Antisense Oligodeoxynucleotide Inhibition as an Alternative and Convenient Method for Gene Function Analysis in Pollen Tubes

PLoS ONE

Volumn 8, Issue 3, 2013, Pages

  Liao, Fanglei ^a,b   Wang, Lu ^b   Yang, Li Bo ^b   Zhang, Liyao ^b   Peng, Xiongbo ^b   Sun, Meng xiang ^b  

^a ZHEJIANG NORMAL UNIVERSITY   (China)

^b WUHAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ANTISENSE OLIGODEOXYNUCLEOTIDE; BIOLOGICAL MARKER; RNA;

ANALYTIC METHOD; ANTISENSE OLIGODEOXYNUCLEOTIDE INHIBITION; ARTICLE; CELL MEMBRANE; CELL TRANSPORT; CELL VACUOLE; DOWN REGULATION; ENDOCYTOSIS; GENE; GENE EXPRESSION; GENE FUNCTION; GENE TARGETING; GENETIC ANALYSIS; IN VITRO STUDY; MOLECULAR MECHANICS; NONHUMAN; NTGNL1 GENE; NUCLEOTIDE SEQUENCE; PHENOTYPE; POLLEN TUBE; PROTEIN DEGRADATION; RNA INTERFERENCE; TOBACCO;

DOWN-REGULATION; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; OLIGODEOXYRIBONUCLEOTIDES, ANTISENSE; PERMEABILITY; PHENOTYPE; POLLEN TUBE; RNA INTERFERENCE;

EID: 84875162062     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0059112     Document Type: Article

References (47)

