-
1
-
-
0036013593
-
Statistical mechanics of complex networks
-
Albert, R. and Barabási, A.L. (2002) Statistical mechanics of complex networks. Rev. Mod. Phys., 74, 47.
-
(2002)
Rev. Mod. Phys.
, vol.74
, pp. 47
-
-
Albert, R.1
Barabási, A.L.2
-
3
-
-
20744456475
-
Correlation between gene expression profiles and protein-protein interactions within and across genomes
-
Bhardwaj, N. and Lu, H. (2005) Correlation between gene expression profiles and protein-protein interactions within and across genomes. Bioinformatics, 21, 2730-2738.
-
(2005)
Bioinformatics
, vol.21
, pp. 2730-2738
-
-
Bhardwaj, N.1
Lu, H.2
-
4
-
-
38549173606
-
The BioGRID Interaction Database: 2008 update
-
Breitkreutz, B.-J. et al. (2008) The BioGRID Interaction Database: 2008 update. Nucleic Acids Res., 36, D637-D640.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Breitkreutz, B.-J.1
-
5
-
-
23644434284
-
Genetic interactions between polymorphisms that affect gene expression in yeast
-
Brem, R.B. et al. (2005) Genetic interactions between polymorphisms that affect gene expression in yeast. Nature, 436, 701-703.
-
(2005)
Nature
, vol.436
, pp. 701-703
-
-
Brem, R.B.1
-
6
-
-
0037177625
-
Genetic dissection of transcriptional regulation in budding yeast
-
Brem, R.B. et al. (2002) Genetic dissection of transcriptional regulation in budding yeast. Science, 296, 752-755.
-
(2002)
Science
, vol.296
, pp. 752-755
-
-
Brem, R.B.1
-
8
-
-
0035733690
-
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
-
Ge, H. et al. (2001) Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nat. Genet., 49, 482-486.
-
(2001)
Nat. Genet.
, vol.49
, pp. 482-486
-
-
Ge, H.1
-
9
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison, C.T. et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature, 431, 99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
-
10
-
-
50949084896
-
Geometric interpretation of gene coexpression network analysis
-
Horvath, S. and Dong, J. (2008) Geometric interpretation of gene coexpression network analysis. PLoS Comput. Biol., 4, e1000117.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Horvath, S.1
Dong, J.2
-
11
-
-
0036141992
-
Relating whole-genome expression data with protein-protein interactions
-
Jansen, R. et al. (2002) Relating whole-genome expression data with protein-protein interactions. Genome Res., 12, 37-46.
-
(2002)
Genome Res.
, vol.12
, pp. 37-46
-
-
Jansen, R.1
-
12
-
-
58149193234
-
STRING 8- a global view on protein in their functional interactions in 630 organisms
-
Jensen, L.J. et al. (2009) STRING 8- a global view on protein in their functional interactions in 630 organisms. Nucleic Acids Res., 37, D412-D416.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Jensen, L.J.1
-
13
-
-
33645568358
-
Gradient directed regularization for sparse Gaussian concentration graphs, with applications to inference of genetic networks
-
Li, H. and Gui, J. (2006) Gradient directed regularization for sparse Gaussian concentration graphs, with applications to inference of genetic networks. Biostatistics, 7, 302-317.
-
(2006)
Biostatistics
, vol.7
, pp. 302-317
-
-
Li, H.1
Gui, J.2
-
14
-
-
33747163541
-
High-dimensional graphs and variable selection with the lasso
-
Mainshausen, N. and Buhlmann, P. (2006) High-dimensional graphs and variable selection with the lasso. Annals of Statistics, 34, 1436-1462.
-
(2006)
Annals of Statistics
, vol.34
, pp. 1436-1462
-
-
Mainshausen, N.1
Buhlmann, P.2
-
15
-
-
0037224447
-
Does mapping reveal correlation between gene expression and protein-protein interaction?
-
Mrowka, R. et al. (2003) Does mapping reveal correlation between gene expression and protein-protein interaction? Nat. Genet., 33, 15-16.
-
(2003)
Nat. Genet.
