메뉴 건너뛰기




Volumn 1115, Issue , 2007, Pages 116-131

The gap gene system of Drosophila melanogaster: Model-fitting and validation

Author keywords

Differential equation; Gene expression; Genetic network; Network inference; Partial differential equation; Time series

Indexed keywords

ALGORITHM; CONFERENCE PAPER; DROSOPHILA MELANOGASTER; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENE STRUCTURE; GENETIC ANALYSIS; MEDICAL RESEARCH; PROMOTER REGION; STATISTICAL ANALYSIS;

EID: 36248936063     PISSN: 00778923     EISSN: 17496632     Source Type: Book Series    
DOI: 10.1196/annals.1407.015     Document Type: Conference Paper
Times cited : (4)

References (34)
  • 1
    • 0030281034 scopus 로고    scopus 로고
    • From gradients to stripes in Drosophila embryogenesis: Filling in the gaps
    • RIVERA-POMAR, R. & H. J̈ACKLE. 1996. From gradients to stripes in Drosophila embryogenesis: filling in the gaps. Trends Genet. 12: 478-483.
    • (1996) Trends Genet , vol.12 , pp. 478-483
    • RIVERA-POMAR, R.1    J̈ACKLE, H.2
  • 2
    • 0035928464 scopus 로고    scopus 로고
    • A logical analysis of the gap gene system
    • SANCHEZ, L. & D. THIEFFRY. 2001. A logical analysis of the gap gene system. J. Theor. Biol. 211: 115-141.
    • (2001) J. Theor. Biol , vol.211 , pp. 115-141
    • SANCHEZ, L.1    THIEFFRY, D.2
  • 3
    • 4644363054 scopus 로고    scopus 로고
    • Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster
    • JAEGER, J., M. BLAGOV, D. KOSMAN, et al. 2004. Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster. Genetics 167: 1721-1737.
    • (2004) Genetics , vol.167 , pp. 1721-1737
    • JAEGER, J.1    BLAGOV, M.2    KOSMAN, D.3
  • 4
    • 3142734333 scopus 로고    scopus 로고
    • Dynamic control of positional information in the early Drosophila embryo
    • JAEGER, J., S. SURKOVA, M. BLAGOV, et al. 2004. Dynamic control of positional information in the early Drosophila embryo. Nature 430: 368-371.
    • (2004) Nature , vol.430 , pp. 368-371
    • JAEGER, J.1    SURKOVA, S.2    BLAGOV, M.3
  • 5
    • 33646901020 scopus 로고    scopus 로고
    • Reverse engineering the gap gene network of Drosophila melanogaster. PLoS
    • PERKINS, T.J., J. JAEGER, J. REINITZ & L. GLASS. 2006. Reverse engineering the gap gene network of Drosophila melanogaster. PLoS Comp. Biol. 2: e51.
    • (2006) Comp. Biol , vol.2
    • PERKINS, T.J.1    JAEGER, J.2    REINITZ, J.3    GLASS, L.4
  • 6
    • 3142591896 scopus 로고    scopus 로고
    • A database for management of gene expression data in situ
    • POUSTELNIKOVA, E., A. PISAREV, M. BLAGOV, et al. 2004. A database for management of gene expression data in situ. Bioinformatics 20: 2212-2221.
    • (2004) Bioinformatics , vol.20 , pp. 2212-2221
    • POUSTELNIKOVA, E.1    PISAREV, A.2    BLAGOV, M.3
  • 7
    • 19344375742 scopus 로고    scopus 로고
    • Transcriptional control in the segmentation gene network of Drosophila
    • SCHROEDER, M.D., M. PEARCE, J. FAK, et al. 2004. Transcriptional control in the segmentation gene network of Drosophila. PLoS Biol. 2: e271.
    • (2004) PLoS Biol , vol.2
    • SCHROEDER, M.D.1    PEARCE, M.2    FAK, J.3
  • 8
    • 33749137281 scopus 로고    scopus 로고
    • Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene
    • JANSSENS, H., S. HOU, J. JAEGER, et al. 2006. Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene. Nat. Genet. 36: 1159-1165.
    • (2006) Nat. Genet , vol.36 , pp. 1159-1165
    • JANSSENS, H.1    HOU, S.2    JAEGER, J.3
  • 9
    • 0023635756 scopus 로고
    • The molecular basis for metameric pattern in the Drosophila embryo
    • AKAM, M. 1987. The molecular basis for metameric pattern in the Drosophila embryo. Development 101: 1-22.
    • (1987) Development , vol.101 , pp. 1-22
    • AKAM, M.1
  • 10
    • 0024075160 scopus 로고
    • The molecular genetics of embryonic pattern formation in Drosophila