1. Olie RA, Simoes-Wust AP, Baumann B, Leech SH, Fabbro D, et al. (2000) A novel antisense oligonucleotide targeting survivin expression induces apoptosis and sensitizes lung cancer cells to chemotherapy. Cancer Res 60: 2805-2809.
2. Li SD, Huang L, (2006) Targeted delivery of antisense oligodeoxynucleotide and small interference RNA into lung cancer cells. Mol Pharm 3: 579-588.
3. Speir E, Epstein SE, (1992) Inhibition of smooth muscle cell proliferation by an antisense oligodeoxynucleotide targeting the messenger RNA encoding proliferating cell nuclear antigen. Circulation 86: 538-547.
4. Aleman LM, Doench J, Sharp PA, (2007) Comparison of siRNA-induced off-target RNA and protein effects. RNA 13: 385-395.
5. Stephens AC, Ranlall NF, Rivers RP, (2008) Suppression of HUVEC tissue factor synthesis by antisense oligodeoxynucleotide. Thromb Res 122: 99-107.
6. Cao YQ, Wang FG, Huo R, Cai JL, Feng YQ,et al. [Effect of survivin antisense oligodeoxynucleotide on proliferation and apoptosis of human malignant melanoma cells]. Zhonghua Shao Shang Za Zhi 26: 128-132.
7. Giles RV, Tidd DM, (1992) Increased specificity for antisense oligodeoxynucleotide targeting of RNA cleavage by RNase H using chimeric methylphosphonodiester/phosphodiester structures. Nucleic Acids Res 20: 763-770.
8. Sazani P, Kole R, (2003) Therapeutic potential of antisense oligonucleotides as modulators of alternative splicing. J Clin Invest 112: 481-486.
9. Jackson AL, Bartz SR, Schelter J, Kobayashi SV, Burchard J, et al. (2003) Expression profiling reveals off-target gene regulation by RNAi. Nat Biotechnol 21: 635-637.
10. Qiu S, Adema CM, Lane T, (2005) A computational study of off-target effects of RNA interference. Nucleic Acids Res 33: 1834-1847.
11. Schussler MD, Alexandersson E, Bienert GP, Kichey T, Laursen KH, et al. (2008) The effects of the loss of TIP1;1 and TIP1;2 aquaporins in Arabidopsis thaliana. Plant J 56: 756-767.
12. Dinc E, Toth SZ, Schansker G, Ayaydin F, Kovacs L, et al. (2011) Synthetic antisense oligodeoxynucleotides to transiently suppress different nucleus- and chloroplast-encoded proteins of higher plant chloroplasts. Plant Physiol 157: 1628-1641.
13. Sandy P, Ventura A, Jacks T, (2005) Mammalian RNAi: a practical guide. Biotechniques 39: 215-224.
14. Kurreck J, (2003) Antisense technologies. Improvement through novel chemical modifications. Eur J Biochem 270: 1628-1644.
15. Gilar M, Belenky A, Budman Y, Smisek DL, Cohen AS, (1998) Study of phosphorothioate-modified oligonucleotide resistance to 3′-exonuclease using capillary electrophoresis. J Chromatogr B Biomed Sci Appl 714: 13-20.
16. Sun C, Hoglund AS, Olsson H, Mangelsen E, Jansson C, (2005) Antisense oligodeoxynucleotide inhibition as a potent strategy in plant biology: identification of SUSIBA2 as a transcriptional activator in plant sugar signalling. Plant J 44: 128-138.
17. Sun C, Ridderstrale K, Hoglund AS, Larsson LG, Jansson C, (2007) Sweet delivery- sugar translocators as ports of entry for antisense oligodeoxynucleotides in plant cells. Plant J 52: 1192-1198.
18. Moutinho A, Camacho L, Haley A, Salomé Pais M, Trewavas AJ, et al. (2001) Antisense perturbation of protein function in living pollen tubes. Sexual Plant Reproduction 14: 101-104.
19. Moutinho A, Hussey PJ, Trewavas AJ, Malho R, (2001) cAMP acts as a second messenger in pollen tube growth and reorientation. Proc Natl Acad Sci U S A 98: 10481-10486.
20. Alam MR, Dixit V, Kang H, Li ZB, Chen X, et al. (2008) Intracellular delivery of an anionic antisense oligonucleotide via receptor-mediated endocytosis. Nucleic Acids Res 36: 2764-2776.
21. Alam MR, Ming X, Dixit V, Fisher M, Chen X,et al. The biological effect of an antisense oligonucleotide depends on its route of endocytosis and trafficking. Oligonucleotides 20: 103-109.
22. Ming X, (2011) Cellular delivery of siRNA and antisense oligonucleotides via receptor-mediated endocytosis. Expert Opin Drug Deliv 8: 435-449.
23. Song XF, Yang CY, Liu J, Yang WC, (2006) RPA, a class II ARFGAP protein, activates ARF1 and U5 and plays a role in root hair development in Arabidopsis. Plant Physiol 141: 966-976.
24. Geldner N, Anders N, Wolters H, Keicher J, Kornberger W, et al. (2003) The Arabidopsis GNOM ARF-GEF mediates endosomal recycling, auxin transport, and auxin-dependent plant growth. Cell 112: 219-230.
