamoorthy, B.1    Raychaudhury, S.2    Blachowicz, L.3    Roux, B.4
  • 17
    • 78751698969 scopus 로고    scopus 로고
    • Ion selectivity mechanism in a bacterial pentameric ligand-gated ion channel
    • Fritsch S, Ivanov I, Wang H, Cheng X (2011) Ion selectivity mechanism in a bacterial pentameric ligand-gated ion channel. Biophys J 100: 390-398
    • (2011) Biophys J , vol.100 , pp. 390-398
    • Fritsch, S.1    Ivanov, I.2    Wang, H.3    Cheng, X.4
  • 18
    • 0000791015 scopus 로고
    • Structure of the high-affinity binding site for noncompetitive blockers of the acetylcholine receptor: Serine-262 of the delta subunit is labeled by [3H]chlorpromazine
    • Giraudat J, Dennis M, Heidmann T, Chang JY, Changeux JP (1986) Structure of the high-affinity binding site for noncompetitive blockers of the acetylcholine receptor: serine-262 of the delta subunit is labeled by [3H]chlorpromazine. Proc Natl Acad Sci USA 83: 2719-2723
    • (1986) Proc Natl Acad Sci USA , vol.83 , pp. 2719-2723
    • Giraudat, J.1    Dennis, M.2    Heidmann, T.3    Chang, J.Y.4    Changeux, J.P.5
  • 19
    • 1842687872 scopus 로고    scopus 로고
    • Biomolecular cryocrystallography: Structural changes during flash-cooling
    • Halle B (2004) Biomolecular cryocrystallography: structural changes during flash-cooling. Proc Natl Acad Sci USA 101: 4793-4798
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 4793-4798
    • Halle, B.1
  • 20
    • 61349137676 scopus 로고    scopus 로고
    • An ion selectivity filter in the extracellular domain of Cys-loop receptors reveals determinants for ion conductance
    • Hansen SB, Wang HL, Taylor P, Sine SM (2008) An ion selectivity filter in the extracellular domain of Cys-loop receptors reveals determinants for ion conductance. J Biol Chem 283: 36066-36070
    • (2008) J Biol Chem , vol.283 , pp. 36066-36070
    • Hansen, S.B.1    Wang, H.L.2    Taylor, P.3    Sine, S.M.4
  • 21
    • 79957953215 scopus 로고    scopus 로고
    • Principles of activation and permeation in an anion-selective Cys-loop receptor
    • Hibbs RE, Gouaux E (2011) Principles of activation and permeation in an anion-selective Cys-loop receptor. Nature 474: 54-60
    • (2011) Nature , vol.474 , pp. 54-60
    • Hibbs, R.E.1    Gouaux, E.2
  • 23
    • 41149168686 scopus 로고    scopus 로고
    • X-ray structure of a prokaryotic pentameric ligand-gated ion channel
    • Hilf RJ, Dutzler R (2008) X-ray structure of a prokaryotic pentameric ligand-gated ion channel. Nature 452: 375-379
    • (2008) Nature , vol.452 , pp. 375-379
    • Hilf, R.J.1    Dutzler, R.2
  • 24
    • 58149242730 scopus 로고    scopus 로고
    • Structure of a potentially open state of a proton-activated pentameric ligand-gated ion channel
    • Hilf RJ, Dutzler R (2009) Structure of a potentially open state of a proton-activated pentameric ligand-gated ion channel. Nature 457: 115-118
    • (2009) Nature , vol.457 , pp. 115-118
    • Hilf, R.J.1    Dutzler, R.2
  • 25
    • 0025745108 scopus 로고
    • A ring of uncharged polar amino acids as a component of channel constriction in the nicotinic acetylcholine receptor
    • Imoto K, Konno T, Nakai J, Wang F, Mishina M, Numa S (1991) A ring of uncharged polar amino acids as a component of channel constriction in the nicotinic acetylcholine receptor. FEBS Lett 289: 193-200
    • (1991) FEBS Lett , vol.289 , pp. 193-200
    • Imoto, K.1    Konno, T.2    Nakai, J.3    Wang, F.4    Mishina, M.5    Numa, S.6
  • 26
    • 34447131659 scopus 로고    scopus 로고
    • Barriers to ion translocation in cationic and anionic receptors from the Cys-loop family
    • Ivanov I, Cheng X, Sine SM, McCammon JA (2007) Barriers to ion translocation in cationic and anionic receptors from the Cys-loop family. J Am Chem Soc 129: 8217-8224
    • (2007) J Am Chem Soc , vol.129 , pp. 8217-8224
