-
6
-
-
84889350276
-
Global network properties
-
Wiley, Junker B, Schreiber F
-
Steuer R, López G. Global network properties. Analysis of Biological Networks 2008, 31-63. Wiley, Junker B, Schreiber F.
-
(2008)
Analysis of Biological Networks
, pp. 31-63
-
-
Steuer, R.1
López, G.2
-
10
-
-
35748944115
-
Exploring biological network structure using exponential random graph models
-
10.1093/bioinformatics/btm370, 17644557
-
Saul Z, Filkov V. Exploring biological network structure using exponential random graph models. Bioinformatics 2007, 23(19):2604-2611. 10.1093/bioinformatics/btm370, 17644557.
-
(2007)
Bioinformatics
, vol.23
, Issue.19
, pp. 2604-2611
-
-
Saul, Z.1
Filkov, V.2
-
11
-
-
33646745354
-
A likelihood approach to analysis of network data
-
10.1073/pnas.0600061103, 1472487, 16682633
-
Wiuf C, Brameier M, Hagberg O, Stumpf M. A likelihood approach to analysis of network data. Proc Natl Acad Sci U S A 2006, 103:7566-7570. 10.1073/pnas.0600061103, 1472487, 16682633.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 7566-7570
-
-
Wiuf, C.1
Brameier, M.2
Hagberg, O.3
Stumpf, M.4
-
12
-
-
33845196533
-
Abstract machines of systems biology
-
Springer-Verlag, Priami C, Merelli E, Gonzalez P, Omicini A
-
Cardelli L. Abstract machines of systems biology. Transactions on Computational Systems Biology III 2005, 145-168. Springer-Verlag, Priami C, Merelli E, Gonzalez P, Omicini A.
-
(2005)
Transactions on Computational Systems Biology III
, pp. 145-168
-
-
Cardelli, L.1
-
13
-
-
84889282670
-
Correlation networks
-
Wiley, Junker B, Schreiber F
-
Steinhauser D, Krall L, Müssig C, Büssis D, Usadel B. Correlation networks. Analysis of Biological Networks 2008, 305-333. Wiley, Junker B, Schreiber F.
-
(2008)
Analysis of Biological Networks
, pp. 305-333
-
-
Steinhauser, D.1
Krall, L.2
Müssig, C.3
Büssis, D.4
Usadel, B.5
-
14
-
-
0036428114
-
Comparing networks across space and time, size and species
-
Faust K, Skvoretz J. Comparing networks across space and time, size and species. Sociol Methodol 2002, 32:267-299.
-
(2002)
Sociol Methodol
, vol.32
, pp. 267-299
-
-
Faust, K.1
Skvoretz, J.2
-
15
-
-
21344478905
-
Metric inference for social networks
-
Banks D, Carley K. Metric inference for social networks. J Classif 1994, 11:121-149.
-
(1994)
J Classif
, vol.11
, pp. 121-149
-
-
Banks, D.1
Carley, K.2
-
16
-
-
0002850363
-
Models for evolving fixed node networks: model fitting and model testing
-
Sanil A, Banks D, Carley K. Models for evolving fixed node networks: model fitting and model testing. Social Networks 1995, 17:65-81.
-
(1995)
Social Networks
, vol.17
, pp. 65-81
-
-
Sanil, A.1
Banks, D.2
Carley, K.3
-
18
-
-
36249019789
-
Dialogue on reverse-engineering assessment and methods: the DREAM of high-throughput pathway inference
-
New York Academy of Sciences, Stolovitzky G, Califano A
-
Stolovitzky G, Monroe D, Califano A. Dialogue on reverse-engineering assessment and methods: the DREAM of high-throughput pathway inference. Reverse Engineering Biological Networks: Opportunities and Challenges in Computational Methods for Pathway Inference 2007, 1-22. New York Academy of Sciences, Stolovitzky G, Califano A.
