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Volumn 26, Issue 2, 2010, Pages 205-214

Co-expression networks: Graph properties and topological comparisons

Author keywords

[No Author keywords available]

Indexed keywords

SACCHAROMYCES CEREVISIAE;

EID: 77950512326     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp632     Document Type: Article
Times cited : (55)

References (27)
  • 1
    • 0036013593 scopus 로고    scopus 로고
    • Statistical mechanics of complex networks
    • Albert, R. and Barabási, A.L. (2002) Statistical mechanics of complex networks. Rev. Mod. Phys., 74, 47.
    • (2002) Rev. Mod. Phys. , vol.74 , pp. 47
    • Albert, R.1    Barabási, A.L.2
  • 3
    • 20744456475 scopus 로고    scopus 로고
    • Correlation between gene expression profiles and protein-protein interactions within and across genomes
    • Bhardwaj, N. and Lu, H. (2005) Correlation between gene expression profiles and protein-protein interactions within and across genomes. Bioinformatics, 21, 2730-2738.
    • (2005) Bioinformatics , vol.21 , pp. 2730-2738
    • Bhardwaj, N.1    Lu, H.2
  • 4
    • 38549173606 scopus 로고    scopus 로고
    • The BioGRID Interaction Database: 2008 update
    • Breitkreutz, B.-J. et al. (2008) The BioGRID Interaction Database: 2008 update. Nucleic Acids Res., 36, D637-D640.
    • (2008) Nucleic Acids Res. , vol.36
    • Breitkreutz, B.-J.1
  • 5
    • 23644434284 scopus 로고    scopus 로고
    • Genetic interactions between polymorphisms that affect gene expression in yeast
    • Brem, R.B. et al. (2005) Genetic interactions between polymorphisms that affect gene expression in yeast. Nature, 436, 701-703.
    • (2005) Nature , vol.436 , pp. 701-703
    • Brem, R.B.1
  • 6
    • 0037177625 scopus 로고    scopus 로고
    • Genetic dissection of transcriptional regulation in budding yeast
    • Brem, R.B. et al. (2002) Genetic dissection of transcriptional regulation in budding yeast. Science, 296, 752-755.
    • (2002) Science , vol.296 , pp. 752-755
    • Brem, R.B.1
  • 8
    • 0035733690 scopus 로고    scopus 로고
    • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
    • Ge, H. et al. (2001) Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nat. Genet., 49, 482-486.
    • (2001) Nat. Genet. , vol.49 , pp. 482-486
    • Ge, H.1
  • 9
    • 4544352942 scopus 로고    scopus 로고
    • Transcriptional regulatory code of a eukaryotic genome
    • Harbison, C.T. et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature, 431, 99-104.
    • (2004) Nature , vol.431 , pp. 99-104
    • Harbison, C.T.1
  • 10
    • 50949084896 scopus 로고    scopus 로고
    • Geometric interpretation of gene coexpression network analysis
    • Horvath, S. and Dong, J. (2008) Geometric interpretation of gene coexpression network analysis. PLoS Comput. Biol., 4, e1000117.
    • (2008) PLoS Comput. Biol. , vol.4
    • Horvath, S.1    Dong, J.2
  • 11
    • 0036141992 scopus 로고    scopus 로고
    • Relating whole-genome expression data with protein-protein interactions
    • Jansen, R. et al. (2002) Relating whole-genome expression data with protein-protein interactions. Genome Res., 12, 37-46.
    • (2002) Genome Res. , vol.12 , pp. 37-46
    • Jansen, R.1
  • 12
    • 58149193234 scopus 로고    scopus 로고
    • STRING 8- a global view on protein in their functional interactions in 630 organisms
    • Jensen, L.J. et al. (2009) STRING 8- a global view on protein in their functional interactions in 630 organisms. Nucleic Acids Res., 37, D412-D416.
    • (2009) Nucleic Acids Res. , vol.37
    • Jensen, L.J.1
  • 13
    • 33645568358 scopus 로고    scopus 로고
    • Gradient directed regularization for sparse Gaussian concentration graphs, with applications to inference of genetic networks
    • Li, H. and Gui, J. (2006) Gradient directed regularization for sparse Gaussian concentration graphs, with applications to inference of genetic networks. Biostatistics, 7, 302-317.
    • (2006) Biostatistics , vol.7 , pp. 302-317
    • Li, H.1    Gui, J.2
  • 14
    • 33747163541 scopus 로고    scopus 로고
    • High-dimensional graphs and variable selection with the lasso
    • Mainshausen, N. and Buhlmann, P. (2006) High-dimensional graphs and variable selection with the lasso. Annals of Statistics, 34, 1436-1462.
    • (2006) Annals of Statistics , vol.34 , pp. 1436-1462
    • Mainshausen, N.1    Buhlmann, P.2
