Phytate degradation by fungi and bacteria that inhabit sawdust and coffee residue composts

Microbes and Environments

Volumn 28, Issue 1, 2013, Pages 71-80

  Eida, Mohamed Fathallh ^a,b   Nagaoka, Toshinori ^a   Wasaki, Jun ^a   Kouno, Kenji ^a  

^a HIROSHIMA UNIVERSITY   (Japan)

^b NATIONAL RESEARCH CENTRE   (Egypt)

Author keywords

Bacteria; Compost; Degradation; Fungi; Phytate

Indexed keywords

PHOSPHORUS; PHYTASE; PHYTIC ACID;

ARTICLE; BACTERIUM; CHEMISTRY; CLASSIFICATION; COFFEE; FUNGUS; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; SOIL; WOOD;

6-PHYTASE; BACTERIA; COFFEE; FUNGI; PHOSPHORUS; PHYTIC ACID; SOIL; SOIL MICROBIOLOGY; WOOD;

EID: 84875203379     PISSN: 13426311     EISSN: 13474405     Source Type: Journal    
DOI: 10.1264/jsme2.ME12083     Document Type: Article

References (65)

1. Aseri, G.K., N. Jain, and J.C. Tarafdar. 2009. Hydrolysis of organic phosphate forms by phosphatases and phytase producing fungi of arid and semiarid soils of India. Am.-Eurasian. J. Agric. Environ. Sci. 5:564-570.
2. Ashley, K., D. Cordell, and D. Mavinic. 2011. A brief history of phosphorus: From the philosopher's stone to nutrient recovery and reuse. Chemosphere 84:737-746.
3. Bogar, B., G. Szakacs, A. Pandey, S. Abdulhameed, J.C. Linden, and R.P. Tengerdy. 2003. Production of phytase by Mucor racemosus in solid-state fermentation. Biotechnol. Prog. 19:312-319
4. Boulter, J.I., J.T. Trevors, and G.J. Boland. 2002. Microbial studies of compost: bacterial identification, and their potential for turfgrass pathogen suppression. World J. Microbiol. Biotechnol. 18:661-671
5. Boyce, A., and G. Walsh. 2007. Purification and characterisation of an acid phosphatase with phytase activity from Mucor hiemalis Wehmer. J. Biotechnol. 132:82-87.
6. Brenner, D.J., H.E. Müller, A.G. Steigerwalt, A.M. Whitney, C.M. O'Hara, and P. Kämpfer. 1998. Two new Rahnella genomospecies that cannot be phenotypically differentiated from Rahnella aquatilis. Int. J. Syst. Bacteriol. 48:141-149.
7. Celi, L., S. Lamacchia, F.A. Marsan, and E. Barberis. 1999. Interaction of inositol hexaphosphate on clays: adsorption and charging phenomena. Soil Sci. 164:574-585.
8. Dao, T.H. 2003. Polyvalent cation effects on myo-inositol hexakis dihydrogenphosphate enzymatic dephosphorylation in dairy wastewater. J. Environ. Qual. 32:694-701.
9. de Hoog, G.S., and M.T. Smith. 2004. Ribosomal gene phylogeny and species delimitation in Geotrichum and its teleomorphs. Stud. Mycol. 50:489-515.
10. Droffner, M., I. Brintonjr, and E. Vans. 1995. Evidence for the prominence of well characterized mesophilic bacteria in thermophilic (50-70°C) composting environments. Biomass Bioenerg. 8:191-195.
11. Ebune, A., S. Al-Asheh, and Z. Duvnjak. 1995. Effects of phosphate, surfactants and glucose on phytase production and hydrolysis of phytic acid in canola meal by Aspergillus ficuum during solid-state fermentation. Bioresour. Technol. 54:241-247.
12. Eida, M.F., T. Nagaoka, J. Wasaki, and K. Kouno. 2011. Evaluation of cellulolytic and hemicellulolytic abilities of fungi isolated from coffee residue and sawdust composts. Microbes Environ. 26:220-227.