-
(2007)
Reverse Engineering Biological Networks: Opportunities and Challenges in Computational Methods for Pathway Inference
, pp. 1-22
-
-
Stolovitzky, G.1
Monroe, D.2
Califano, A.3
-
20
-
-
77950512326
-
Co-expression networks: graph properties and topological comparisons
-
10.1093/bioinformatics/btp632, 2804297, 19910304
-
Xulvi-Brunet R, Li H. Co-expression networks: graph properties and topological comparisons. Bioinformatics 2010, 26:205-214. 10.1093/bioinformatics/btp632, 2804297, 19910304.
-
(2010)
Bioinformatics
, vol.26
, pp. 205-214
-
-
Xulvi-Brunet, R.1
Li, H.2
-
21
-
-
77950544798
-
A statistical framework for differential network analysis from microarray data
-
Gill R, Datta S, Datta S. A statistical framework for differential network analysis from microarray data. BMC Bioinforma 2010, 11:95.
-
(2010)
BMC Bioinforma
, vol.11
, pp. 95
-
-
Gill, R.1
Datta, S.2
Datta, S.3
-
22
-
-
33846705486
-
Network neighborhood analysis with the multi-node topological overlap measure
-
10.1093/bioinformatics/btl581, 17110366
-
Li A, Horvath S. Network neighborhood analysis with the multi-node topological overlap measure. Bioinformatics 2007, 23:222-231. 10.1093/bioinformatics/btl581, 17110366.
-
(2007)
Bioinformatics
, vol.23
, pp. 222-231
-
-
Li, A.1
Horvath, S.2
-
23
-
-
23944458138
-
A general framework for weighted gene co-expression network analysis
-
Zhang B, Horvath S. A general framework for weighted gene co-expression network analysis. Stat Appl Genet Mol Biol 2005, 4:17.
-
(2005)
Stat Appl Genet Mol Biol
, vol.4
, pp. 17
-
-
Zhang, B.1
Horvath, S.2
-
24
-
-
60549111634
-
WGCNA: an R package for weighted correlation network analysis
-
Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinforma 2008, 9:559.
-
(2008)
BMC Bioinforma
, vol.9
, pp. 559
-
-
Langfelder, P.1
Horvath, S.2
-
26
-
-
33645053483
-
Distance-based tests for homogeneity of multivariate dispersions
-
10.1111/j.1541-0420.2005.00440.x, 16542252
-
Anderson M. Distance-based tests for homogeneity of multivariate dispersions. Biometrics 2006, 62:245-253. 10.1111/j.1541-0420.2005.00440.x, 16542252.
-
(2006)
Biometrics
, vol.62
, pp. 245-253
-
-
Anderson, M.1
-
27
-
-
0346271739
-
Bootstrapping phylogenetic trees: theory and methods
-
Holmes S. Bootstrapping phylogenetic trees: theory and methods. Stat Sci 2003, 18(2):241-255.
-
(2003)
Stat Sci
, vol.18
, Issue.2
, pp. 241-255
-
-
Holmes, S.1
-
29
-
-
0036191190
-
Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modelling
-
10.1093/bioinformatics/18.2.287, 11847076
-
Toh H, Horimoto K. Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modelling. Bioinformatics 2002, 18(2):287-297. 10.1093/bioinformatics/18.2.287, 11847076.
-
(2002)
Bioinformatics
, vol.18
, Issue.2
, pp. 287-297
-
-
Toh, H.1
Horimoto, K.2
-
30
-
-
34548747580
-
The chronic fatigue syndrome: a comparative pathway analysis
-
10.1089/cmb.2007.0041, 17803373
-
Emmert-Streib F. The chronic fatigue syndrome: a comparative pathway analysis. J Comput Biol 2007, 14(7):961-972. 10.1089/cmb.2007.0041, 17803373.
-
(2007)
J Comput Biol
, vol.14
, Issue.7
, pp. 961-972
-
-
Emmert-Streib, F.1
-
31
-
-
1642403354
-
Identification of genetic networks
-
10.1534/genetics.166.2.1037, 1470757, 15020486
-
Xiong M, Li J, Fang X. Identification of genetic networks. Genetics 2004, 166(2):1037-1052. 10.1534/genetics.166.2.1037, 1470757, 15020486.