  • 15
    • 0037224447 scopus 로고    scopus 로고
    • Does mapping reveal correlation between gene expression and protein-protein interaction?
    • Mrowka, R. et al. (2003) Does mapping reveal correlation between gene expression and protein-protein interaction? Nat. Genet., 33, 15-16.
    • (2003) Nat. Genet. , vol.33 , pp. 15-16
    • Mrowka, R.1
  • 16
    • 0038718854 scopus 로고    scopus 로고
    • The structure and function of complex networks
    • Newman, M.E.J. (2003a) The structure and function of complex networks. SIAM Review, 45, 167-256.
    • (2003) SIAM Review , vol.45 , pp. 167-256
    • Newman, M.E.J.1
  • 17
    • 0038752085 scopus 로고    scopus 로고
    • Mixing patterns in networks
    • Newman, M.E.J. (2003b) Mixing patterns in networks. Phys. Rev. E, 67, 026126.
    • (2003) Phys. Rev. E , vol.67 , pp. 026126
    • Newman, M.E.J.1
  • 18
    • 61449181084 scopus 로고    scopus 로고
    • Fast calculation of pairwise mutual information for gene regulatory network reconstruction
    • Qiu, P. et al. (2009) Fast calculation of pairwise mutual information for gene regulatory network reconstruction. Comput. Methods Programs Biomed., 94, 177-180.
    • (2009) Comput. Methods Programs Biomed. , vol.94 , pp. 177-180
    • Qiu, P.1
  • 19
    • 15944364151 scopus 로고    scopus 로고
    • An empirical Bayes approach to inferring large-scale gene association networks
    • Schafer, J. and Strimmer, K. (2005a)An empirical Bayes approach to inferring large-scale gene association networks. Bioinformatics, 21, 754-764.
    • (2005) Bioinformatics , vol.21 , pp. 754-764
    • Schafer, J.1    Strimmer, K.2
  • 20
    • 27844521293 scopus 로고    scopus 로고
    • A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics
    • Schafer, J. and Strimmer, K. (2005b) A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics. Stat. Appl. Genet. Mol. Biol., 4, 32.
    • (2005) Stat. Appl. Genet. Mol. Biol. , vol.4 , pp. 32
    • Schafer, J.1    Strimmer, K.2
  • 21
    • 0003009091 scopus 로고    scopus 로고
    • Automated modelling of signal transduction networks
    • Steffen, M. et al. (2002) Automated modelling of signal transduction networks. BMC Bioinformatics, 3, 34.
    • (2002) BMC Bioinformatics , vol.3 , pp. 34
    • Steffen, M.1
  • 22
    • 0141993704 scopus 로고    scopus 로고
    • Agene-coexpression network for global discovery of conserved genetic modules
    • Stuart, J.M. et al. (2003)Agene-coexpression network for global discovery of conserved genetic modules. Science, 302, 249-255.
    • (2003) Science , vol.302 , pp. 249-255
    • Stuart, J.M.1
  • 23
    • 41349090299 scopus 로고    scopus 로고
    • Large-scale topological and dynamical properties of the Internet
    • Vázquez, A. et al. (2002) Large-scale topological and dynamical properties of the Internet. Phys. Rev. E, 65, 066130.
    • (2002) Phys. Rev. E , vol.65 , pp. 066130
    • Vázquez, A.1
  • 24
    • 13444249988 scopus 로고    scopus 로고
    • STRING: known and predicted protein-protein associations, integrated and transferred across organisms
    • von Mering, C., Jensen, L.J. et al. (2005) STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res., 33, D433-D437.
    • (2005) Nucleic Acids Res. , vol.33
    • von Mering, C.1    Jensen, L.J.2
  • 25
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of 'small-world' networks
    • Watts, D.J. and Strogatz, S.H. (1998) Collective dynamics of 'small-world' networks. Nature, 393, 409-410.
    • (1998) Nature , vol.393 , pp. 409-410
    • Watts, D.J.1    Strogatz, S.H.2
  • 26
    • 34547852219 scopus 로고    scopus 로고
    • A graph-based approach to systematically reconstruct human transcriptional regulatory modules
    • Yan, X. et al. (2007) A graph-based approach to systematically reconstruct human transcriptional regulatory modules. Bioinformatics (ISMB 2007), 23, i577-i586.
    • (2007) Bioinformatics (ISMB 2007) , vol.23
    • Yan, X.1
  • 27
    • 23944458138 scopus 로고    scopus 로고
    • A general framework for weighted gene co-expression network analysis
    • Article 17
    • Zhang, B. and Horvath, S. (2005) A general framework for weighted gene co-expression network analysis. Stat. Appl. Genet. Mol. Biol., 4, Article 17.
    • (2005) Stat. Appl. Genet. Mol. Biol. , vol.4
    • Zhang, B.1    Horvath, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.