    • Ivanov, I.1    Cheng, X.2    Sine, S.M.3    McCammon, J.A.4
  • 28
    • 68049143193 scopus 로고    scopus 로고
    • Energy and structure of the M2 helix in acetylcholine receptor-channel gating
    • Jha A, Purohit P, Auerbach A (2009) Energy and structure of the M2 helix in acetylcholine receptor-channel gating. Biophys J 96: 4075-4084
    • (2009) Biophys J , vol.96 , pp. 4075-4084
    • Jha, A.1    Purohit, P.2    Auerbach, A.3
  • 29
    • 76449106188 scopus 로고    scopus 로고
    • Integration, scaling, space-group assignment and post-refinement
    • Kabsch W (2010) Integration, scaling, space-group assignment and post-refinement. Acta Cryst D66: 133-144
    • (2010) Acta Cryst , vol.D66 , pp. 133-144
    • Kabsch, W.1
  • 31
    • 81055126297 scopus 로고    scopus 로고
    • On the selective ion binding hypothesis for potassium channels
    • Kim I, Allen TW (2011) On the selective ion binding hypothesis for potassium channels. Proc Natl Acad Sci USA 108: 17963-17968
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 17963-17968
    • Kim, I.1    Allen, T.W.2
  • 33
    • 67650082452 scopus 로고    scopus 로고
    • Water polygons in high-resolution protein crystal structures
    • Lee J, Kim SH (2009) Water polygons in high-resolution protein crystal structures. Protein Sci 18: 1370-1376
    • (2009) Protein Sci , vol.18 , pp. 1370-1376
    • Lee, J.1    Kim, S.H.2
  • 34
    • 79955528924 scopus 로고    scopus 로고
    • Rings of charge within the extracellular vestibule influence ion permeation of the 5-HT3A receptor
    • Livesey MR, Cooper MA, Lambert JJ, Peters JA (2011) Rings of charge within the extracellular vestibule influence ion permeation of the 5-HT3A receptor. J Biol Chem 286: 16008-16017
    • (2011) J Biol Chem , vol.286 , pp. 16008-16017
    • Livesey, M.R.1    Cooper, M.A.2    Lambert, J.J.3    Peters, J.A.4
  • 35
    • 84855389998 scopus 로고    scopus 로고
    • A study of the hydration of the alkali metal ions in aqueous solution
    • Mahler J, Persson I (2012) A study of the hydration of the alkali metal ions in aqueous solution. Inorg Chem 51: 425-438
    • (2012) Inorg Chem , vol.51 , pp. 425-438
    • Mahler, J.1    Persson, I.2
  • 36
    • 79953874257 scopus 로고    scopus 로고
    • In glycine and GABA(A) channels, different subunits contribute asymmetrically to channel conductance via residues in the extracellular domain
    • Moroni M, Meyer JO, Lahmann C, Sivilotti LG (2011) In glycine and GABA(A) channels, different subunits contribute asymmetrically to channel conductance via residues in the extracellular domain. J Biol Chem 286: 13414-13422
    • (2011) J Biol Chem , vol.286 , pp. 13414-13422
    • Moroni, M.1    Meyer, J.O.2    Lahmann, C.3    Sivilotti, L.G.4
  • 37
    • 7244251461 scopus 로고    scopus 로고
    • Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands
    • Noskov SY, Berneche S, Roux B (2004) Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands. Nature 431: 830-834
    • (2004) Nature , vol.431 , pp. 830-834
    • Noskov, S.Y.1    Berneche, S.2    Roux, B.3
  • 42
    • 76249132103 scopus 로고    scopus 로고
    • Ion conduction in ligand-gated ion channels: Brownian dynamics studies of four recent crystal structures
    • Song C, Corry B (2010) Ion conduction in ligand-gated ion channels: Brownian dynamics studies of four recent crystal structures. Biophys J 98: 404-411
    • (2010) Biophys J , vol.98 , pp. 404-411
    • Song, C.1    Corry, B.2
  • 43
    • 26944443142 scopus 로고    scopus 로고
    • Identification of the prokaryotic ligand-gated ion channels and their implications for the mechanisms and origins of animal Cys-loop ion channels
    • Tasneem A, Iyer LM, Jakobsson E, Aravind L (2005) Identification of the prokaryotic ligand-gated ion channels and their implications for the mechanisms and origins of animal Cys-loop ion channels. Genome Biol 6: R4.