-
(2004)
Genetics
, vol.166
, Issue.2
, pp. 1037-1052
-
-
Xiong, M.1
Li, J.2
Fang, X.3
-
33
-
-
41949141213
-
-
ASA-SIAM: ASA-SIAM Series on Statistics and Applied Probability
-
Gan G, Ma C, Wu J. Data Clustering: Theory, Algorithms, and Applications 2007, ASA-SIAM: ASA-SIAM Series on Statistics and Applied Probability.
-
(2007)
Data Clustering: Theory, Algorithms, and Applications
-
-
Gan, G.1
Ma, C.2
Wu, J.3
-
36
-
-
45349097076
-
Statnet: software tools for the representation, visualization, analysis and simulation of network data
-
2443947, 18612375
-
Handcock M, Hunter D, Butts C, Goodreau S, Morris M. statnet: software tools for the representation, visualization, analysis and simulation of network data. J Stat Softw 2008, 24:1. 2443947, 18612375.
-
(2008)
J Stat Softw
, vol.24
, pp. 1
-
-
Handcock, M.1
Hunter, D.2
Butts, C.3
Goodreau, S.4
Morris, M.5
-
37
-
-
15944364151
-
An empirical Bayes approach to inferring large-scale gene association networks
-
10.1093/bioinformatics/bti062, 15479708
-
Schäfer J, Strimmer K. An empirical Bayes approach to inferring large-scale gene association networks. Bioinformatics 2005, 21:754-764. 10.1093/bioinformatics/bti062, 15479708.
-
(2005)
Bioinformatics
, vol.21
, pp. 754-764
-
-
Schäfer, J.1
Strimmer, K.2
-
38
-
-
12344321571
-
Discovery of meaningful associations in genomic data using partial correlation coefficients
-
10.1093/bioinformatics/bth445, 15284096
-
De La Fuente A, Bing N, Hoeschele I, Mendes P. Discovery of meaningful associations in genomic data using partial correlation coefficients. Bioinformatics 2004, 20:3565-3574. 10.1093/bioinformatics/bth445, 15284096.
-
(2004)
Bioinformatics
, vol.20
, pp. 3565-3574
-
-
De La Fuente, A.1
Bing, N.2
Hoeschele, I.3
Mendes, P.4
-
39
-
-
38449088751
-
Inferring cellular networks - a review
-
Markowetz F, Spang R. Inferring cellular networks - a review. BMC Bioinforma 2007, 8(Suppl 6):S5.
-
(2007)
BMC Bioinforma
, vol.8
, Issue.SUPPL. 6
-
-
Markowetz, F.1
Spang, R.2
-
40
-
-
34848903220
-
From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data
-
10.1186/1752-0509-1-37, 1995222, 17683609
-
Opgen-Rhein R, Strimmer K. From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data. BMC Syst Biol 2007, 1:37. 10.1186/1752-0509-1-37, 1995222, 17683609.
-
(2007)
BMC Syst Biol
, vol.1
, pp. 37
-
-
Opgen-Rhein, R.1
Strimmer, K.2
-
41
-
-
0038054341
-
PGC-1 alpha-responsive genes involved in oxidative phosphorylation are co-ordinately downregulated in human diabetes
-
10.1038/ng1180, 12808457
-
Mootha VK, Lindgren CM, Eriksson KF, Subramanian A, Sihag S, Lehar J, Puigserver P, Carlsson E, Ridderstrale M, Laurila E. PGC-1 alpha-responsive genes involved in oxidative phosphorylation are co-ordinately downregulated in human diabetes. Nat Genet 2003, 34(3):267-273. 10.1038/ng1180, 12808457.
-
(2003)
Nat Genet
, vol.34
, Issue.3
, pp. 267-273
-
-
Mootha, V.K.1
Lindgren, C.M.2
Eriksson, K.F.3
Subramanian, A.4
Sihag, S.5
Lehar, J.6
Puigserver, P.7
Carlsson, E.8
Ridderstrale, M.9
Laurila, E.10
-
42
-
-
84872301211
-
-
The Broad Institute http://www.broadinstitute.org/publications/broad991s.
