-
1
-
-
4944242891
-
Polyamines and cancer: old molecules, new understanding
-
Gerner EW, Meyskens FL Jr, (2004) Polyamines and cancer: old molecules, new understanding. Nat Rev Cancer 4: 781-792.
-
(2004)
Nat Rev Cancer
, vol.4
, pp. 781-792
-
-
Gerner, E.W.1
Meyskens Jr., F.L.2
-
3
-
-
0348077408
-
X-linked spermine synthase gene (SMS) defect: the first polyamine deficiency syndrome
-
Cason AL, Ikeguchi Y, Skinner C, Wood TC, Holden KR, et al. (2003) X-linked spermine synthase gene (SMS) defect: the first polyamine deficiency syndrome. European journal of human genetics 11: 937-944.
-
(2003)
European Journal of Human Genetics
, vol.11
, pp. 937-944
-
-
Cason, A.L.1
Ikeguchi, Y.2
Skinner, C.3
Wood, T.C.4
Holden, K.R.5
-
4
-
-
47049102867
-
Crystal structure of human spermine synthase: implications of substrate binding and catalytic mechanism
-
Wu H, Min J, Zeng H, McCloskey DE, Ikeguchi Y, et al. (2008) Crystal structure of human spermine synthase: implications of substrate binding and catalytic mechanism. J Biol Chem 283: 16135-16146.
-
(2008)
J Biol Chem
, vol.283
, pp. 16135-16146
-
-
Wu, H.1
Min, J.2
Zeng, H.3
McCloskey, D.E.4
Ikeguchi, Y.5
-
5
-
-
57349090665
-
Very fast prediction and rationalization of pKa values for protein-ligand complexes
-
Bas DC, Rogers DM, Jensen JH, (2008) Very fast prediction and rationalization of pKa values for protein-ligand complexes. Proteins: Structure, Function, and Bioinformatics 73: 765-783.
-
(2008)
Proteins: Structure, Function, and Bioinformatics
, vol.73
, pp. 765-783
-
-
Bas, D.C.1
Rogers, D.M.2
Jensen, J.H.3
-
6
-
-
50049128469
-
New SMS mutation leads to a striking reduction in spermine synthase protein function and a severe form of Snyder-Robinson X-linked recessive mental retardation syndrome
-
de Alencastro G, McCloskey DE, Kliemann SE, Maranduba CM, Pegg AE, et al. (2008) New SMS mutation leads to a striking reduction in spermine synthase protein function and a severe form of Snyder-Robinson X-linked recessive mental retardation syndrome. J Med Genet 45: 539-543.
-
(2008)
J Med Genet
, vol.45
, pp. 539-543
-
-
de Alencastro, G.1
McCloskey, D.E.2
Kliemann, S.E.3
Maranduba, C.M.4
Pegg, A.E.5
-
7
-
-
61749092136
-
A missense mutation, p.V132G, in the X-linked spermine synthase gene (SMS) causes Snyder-Robinson syndrome
-
Becerra-Solano LE, Butler J, Castaneda-Cisneros G, McCloskey DE, Wang X, et al. (2009) A missense mutation, p.V132G, in the X-linked spermine synthase gene (SMS) causes Snyder-Robinson syndrome. Am J Med Genet A 149A: 328-335.
-
(2009)
Am J Med Genet A
, vol.149 A
, pp. 328-335
-
-
Becerra-Solano, L.E.1
Butler, J.2
Castaneda-Cisneros, G.3
McCloskey, D.E.4
Wang, X.5
-
8
-
-
79956280817
-
Spermine synthase deficiency resulting in X-linked intellectual disability (Snyder-Robinson syndrome)
-
Schwartz CE, Wang X, Stevenson RE, Pegg AE, (2011) Spermine synthase deficiency resulting in X-linked intellectual disability (Snyder-Robinson syndrome). Methods Mol Biol 720: 437-445.
-
(2011)
Methods Mol Biol
, vol.720
, pp. 437-445
-
-
Schwartz, C.E.1
Wang, X.2
Stevenson, R.E.3
Pegg, A.E.4
-
9
-
-
77956276773
-
Computational analysis of missense mutations causing Snyder-Robinson syndrome
-
Zhang Z, Teng S, Wang L, Schwartz CE, Alexov E, (2010) Computational analysis of missense mutations causing Snyder-Robinson syndrome. Hum Mutat 31: 1043-1049.