25. Anders N, Jurgens G, (2008) Large ARF guanine nucleotide exchange factors in membrane trafficking. Cell Mol Life Sci 65: 3433-3445.
26. Nakano RT, Matsushima R, Ueda H, Tamura K, Shimada T, et al. (2009) GNOM-LIKE1/ERMO1 and SEC24a/ERMO2 are required for maintenance of endoplasmic reticulum morphology in Arabidopsis thaliana. Plant Cell 21: 3672-3685.
27. Richter S, Geldner N, Schrader J, Wolters H, Stierhof YD, et al. (2007) Functional diversification of closely related ARF-GEFs in protein secretion and recycling. Nature 448: 488-492.
28. Teh OK, Moore I, (2007) An ARF-GEF acting at the Golgi and in selective endocytosis in polarized plant cells. Nature 448: 493-496.
29. Richter S, Muller LM, Stierhof YD, Mayer U, Takada N, et al. (2012) Polarized cell growth in Arabidopsis requires endosomal recycling mediated by GBF1-related ARF exchange factors. Nature Cell Biology 14: 80-U130.
30. Wang L, Liao FL, Zhu L, Peng XB, Sun MX, (2008) NtGNL1 is involved in embryonic cell division patterning, root elongation, and pollen tube growth in tobacco. New Phytol 179: 81-93.
31. Liao F, Wang L, Yang LB, Peng X, Sun M, (2010) NtGNL1 plays an essential role in pollen tube tip growth and orientation likely via regulation of post-Golgi trafficking. PLoS One 5: e13401.
32. Parton RM, Fischer-Parton S, Watahiki MK, Trewavas AJ, (2001) Dynamics of the apical vesicle accumulation and the rate of growth are related in individual pollen tubes. J Cell Sci 114: 2685-2695.
33. Parton RM, Fischer-Parton S, Trewavas AJ, Watahiki MK, (2003) Pollen tubes exhibit regular periodic membrane trafficking events in the absence of apical extension. J Cell Sci 116: 2707-2719.
34. Ferguson C, Teeri TT, Siikaaho M, Read SM, Bacic A, (1998) Location of cellulose and callose in pollen tubes and grains of Nicotiana tabacum. Planta 206: 452-460.
35. Rockel N, Wolf S, Kost B, Rausch T, Greiner S, (2008) Elaborate spatial patterning of cell-wall PME and PMEI at the pollen tube tip involves PMEI endocytosis, and reflects the distribution of esterified and de-esterified pectins. Plant J 53: 133-143.
36. Gewirtz AM, Sokol DL, Ratajczak MZ, (1998) Nucleic acid therapeutics: state of the art and future prospects. Blood 92: 712-736.
37. Zhang C, Pei J, Kumar D, Sakabe I, Boudreau HE, et al. (2007) Antisense oligonucleotides: target validation and development of systemically delivered therapeutic nanoparticles. Methods Mol Biol 361: 163-185.
38. Estruch JJ, Kadwell S, Merlin E, Crossland L, (1994) Cloning and characterization of a maize pollen-specific calcium-dependent calmodulin-independent protein kinase. Proc Natl Acad Sci U S A 91: 8837-8841.
39. Wyatt JR, Vickers TA, Roberson JL, Buckheit RW Jr, Klimkait T, et al. (1994) Combinatorially selected guanosine-quartet structure is a potent inhibitor of human immunodeficiency virus envelope-mediated cell fusion. Proc Natl Acad Sci U S A 91: 1356-1360.
40. Buckheit RW Jr, Roberson JL, Lackman-Smith C, Wyatt JR, Vickers TA, et al. (1994) Potent and specific inhibition of HIV envelope-mediated cell fusion and virus binding by G quartet-forming oligonucleotide (ISIS 5320). AIDS Res Hum Retroviruses 10: 1497-1506.
41. Krieg AM, (2002) CpG motifs in bacterial DNA and their immune effects. Annu Rev Immunol 20: 709-760.
42. Kristen U, Kappler R, (1995) The pollen tube growth test. Methods Mol Biol 43: 189-198.
43. Sawidis T, (2008) Effect of cadmium on pollen germination and tube growth in Lilium longiflorum and Nicotiana tabacum. Protoplasma 233: 95-106.
44. Moscatelli A, Ciampolini F, Rodighiero S, Onelli E, Cresti M, et al. (2007) Distinct endocytic pathways identified in tobacco pollen tubes using charged nanogold. J Cell Sci 120: 3804-3819.
45. Sun MX, Moscatelli A, Yang HY, Cresti M, (2000) In vitro double fertilization in Nicotiana tabacum(L): fusion behavior and gamete interaction traced by video-enhanced microscopy. Sex Plant Reprod 12: 267-275.
46. Zhang LY, Sun MX, (2005) Field-amplified sample injection and in-capillary derivatization for sensitivity improvement of the electrophoretic determination of histamine. J Chromatogr A 1100: 230-235.
47. Zhang LY, Sun MX, (2007) Capillary electrophoresis of phosphorylated amino acids with fluorescence detection. J Chromatogr B Analyt Technol Biomed Life Sci 859: 30-36.