-
The Broad Institute
-
-
-
43
-
-
33644687627
-
Differential gene expression in ovarian tumors reveals Dusp 4 and Serpina 5 as key regulators for benign behavior of serous borderline tumors
-
10.1200/JCO.2005.02.2541, 16087957
-
Sieben NLG, Oosting J, Flanagan AM, Prat J, Roemen GMJM, Kolkman-Uljee SM, van Eijk R, Cornelisse CJ, Fleuren GJ, van Engeland M. Differential gene expression in ovarian tumors reveals Dusp 4 and Serpina 5 as key regulators for benign behavior of serous borderline tumors. J Clin Oncol 2005, 23(29):7257-7264. 10.1200/JCO.2005.02.2541, 16087957.
-
(2005)
J Clin Oncol
, vol.23
, Issue.29
, pp. 7257-7264
-
-
Sieben, N.L.G.1
Oosting, J.2
Flanagan, A.M.3
Prat, J.4
Roemen, G.M.J.M.5
Kolkman-Uljee, S.M.6
van Eijk, R.7
Cornelisse, C.J.8
Fleuren, G.J.9
van Engeland, M.10
-
44
-
-
58449103236
-
E2Fs mediate a fundamental cell-cycle deregulation in high-grade serous ovarian carcinomas
-
10.1002/path.2452, 18991331
-
De Meyer T, Bijsmans IT, Van de Vijver KK, Bekaert S, Oosting J, Van Criekinge W, van Engeland M, Sieben N. E2Fs mediate a fundamental cell-cycle deregulation in high-grade serous ovarian carcinomas. J Pathol 2009, 217:14-20. 10.1002/path.2452, 18991331.
-
(2009)
J Pathol
, vol.217
, pp. 14-20
-
-
De Meyer, T.1
Bijsmans, I.T.2
Van de Vijver, K.K.3
Bekaert, S.4
Oosting, J.5
Van Criekinge, W.6
van Engeland, M.7
Sieben, N.8
-
45
-
-
66049138503
-
Analysis of gene expression in stage I serous tumors identifies critical pathways altered in ovarian cancer
-
10.1016/j.ygyno.2009.04.002, 19410283
-
Chien J, Fan JB, Bell DA, April C, Klotzle B, Ota T, Lingle WL, Gonzalez Bosquet J, Shridhar V, Hartmann LC. Analysis of gene expression in stage I serous tumors identifies critical pathways altered in ovarian cancer. Gynecol Oncol 2009, 114:3-11. 10.1016/j.ygyno.2009.04.002, 19410283.
-
(2009)
Gynecol Oncol
, vol.114
, pp. 3-11
-
-
Chien, J.1
Fan, J.B.2
Bell, D.A.3
April, C.4
Klotzle, B.5
Ota, T.6
Lingle, W.L.7
Gonzalez Bosquet, J.8
Shridhar, V.9
Hartmann, L.C.10
-
46
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
10.1093/nar/30.1.207, 99122, 11752295
-
Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002, 30:207-210. 10.1093/nar/30.1.207, 99122, 11752295.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
47
-
-
4043163461
-
E2F target genes: unraveling the biology
-
10.1016/j.tibs.2004.06.006, 15362224
-
Bracken AP, Ciro M, Cocito A, Helin K. E2F target genes: unraveling the biology. Trends Biochem Sci 2004, 29(8):409-417. 10.1016/j.tibs.2004.06.006, 15362224.
-
(2004)
Trends Biochem Sci
, vol.29
, Issue.8
, pp. 409-417
-
-
Bracken, A.P.1
Ciro, M.2
Cocito, A.3
Helin, K.4
-
48
-
-
33745140886
-
Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome
-
10.1101/gr.4887606, 1457046, 16606705
-
Bieda M, Xu X, Singer MA, Green R, Farnham PJ. Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome. Genome Res 2006, 16:595-605. 10.1101/gr.4887606, 1457046, 16606705.