    • INGHAM, P.W. 1988. The molecular genetics of embryonic pattern formation in Drosophila. Nature 335: 25-34.
    • (1988) Nature , vol.335 , pp. 25-34
    • INGHAM, P.W.1
  • 11
    • 36248937706 scopus 로고    scopus 로고
    • BEUTER, A., L. GLASS, M.C. MACKAY, et al. 2003. Nonlinear Dynamics in Physiology and Medicine. Springer-Verlag. New York.
    • BEUTER, A., L. GLASS, M.C. MACKAY, et al. 2003. Nonlinear Dynamics in Physiology and Medicine. Springer-Verlag. New York.
  • 13
    • 0029375851 scopus 로고
    • Gradient calculations for dynamic recurrent neural networks: A survey
    • PEARLMUTTER, B.A. 1995. Gradient calculations for dynamic recurrent neural networks: a survey. IEEE Trans. Neural Networks 6: 1212-1228.
    • (1995) IEEE Trans. Neural Networks , vol.6 , pp. 1212-1228
    • PEARLMUTTER, B.A.1
  • 14
    • 33749553474 scopus 로고
    • Combinatorial and topological methods in nonlinear chemical kinetics
    • GLASS. L. 1975. Combinatorial and topological methods in nonlinear chemical kinetics. J. Chem. Phys. 63: 1325-1335.
    • (1975) J. Chem. Phys , vol.63 , pp. 1325-1335
    • GLASS, L.1
  • 15
    • 0034315476 scopus 로고    scopus 로고
    • Analysis of continuous-time switching networks
    • EDWARDS, R. 2000. Analysis of continuous-time switching networks. Physica D 146: 165-199.
    • (2000) Physica D , vol.146 , pp. 165-199
    • EDWARDS, R.1
  • 16
    • 0013387906 scopus 로고    scopus 로고
    • Symbolic dynamics and computation in model gene networks
    • EDWARDS, R., H.T. SIEGELMANN, K. AZIZA & L. GLASS. 2001. Symbolic dynamics and computation in model gene networks. Chaos 11: 160-169.
    • (2001) Chaos , vol.11 , pp. 160-169
    • EDWARDS, R.1    SIEGELMANN, H.T.2    AZIZA, K.3    GLASS, L.4
  • 17
    • 0345269975 scopus 로고    scopus 로고
    • Genetic network analyzer: Qualitative simulation of genetic regulatory networks
    • DE JONG, H., J. GEISELMANN, C. HERNANDEZ & M. PAGE. 2003. Genetic network analyzer: qualitative simulation of genetic regulatory networks. Bioinformatics 19: 336-344.
    • (2003) Bioinformatics , vol.19 , pp. 336-344
    • DE JONG, H.1    GEISELMANN, J.2    HERNANDEZ, C.3    PAGE, M.4
  • 18
    • 1242333310 scopus 로고    scopus 로고
    • Qualitative simulation of genetic regulatory networks using piecewise-linear models
    • DE JONG, H., J.-L. GOUZE, C. HERNANDEZ, et al. 2004. Qualitative simulation of genetic regulatory networks using piecewise-linear models. Bull. Math. Biol. 66: 301-340.
    • (2004) Bull. Math. Biol , vol.66 , pp. 301-340
    • DE JONG, H.1    GOUZE, J.-L.2    HERNANDEZ, C.3
  • 19
    • 1242345225 scopus 로고    scopus 로고
    • Qualitative simulation of the initiation of sporulation in Bacillus subtilis
    • DE JONGV, H., J. GEISELMANN, G. BATT, et al. 2004. Qualitative simulation of the initiation of sporulation in Bacillus subtilis. Bull. Math. Biol. 66: 261-300.
    • (2004) Bull. Math. Biol , vol.66 , pp. 261-300
    • DE JONGV, H.1    GEISELMANN, J.2    BATT, G.3
  • 20
    • 33646377419 scopus 로고    scopus 로고
    • Qualitative simulation of the carbon starvation response in Escherichia coli
    • ROPERS, D., H. DEJONG, M. PAGE, et al. 2006. Qualitative simulation of the carbon starvation response in Escherichia coli. BioSystems 84: 124-152.
    • (2006) BioSystems , vol.84 , pp. 124-152
    • ROPERS, D.1    DEJONG, H.2    PAGE, M.3
  • 21
    • 4143051643 scopus 로고    scopus 로고
    • Inferring models of gene expression dynamics
    • PERKINS, T.J., M.T. HALLETT & L. GLASS. 2004. Inferring models of gene expression dynamics. J. Theor. Biol. 230: 289-299.
    • (2004) J. Theor. Biol , vol.230 , pp. 289-299
    • PERKINS, T.J.1    HALLETT, M.T.2    GLASS, L.3
  • 22
    • 33645998778 scopus 로고    scopus 로고
    • Dynamical properties of model gene networks and implications for the inverse problem
    • PERKINS, T.J., M. HALLETT & L. GLASS. 2006. Dynamical properties of model gene networks and implications for the inverse problem. BioSystems 84: 115-123.