    • (2005) Genome Biol , vol.6
    • Tasneem, A.1    Iyer, L.M.2    Jakobsson, E.3    Aravind, L.4
  • 44
    • 0001554681 scopus 로고
    • Water structure of a hydrophobic protein at atomic resolution: Pentagon rings of water molecules in crystals of crambin
    • Teeter MM (1984) Water structure of a hydrophobic protein at atomic resolution: Pentagon rings of water molecules in crystals of crambin. Proc Natl Acad Sci USA 81: 6014-6018
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 6014-6018
    • Teeter, M.M.1
  • 45
    • 0035949666 scopus 로고    scopus 로고
    • On the nature of a glassy state of matter in a hydrated protein: Relation to protein function
    • Teeter MM, Yamano A, Stec B, Mohanty U (2001) On the nature of a glassy state of matter in a hydrated protein: Relation to protein function. Proc Natl Acad Sci USA 98: 11242-11247
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 11242-11247
    • Teeter, M.M.1    Yamano, A.2    Stec, B.3    Mohanty, U.4
  • 46
    • 13444271681 scopus 로고    scopus 로고
    • Refined structure of the nicotinic acetylcholine receptor at 4A resolution
    • Unwin N (2005) Refined structure of the nicotinic acetylcholine receptor at 4A resolution. J Mol Biol 346: 967-989
    • (2005) J Mol Biol , vol.346 , pp. 967-989
    • Unwin, N.1
  • 48
    • 79551615831 scopus 로고    scopus 로고
    • Decrypting the sequence of structural events during the gating transition of pentameric ligand-gated ion channels based on an interpolated elastic network model
    • Zheng W, Auerbach A (2011) Decrypting the sequence of structural events during the gating transition of pentameric ligand-gated ion channels based on an interpolated elastic network model. PLoS Comput Biol 7: e1001046.
    • (2011) PLoS Comput Biol , vol.7
    • Zheng, W.1    Auerbach, A.2
  • 49
    • 0035499892 scopus 로고    scopus 로고
    • Chemistry of ion coordination and hydration revealed by a K\+ channel-Fab complex at 2.0 A resolution
    • Zhou Y, Morais-Cabral JH, Kaufman A, MacKinnon R (2001) Chemistry of ion coordination and hydration revealed by a K\+ channel-Fab complex at 2.0 A resolution. Nature 414: 43-48
    • (2001) Nature , vol.414 , pp. 43-48
    • Zhou, Y.1    Morais-Cabral, J.H.2    Kaufman, A.3    MacKinnon, R.4
  • 50
    • 78650570871 scopus 로고    scopus 로고
    • Pore opening and closing of a pentameric ligand-gated ion channel
    • Zhu F, Hummer G (2010) Pore opening and closing of a pentameric ligand-gated ion channel. Proc Natl Acad Sci USA 107: 19814-19819
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 19814-19819
    • Zhu, F.1    Hummer, G.2
  • 51
    • 84864741474 scopus 로고    scopus 로고
    • Theory and Simulation of Ion conduction in the Pentameric GLIC channel
    • Zhu F, Hummer G (2012) Theory and Simulation of Ion conduction in the Pentameric GLIC channel. JCTC 8: 3759-3768
    • (2012) JCTC , vol.8 , pp. 3759-3768
    • Zhu, F.1    Hummer, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.