-
(2006)
Genome Res
, vol.16
, pp. 595-605
-
-
Bieda, M.1
Xu, X.2
Singer, M.A.3
Green, R.4
Farnham, P.J.5
-
50
-
-
0002702193
-
A review of the theory and estimation of fractal dimension
-
World Scientific Publishing, Tong H
-
Cutler C. A review of the theory and estimation of fractal dimension. Dimension Estimation and Models 1993, 1-107. World Scientific Publishing, Tong H.
-
(1993)
Dimension Estimation and Models
, pp. 1-107
-
-
Cutler, C.1
-
51
-
-
34248593385
-
Gene expression network analysis and applications to immunology
-
10.1093/bioinformatics/btm019, 17267429
-
Nacu S, Critchley-Thorne R, Lee P, Holmes S. Gene expression network analysis and applications to immunology. Bioinformatics 2007, 23:850-858. 10.1093/bioinformatics/btm019, 17267429.
-
(2007)
Bioinformatics
, vol.23
, pp. 850-858
-
-
Nacu, S.1
Critchley-Thorne, R.2
Lee, P.3
Holmes, S.4
-
52
-
-
0032280289
-
Metric models for random graphs
-
Banks D, Constantine G. Metric models for random graphs. J Classif 1998, 15:199-223.
-
(1998)
J Classif
, vol.15
, pp. 199-223
-
-
Banks, D.1
Constantine, G.2
-
53
-
-
55749093996
-
Network inference using informative priors
-
10.1073/pnas.0802272105, 2567188, 18799736
-
Mukherjee S, Speed T. Network inference using informative priors. Proc Natl Acad Sci U S A 2008, 105:14313-14318. 10.1073/pnas.0802272105, 2567188, 18799736.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 14313-14318
-
-
Mukherjee, S.1
Speed, T.2
-
54
-
-
84872222974
-
Functional alignment of regulatory networks: a study of temperate phages
-
10.1371/journal.pcbi.0010074, 1317652, 16477325
-
Trusina A, Sneppen K, Dodd I, Shearwin K, Egan J. Functional alignment of regulatory networks: a study of temperate phages. PLoS Comput Biol 2005, 1(7):e74. 10.1371/journal.pcbi.0010074, 1317652, 16477325.
-
(2005)
PLoS Comput Biol
, vol.1
, Issue.7
-
-
Trusina, A.1
Sneppen, K.2
Dodd, I.3
Shearwin, K.4
Egan, J.5
-
55
-
-
0032440889
-
Matchings and phylogenetic trees
-
10.1073/pnas.95.25.14600, 24495, 9843935
-
Diaconis P, Holmes S. Matchings and phylogenetic trees. Proc Natl Acad Sci U S A 1998, 95:14600-14602. 10.1073/pnas.95.25.14600, 24495, 9843935.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 14600-14602
-
-
Diaconis, P.1
Holmes, S.2
-
56
-
-
33745075009
-
Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation
-
Forst C, Flamm C, Hofacker I, Stadler P. Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation. BMC Bioinforma 2006, 7:67.
-
(2006)
BMC Bioinforma
, vol.7
, pp. 67
-
-
Forst, C.1
Flamm, C.2
Hofacker, I.3
Stadler, P.4
-
57
-
-
35348891430
-
Network-based classification of breast cancer metastasis
-
2063581, 17940530
-
Chuang H, Lee E, Liu Y, Lee D, Ideker T. Network-based classification of breast cancer metastasis. Mol Syst Biol 2007, 3:140. 2063581, 17940530.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 140
-
-
Chuang, H.1
Lee, E.2
Liu, Y.3
Lee, D.4
Ideker, T.5
-
58
-
-
34548400259
-
A systems biology approach for pathway level analysis
-
10.1101/gr.6202607, 1987343, 17785539
-
Draghici S, Khatri P, Tarca A, Amin K, Done A, Voichita C, Georgescu C, Romero R. A systems biology approach for pathway level analysis. Genome Res 2007, 17:1537-1545. 10.1101/gr.6202607, 1987343, 17785539.