13. Eida, M.F., T. Nagaoka, J. Wasaki, and K. Kouno. 2012. Isolation and characterization of cellulose-decomposing bacteria inhabiting sawdust and coffee residue composts. Microbes Environ. 27:226-233.
14. Fredrikson, M., T. Andlid, A. Haikara, and A.-S. Sandberg. 2002. Phytate degradation by micro-organisms in synthetic media and pea flour. J. Appl. Microbiol. 93:197-204.
15. Fuentes, B., N. Bolan, R. Naidu, and M. de la Luz Mora. 2006. Phosphorus in organic waste-soil systems. J. Soil Sci. Plant. Nutr. 6:64-83.
16. Fuentes, B., M. Jorquera, and M. de la Luz Mora. 2009. Dynamics of phosphorus and phytate-utilizing bacteria during aerobic degradation of dairy cattle dung. Chemosphere 74:325-331.
17. Gargova, S., Z. Roshkova, and G. Vancheva. 1997. Screening of fungi for phytase production. Biotechnol. Tech. 11:221-224.
18. George, T.S., A.E. Richardson, and R.A. Simpson. 2005. Behaviour of plant-derived extracellular phytate upon addition to soil. Soil Biol. Biochem. 37:977-988.
19. Godoy, S., C. Chicco, F. Meschy, and F. Requena. 2005. Phytic phosphorus and phytase activity of animal feed ingredients. Interciencia 30:24-28.
20. Gulati, H.K., B.S. Chadha, and H.S. Saini. 2007. Production and characterization of thermostable alkaline phytase from Bacillus laevolacticus isolated from rhizosphere soil. J. Ind. Microbiol. Biotechnol. 34:91-98.
21. He, Z., C.W. Honeycutt, T. Zhang, and P.M. Bertsch. 2006. Preparation and FT-IR characterization of metal phytate compounds. J. Environ. Qual. 35:1319-1328.
22. Heuer, H., M. Krsek, P. Baker, K. Smalla, and E.M.H. Wellington. 1997. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl. Environ. Microbiol. 63:3233-3241.
23. Hill, J.E., D. Kysela, and M. Elimelech. 2007. Isolation and assessment of phytate-hydrolysing bacteria from the DelMarVa Peninsula. Environ. Microbiol. 9:3100-3107.
24. Holford, I.C.R. 1997. Soil phosphorus: its measurement, and its uptake by plants. Aust. J. Soil Res. 35:227-240.
25. Howson, S.J., and R.P. Davis. 1983. Production of phytate-hydrolysing enzyme by some fungi. Enzyme Microb. Technol. 5:377-382.
26. Irving, G.C.J., and M.J. McLaughlin. 1990. A rapid and simple field test for phosphorous in Olsen and Bray No.1 extracts of soil. Commun. Soil Sci. Plant Anal. 21:2245-2255.
27. Ivanov, V.N., J.Y. Wang, O.V. Stabnikova, S.T.L. Tay, and J.H. Tay. 2004. Microbiological monitoring in the biodegradation of sewage sludge and food waste. J. Appl. Microbiol. 96:641-647.
28. James, A.W., and L.E. Casida. 1964. Accumulation of phosphorus compounds by Mucor racemosus. J. Bacteriol. 37:150-164.
29. Javed, M.M., W. Ahmed, S. Zahoor, and Ikram-Ul-Haq. 2010. Solid state culturing of thermophilic fungi for phytase production. Pak. J. Bot. 42:3605-3611.
30. Jorquera, M.A., M.T. Hernández, Z. Rengel, P. Marschner, and M. de la Luz Mora. 2008. Isolation of culturable phosphobacteria with both phytate-mineralization and phosphate-solubilization activity from the rhizosphere of plants grown in a volcanic soil. Biol. Fertil. Soils. 44:1025-1034
31. Jorquera, M.A., O. Martínez, F. Maruyama, P. Marschner, and M. de la Luz Mora. 2008. Current and future biotechnological application of bacterial phytase and phytase-producing bacteria. Microbes Environ. 23:182-191.