    • (2006) BioSystems , vol.84 , pp. 115-123
    • PERKINS, T.J.1    HALLETT, M.2    GLASS, L.3
  • 23
    • 29044447781 scopus 로고    scopus 로고
    • Chaotic dynamics in an electronic model of a genetic network
    • GLASS, L., T.J. PERKINS, J. MASON, et al. 2005. Chaotic dynamics in an electronic model of a genetic network. J. Stat. Phys. 121: 969-994.
    • (2005) J. Stat. Phys , vol.121 , pp. 969-994
    • GLASS, L.1    PERKINS, T.J.2    MASON, J.3
  • 24
    • 33745796556 scopus 로고    scopus 로고
    • Reconstruction of switching thresholds in piecewise-affine models of genetic regulatory networks
    • Hybrid Systems: Computation and Control, HSCC 2006, Springer-Verlag. New York
    • DRULHE, S., G. FERRARI-TRECATE, H. DEJONG & A. VIARI. 2006. Reconstruction of switching thresholds in piecewise-affine models of genetic regulatory networks. In Hybrid Systems: Computation and Control, HSCC 2006, Lecture Notes in Computer Science 3927: 184-199. Springer-Verlag. New York.
    • (2006) Lecture Notes in Computer Science , vol.3927 , pp. 184-199
    • DRULHE, S.1    FERRARI-TRECATE, G.2    DEJONG, H.3    VIARI, A.4
  • 26
    • 0342625542 scopus 로고    scopus 로고
    • Parallel simulated annealing by mixing of states
    • CHU, K.W., Y. DENG & J. REINITZ. 1999. Parallel simulated annealing by mixing of states. J. Comp. Phys. 148: 646-662.
    • (1999) J. Comp. Phys , vol.148 , pp. 646-662
    • CHU, K.W.1    DENG, Y.2    REINITZ, J.3
  • 27
    • 0028897360 scopus 로고
    • Mechanism of eve stripe formation
    • REINITZ J. & D.H. SHARP. 1995. Mechanism of eve stripe formation. Mech. Devel. 49: 133-158.
    • (1995) Mech. Devel , vol.49 , pp. 133-158
    • REINITZ, J.1    SHARP, D.H.2
  • 30
    • 0031814029 scopus 로고    scopus 로고
    • Rapid preparation of a panel of polyclonal antibodies to Drosophila segmentation proteins
    • KOSMAN, D., S. SMALL & J. REINITZ. 1998. Rapid preparation of a panel of polyclonal antibodies to Drosophila segmentation proteins. Devel. Genes Evol. 208: 290-294.
    • (1998) Devel. Genes Evol , vol.208 , pp. 290-294
    • KOSMAN, D.1    SMALL, S.2    REINITZ, J.3
  • 31
    • 0035115973 scopus 로고    scopus 로고
    • Registration of the expression patterns of Drosophila segmentation genes by two independent methods
    • MYASNIKOVA, E., A. SAMSONOVA, K. KOZLOV, et al. 2001. Registration of the expression patterns of Drosophila segmentation genes by two independent methods. Bioinformatics 17: 3-12,
    • (2001) Bioinformatics , vol.17 , pp. 3-12
    • MYASNIKOVA, E.1    SAMSONOVA, A.2    KOZLOV, K.3
  • 32
    • 22844442948 scopus 로고    scopus 로고
    • A high-throughput method for quantifying gene expression data from early Drosophila embryos
    • JANSSENS, H., D. KOSMAN, C.E. VANARIO-ALONSO, et al. 2005. A high-throughput method for quantifying gene expression data from early Drosophila embryos. Devel. Genes Evol. 215: 374-381.
    • (2005) Devel. Genes Evol , vol.215 , pp. 374-381
    • JANSSENS, H.1    KOSMAN, D.2    VANARIO-ALONSO, C.E.3
  • 33
    • 21344474605 scopus 로고    scopus 로고
    • Removal of background signal from in situ data on the expression of segmentation gene in Drosophila
    • MYASNIKOVA, E., M. SAMSONOVA, D. KOSMAN & J. REINITZ. 2005. Removal of background signal from in situ data on the expression of segmentation gene in Drosophila. Devel. Genes Evol. 215: 320-326.
    • (2005) Devel. Genes Evol , vol.215 , pp. 320-326
    • MYASNIKOVA, E.1    SAMSONOVA, M.2    KOSMAN, D.3    REINITZ, J.4
  • 34
    • 0025471633 scopus 로고
    • Fundamental concepts of qualitative probabilistic networks
    • WELLMAN. M.P. 1990. Fundamental concepts of qualitative probabilistic networks. Art. Intel. 44: 257-303.
    • (1990) Art. Intel , vol.44 , pp. 257-303
    • WELLMAN, M.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.