-
(2007)
Genome Res
, vol.17
, pp. 1537-1545
-
-
Draghici, S.1
Khatri, P.2
Tarca, A.3
Amin, K.4
Done, A.5
Voichita, C.6
Georgescu, C.7
Romero, R.8
-
59
-
-
33745619564
-
Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions
-
10.1093/bioinformatics/btl145, 16632496
-
Chua H, Sung W, Wong L. Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions. Bioinformatics 2006, 22:1623-1630. 10.1093/bioinformatics/btl145, 16632496.
-
(2006)
Bioinformatics
, vol.22
, pp. 1623-1630
-
-
Chua, H.1
Sung, W.2
Wong, L.3
-
60
-
-
0001330098
-
A general coefficient of similarity and some of its properties
-
Gower J. A general coefficient of similarity and some of its properties. Biometrics 1971, 27:857-871.
-
(1971)
Biometrics
, vol.27
, pp. 857-871
-
-
Gower, J.1
-
61
-
-
38849163722
-
Incorporating gene networks into statistical tests for genomic data via a spatially correlated mixture model
-
10.1093/bioinformatics/btm612, 18083717
-
Wei P, Pan W. Incorporating gene networks into statistical tests for genomic data via a spatially correlated mixture model. Bioinformatics 2008, 24:404-411. 10.1093/bioinformatics/btm612, 18083717.
-
(2008)
Bioinformatics
, vol.24
, pp. 404-411
-
-
Wei, P.1
Pan, W.2
-
62
-
-
57049089078
-
Parameter estimation and determinability analysis applied to Drosophila gap gene circuits
-
10.1186/1752-0509-2-83, 2586632, 18817540
-
Ashyraliyev M, Jaeger J, Blom J. Parameter estimation and determinability analysis applied to Drosophila gap gene circuits. BMC Syst Biol 2008, 2:83. 10.1186/1752-0509-2-83, 2586632, 18817540.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 83
-
-
Ashyraliyev, M.1
Jaeger, J.2
Blom, J.3
-
63
-
-
36448935634
-
TAPPA: topological analysis of pathway phenotype association
-
10.1093/bioinformatics/btm460, 2473868, 17890270
-
Gao S, Wang X. TAPPA: topological analysis of pathway phenotype association. Bioinformatics 2007, 23:3100-3102. 10.1093/bioinformatics/btm460, 2473868, 17890270.
-
(2007)
Bioinformatics
, vol.23
, pp. 3100-3102
-
-
Gao, S.1
Wang, X.2
-
64
-
-
33847129641
-
Gene network interconnectedness and the generalized topological overlap measure
-
Yip A, Horvath S. Gene network interconnectedness and the generalized topological overlap measure. BMC Bioinforma 2007, 8:22.
-
(2007)
BMC Bioinforma
, vol.8
, pp. 22
-
-
Yip, A.1
Horvath, S.2
-
65
-
-
77950910419
-
Revealing strengths and weaknesses of methods for gene network inference
-
10.1073/pnas.0913357107, 2851985, 20308593
-
Marbach D, Prill RJ, Schaffter T, Mattiussi C, Floreano D, Stolovitzky G. Revealing strengths and weaknesses of methods for gene network inference. Proc Natl Acad Sci U S A 2010, 107:6286-6291. 10.1073/pnas.0913357107, 2851985, 20308593.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 6286-6291
-
-
Marbach, D.1
Prill, R.J.2
Schaffter, T.3
Mattiussi, C.4
Floreano, D.5
Stolovitzky, G.6
-
66
-
-
77954484005
-
Revealing differences in gene network inference algorithms on the network level by ensemble methods
-
10.1093/bioinformatics/btq259, 20501553
-
Altay G, Emmert-Streib F. Revealing differences in gene network inference algorithms on the network level by ensemble methods. Bioinformatics 2010, 26:1738-1744. 10.1093/bioinformatics/btq259, 20501553.