32. Jorquera, M.A., D.E. Crowley, P. Marschner, R. Greiner, M.T. Fernández, D. Romero, D. Menezes-Blackburn, and M. de la Luz Mora. 2011. Identification of β-propeller phytase-encoding genes in culturable Paenibacillus and Bacillus spp. from the rhizosphere of pasture plants on volcanic soils. FEMS Microbiol. Ecol. 75:163-172.
33. Kanazawa, S., Y. Ishikawa, K. Tomita-Yokotani, et al. 2008. Space agriculture for habitation on Mars with hyper-thermophilic aerobic composting bacteria. Adv. Space Res. 41:696-700.
34. Kerovuo, J., L. Marko, P.N. Lauraeus, K. Nisse, and A. Juha. 1998. Isolation, characterization, molecular gene cloning, and sequencing of a novel phytase from Bacillus subtilis. Appl. Environ. Microbiol. 64:2079-2085.
35. Konietzny, U., and R. Greiner. 2002. Molecular and catalytic properties of phytate-degrading enzymes (phytases). Int. J. Food Sci. Technol. 37:791-812.
36. Lan, G.Q., N. Abdullah, S. Jallaludin, and Y.W. Ho. 2002. Culture conditions influencing phytase production of Mitsuokella jalaludinii, a new bacterial species from the rumen of cattle. J. Appl. Microbiol. 93:668-674.
37. Lane, D.J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt, and M. Goodfellow (ed.), Nucleic Acid Techniques in Bacterial Systematics. John Wiley and Sons, New York.
38. Lopez, M.J., M.D. Vargas-Garcia, F. Suarez-Estrella, N.N. Nichols, B.S. Dien, and J. Moreno. 2007. Lignocellulose-degrading enzymes produced by the ascomycete Coniochaeta ligniaria and related species: Application for a lignocellulosic substrate treatment. Enzyme Microb. Technol. 40:794-800.
39. López-López, A., M.A. Rogel, E. Ormeño-Orrillo, J. Martínez-Romero, and E. Martínez-Romero. 2010. Phaseolus vulgaris seedborne endophytic community with novel bacterial species such as Rhizobium endophyticum sp. nov. Syst. Appl. Microbiol. 33:322-327.
40. Lung, S.-C., and B.L. Lim. 2006. Assimilation of phytate-phosphorus by the extracellular phytase activity of tobacco (Nicotiana tabacum) is affected by the availability of soluble phytate. Plant Soil 279:187-199.
41. Manjunathan, J., and V. Kaviyarasan. 2011. Bacteria associated with compost used for cultivation of Indian edible mushroom Lentinus tuber-regium (Fr.). Int. J. Eng. Sci. Technol. 3:44-51.
42. Marlida, Y., R. Delfita, P. Adnadi, and G. Ciptaan. 2010. Isolation, characterization and production of phytase from endophytic fungus its application for feed. Pak. J. Nutr. 9:471-474.
43. Murphy, J., and J.P. Riley. 1962. A modified single solution method for the determination of phosphate in natural waters. Anal. Chim. Acta. 27:31-36.
44. Pandey, A., G. Szakacs, C.R. Soccol, J.A. Rodriguez-Leon, and V.T. Soccol. 2001. Production, purification and properties of microbial phytases. Bioresour. Technol. 77:203-214.
45. Pankratov, T.A., I.S. Kulichevskaya, W. Liesack, and S.N. Dedysh. 2006. Isolation of aerobic, gliding, xylanolytic and laminarinolytic bacteria from acidic Sphagnum peatlands and emended description of Chitinophaga arvensicola Kämpfer et al. 2006. Int. J. Syst. Evol. Microbiol. 56:2761-2764.
46. Quan, C., L. Zhang, Y. Wang, and Y. Ohta. 2001. Production of phytase in a low phosphate medium by a novel yeast Candida krusei. J. Biosci. Bioeng. 92:154-160.
47. Raboy, V., D.B. Dickinson, and M.G. Neuffer. 1990. A survey of survey of maize kernel mutants for variation in phytic acid. Maydica 35:383-390.