, vol.33
, pp. 15-16
-
-
Mrowka, R.1
-
16
-
-
0038718854
-
The structure and function of complex networks
-
Newman, M.E.J. (2003a) The structure and function of complex networks. SIAM Review, 45, 167-256.
-
(2003)
SIAM Review
, vol.45
, pp. 167-256
-
-
Newman, M.E.J.1
-
17
-
-
0038752085
-
Mixing patterns in networks
-
Newman, M.E.J. (2003b) Mixing patterns in networks. Phys. Rev. E, 67, 026126.
-
(2003)
Phys. Rev. E
, vol.67
, pp. 026126
-
-
Newman, M.E.J.1
-
18
-
-
61449181084
-
Fast calculation of pairwise mutual information for gene regulatory network reconstruction
-
Qiu, P. et al. (2009) Fast calculation of pairwise mutual information for gene regulatory network reconstruction. Comput. Methods Programs Biomed., 94, 177-180.
-
(2009)
Comput. Methods Programs Biomed.
, vol.94
, pp. 177-180
-
-
Qiu, P.1
-
19
-
-
15944364151
-
An empirical Bayes approach to inferring large-scale gene association networks
-
Schafer, J. and Strimmer, K. (2005a)An empirical Bayes approach to inferring large-scale gene association networks. Bioinformatics, 21, 754-764.
-
(2005)
Bioinformatics
, vol.21
, pp. 754-764
-
-
Schafer, J.1
Strimmer, K.2
-
20
-
-
27844521293
-
A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics
-
Schafer, J. and Strimmer, K. (2005b) A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics. Stat. Appl. Genet. Mol. Biol., 4, 32.
-
(2005)
Stat. Appl. Genet. Mol. Biol.
, vol.4
, pp. 32
-
-
Schafer, J.1
Strimmer, K.2
-
21
-
-
0003009091
-
Automated modelling of signal transduction networks
-
Steffen, M. et al. (2002) Automated modelling of signal transduction networks. BMC Bioinformatics, 3, 34.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 34
-
-
Steffen, M.1
-
22
-
-
0141993704
-
Agene-coexpression network for global discovery of conserved genetic modules
-
Stuart, J.M. et al. (2003)Agene-coexpression network for global discovery of conserved genetic modules. Science, 302, 249-255.
-
(2003)
Science
, vol.302
, pp. 249-255
-
-
Stuart, J.M.1
-
23
-
-
41349090299
-
Large-scale topological and dynamical properties of the Internet
-
Vázquez, A. et al. (2002) Large-scale topological and dynamical properties of the Internet. Phys. Rev. E, 65, 066130.
-
(2002)
Phys. Rev. E
, vol.65
, pp. 066130
-
-
Vázquez, A.1
-
24
-
-
13444249988
-
STRING: known and predicted protein-protein associations, integrated and transferred across organisms
-
von Mering, C., Jensen, L.J. et al. (2005) STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res., 33, D433-D437.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
von Mering, C.1
Jensen, L.J.2
-
25
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
Watts, D.J. and Strogatz, S.H. (1998) Collective dynamics of 'small-world' networks. Nature, 393, 409-410.
-
(1998)
Nature
, vol.393
, pp. 409-410
-
-
Watts, D.J.1
Strogatz, S.H.2
-
26
-
-
34547852219
-
A graph-based approach to systematically reconstruct human transcriptional regulatory modules
-
Yan, X. et al. (2007) A graph-based approach to systematically reconstruct human transcriptional regulatory modules. Bioinformatics (ISMB 2007), 23, i577-i586.
-
(2007)
Bioinformatics (ISMB 2007)
, vol.23
-
-
Yan, X.1
-
27
-
-
23944458138
-
A general framework for weighted gene co-expression network analysis
-
Article 17
-
Zhang, B. and Horvath, S. (2005) A general framework for weighted gene co-expression network analysis. Stat. Appl. Genet. Mol. Biol., 4, Article 17.
-
(2005)
Stat. Appl. Genet. Mol. Biol.
, vol.4
-
-
Zhang, B.1
Horvath, S.2
|