-
(2010)
Bioinformatics
, vol.26
, pp. 1738-1744
-
-
Altay, G.1
Emmert-Streib, F.2
-
67
-
-
36148930302
-
Consistency analysis of metabolic correlation networks
-
10.1186/1752-0509-1-44, 2077335, 17892579
-
Müller-Linow M, Weckwerth W, Hütt MT. Consistency analysis of metabolic correlation networks. BMC Syst Biol 2007, 1:44. 10.1186/1752-0509-1-44, 2077335, 17892579.
-
(2007)
BMC Syst Biol
, vol.1
, pp. 44
-
-
Müller-Linow, M.1
Weckwerth, W.2
Hütt, M.T.3
-
69
-
-
39149116715
-
Generating confidence intervals on biological networks
-
Thorne T, Stumpf M. Generating confidence intervals on biological networks. BMC Bioinforma 2007, 8:467.
-
(2007)
BMC Bioinforma
, vol.8
, pp. 467
-
-
Thorne, T.1
Stumpf, M.2
-
70
-
-
0034732875
-
Pros and cons of permutation testing in clinical trials
-
10.1002/(SICI)1097-0258(20000530)19:10<1319::AID-SIM490>3.0.CO;2-0, 10814980
-
Berger VW. Pros and cons of permutation testing in clinical trials. Statistics in Medicine 2000, 19:1319-1328. 10.1002/(SICI)1097-0258(20000530)19:10<1319::AID-SIM490>3.0.CO;2-0, 10814980.
-
(2000)
Statistics in Medicine
, vol.19
, pp. 1319-1328
-
-
Berger, V.W.1
-
71
-
-
34548442971
-
Weighted gene coexpression network analysis strategies applied to mouse weight
-
10.1007/s00335-007-9043-3, 1998880, 17668265
-
Fuller TF, Ghazalpour A, Aten JE, Drake TA, Lusis AJ, Horvath S. Weighted gene coexpression network analysis strategies applied to mouse weight. Mammalian Genome 2007, 18:463-472. 10.1007/s00335-007-9043-3, 1998880, 17668265.
-
(2007)
Mammalian Genome
, vol.18
, pp. 463-472
-
-
Fuller, T.F.1
Ghazalpour, A.2
Aten, J.E.3
Drake, T.A.4
Lusis, A.J.5
Horvath, S.6
-
72
-
-
60149089400
-
Differential dependency network analysis to identify condition-specific topological changes in biological networks
-
10.1093/bioinformatics/btn660, 2642641, 19112081
-
Zhang B, Li H, Riggins RB, Zhan M, Xuan J, Zhang Z, Hoffman EP, Clarke R, Wang Y. Differential dependency network analysis to identify condition-specific topological changes in biological networks. Bioinformatics 2009, 25:526-532. 10.1093/bioinformatics/btn660, 2642641, 19112081.
-
(2009)
Bioinformatics
, vol.25
, pp. 526-532
-
-
Zhang, B.1
Li, H.2
Riggins, R.B.3
Zhan, M.4
Xuan, J.5
Zhang, Z.6
Hoffman, E.P.7
Clarke, R.8
Wang, Y.9
-
73
-
-
34447512704
-
Understanding network concepts in modules
-
10.1186/1752-0509-1-24, 3238286, 17547772
-
Dong J, Horvath S. Understanding network concepts in modules. BMC Syst Biol 2007, 1:24. 10.1186/1752-0509-1-24, 3238286, 17547772.
-
(2007)
BMC Syst Biol
, vol.1
, pp. 24
-
-
Dong, J.1
Horvath, S.2
-
74
-
-
41049102359
-
Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks
-
10.1186/1752-0509-2-17, 2268660, 18261202
-
Oliveira A, Patil K, Nielsen J. Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks. BMC Syst Biol 2008, 2:17. 10.1186/1752-0509-2-17, 2268660, 18261202.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 17
-
-
Oliveira, A.1
Patil, K.2
Nielsen, J.3
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