48. Ravindran, V., G. Ravindran, and S. Sivalogan. 1994. Total and phytate phosphorus contents of various foods and feedstuffs of plant origin. Food Chem. 50:133-136.
49. 13P NMR study. J. Agric. Food Chem. 52:6300-6305.
50. Richardson, A.E., T.S. George, M. Hens, and R.J. Simpson. 2005. Utilization of soil organic phosphorus by higher plants, p. 165-184. In B.L. Turner, E. Frossard, and D. Baldwin (ed.), Organic Phosphorus in the Environment. CABI Publishing, Wallingford.
51. Roopesh, K., S. Ramachandran, K.M. Nampoothiri, G. Szakacs, and A. Pandey. 2006. Comparison of phytase production on wheat bran and oilcakes in solid-state fermentation by Mucor racemosus. Bioresour. Technol. 97:506-511.
52. Rozhon, W.M., E.K. Petutschnig, and C. Jonak. 2006. Isolation and characterization of pHW15, a small cryptic plasmid from Rahnella genomospecies 2. Plasmid 56:202-215.
53. Schachtman, D.P., J.R. Robert, and S.M. Ayling. 1998. Phosphorus uptake by plants: from soil to cell. Plant Physiol. 116:447-453.
54. Shieh, T.R., and J.H. Ware. 1968. Survey of Microorganisms for the production of extracellular phytase. Applied Miclobiol. 16:348-1351.
55. Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739.
56. Tangsubkul, N., S. Moore, and T.D. Waite. 2005. Incorporating phosphorus management considerations into wastewater management practices. Environ. Sci. Pol. 8:1-15.
57. Tseng, Y.-H., T.J. Fang, and S.-M. Tseng. 2000. Isolation and characterization of a novel phytase from Penicillium simplicissimum. Folia Microbiol. 45:121-127.
58. Tuomela, M., M. Vikman, A. Hatakka, and M. Itävaara. 2000. Biodegradation of lignin in a compost environment: a review. Bioresour. Technol. 72:169-183.
59. Turner, B.L., M.J. Papházy, P.M. Haygarth, and I.D. McKelvie. 2002. Inositol phosphate in the environment. Phi. Trans. R. Soc. B. 357:449-469.
60. Turner, S., K.M. Pryer, V.P.W. Miao, and J.D. Palmer. 1999. Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis. J. Eukaryot. Microbiol. 46:327-338.
61. Wyss, M., R. Brugger, A. Kronenberger, R. Rémy, R. Fimbel, G. Oesterhelt, M. Lehmann, and A.P.G.M. Van Loon. 1999. Biochemical characterization of fungal phytases (myo-inositol hexakisphosphate phosphohydrolases): catalytic properties. Appl. Environ. Microbiol. 65:367-373.
62. Wickramatilake, A.R.P., K. Kouno, and T. Nagaoka. 2010. Compost amendment enhances the biological properties of Andosols and improves phosphorus utilization from added rock phosphate. Soil Sci. Plant Nutr. 56:607-616.
63. Wickramatilake, A.R.P., R. Munehiro, T. Nagaoka, J. Wasaki, and K. Kouno. 2011. Compost amendment enhances population and composition of phosphate solubilizing bacteria and improves phosphorus availability in granitic regosols. Soil Sci. Plant Nutr. 57:529-540.
64. Yasir, M., E.J. Chung, G.C.F. Bibi, C.O. Jeon, and Y.R. Chung. 2011. Chitinophaga eiseniae sp nov., isolated from vermicompost. Int. J. Syst. Evol. Microbiol. 61:2373-2378.
65. Yoon, S.J., Y.J. Choi, H.K. Min, K.K. Cho, J.W. Kim, S.C. Lee, and Y.H. Jung. 1996. Isolation and identification of phytase producing bacterium, Enterobacter sp. 4, and enzymatic properties of phytase enzyme. Enzyme Microb. Technol. 18:449-454.