-
(2010)
Hum Mutat
, vol.31
, pp. 1043-1049
-
-
Zhang, Z.1
Teng, S.2
Wang, L.3
Schwartz, C.E.4
Alexov, E.5
-
10
-
-
79957582046
-
In silico and in vitro investigations of the mutability of disease-causing missense mutation sites in spermine synthase
-
Zhang Z, Norris J, Schwartz C, Alexov E, (2011) In silico and in vitro investigations of the mutability of disease-causing missense mutation sites in spermine synthase. PLoS One 6: e20373.
-
(2011)
PLoS One
, vol.6
-
-
Zhang, Z.1
Norris, J.2
Schwartz, C.3
Alexov, E.4
-
11
-
-
79956221510
-
On the role of electrostatics in protein-protein interactions
-
Zhang Z, Witham S, Alexov E, (2011) On the role of electrostatics in protein-protein interactions. Phys Biol 8: 035001.
-
(2011)
Phys Biol
, vol.8
, pp. 035001
-
-
Zhang, Z.1
Witham, S.2
Alexov, E.3
-
12
-
-
84861052952
-
Analyzing effects of naturally occurring missense mutations
-
Zhang Z, Miteva MA, Wang L, Alexov E, (2012) Analyzing effects of naturally occurring missense mutations. Comput Math Methods Med 2012: 805827.
-
(2012)
Comput Math Methods Med
, vol.2012
, pp. 805827
-
-
Zhang, Z.1
Miteva, M.A.2
Wang, L.3
Alexov, E.4
-
13
-
-
32944472945
-
Aminopropyltransferases: function, structure and genetics
-
Ikeguchi Y, Bewley MC, Pegg AE, (2006) Aminopropyltransferases: function, structure and genetics. Journal of biochemistry 139: 1-9.
-
(2006)
Journal of Biochemistry
, vol.139
, pp. 1-9
-
-
Ikeguchi, Y.1
Bewley, M.C.2
Pegg, A.E.3
-
14
-
-
0022522022
-
Thermotoga-Maritima Sp-Nov Represents a New Genus of Unique Extremely Thermophilic Eubacteria Growing up to 90-Degrees-C
-
Huber R, Langworthy TA, Konig H, Thomm M, Woese CR, et al. (1986) Thermotoga-Maritima Sp-Nov Represents a New Genus of Unique Extremely Thermophilic Eubacteria Growing up to 90-Degrees-C. Arch Microbiol 144: 324-333.
-
(1986)
Arch Microbiol
, vol.144
, pp. 324-333
-
-
Huber, R.1
Langworthy, T.A.2
Konig, H.3
Thomm, M.4
Woese, C.R.5
-
15
-
-
34447554595
-
Structure and mechanism of spermidine synthases
-
Wu H, Min J, Ikeguchi Y, Zeng H, Dong A, et al. (2007) Structure and mechanism of spermidine synthases. Biochemistry 46: 8331-8339.
-
(2007)
Biochemistry
, vol.46
, pp. 8331-8339
-
-
Wu, H.1
Min, J.2
Ikeguchi, Y.3
Zeng, H.4
Dong, A.5
-
16
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
17
-
-
77953082029
-
Structural and functional implications of p53 missense cancer mutations
-
Tan Y, Luo R, (2009) Structural and functional implications of p53 missense cancer mutations. PMC Biophys 2: 5.
-
(2009)
PMC Biophys
, vol.2
, pp. 5
-
-
Tan, Y.1
Luo, R.2
-
18
-
-
48749103325
-
Targeted rescue of a destabilized mutant of p53 by an in silico screened drug
-
Boeckler FM, Joerger AC, Jaggi G, Rutherford TJ, Veprintsev DB, et al. (2008) Targeted rescue of a destabilized mutant of p53 by an in silico screened drug. Proc Natl Acad Sci U S A 105: 10360-10365.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 10360-10365
-
-
Boeckler, F.M.1
Joerger, A.C.2
Jaggi, G.3
Rutherford, T.J.4
Veprintsev, D.B.5
-
19
-
-
0042738950
-
Factor V New Brunswick: Ala221Val associated with FV deficiency reproduced in vitro and functionally characterized
-
Steen M, Miteva M, Villoutreix BO, Yamazaki T, Dahlback B, (2003) Factor V New Brunswick: Ala221Val associated with FV deficiency reproduced in vitro and functionally characterized. Blood 102: 1316-1322.
-
(2003)
Blood
, vol.102
, pp. 1316-1322
-
-
Steen, M.1
Miteva, M.2
Villoutreix, B.O.3
Yamazaki, T.4
Dahlback, B.5
-
20
-
-
79251568943
-
Structure-based analysis of five novel disease-causing mutations in 21-hydroxylase-deficient patients
-
Minutolo C, Nadra AD, Fernandez C, Taboas M, Buzzalino N, et al. (2011) Structure-based analysis of five novel disease-causing mutations in 21-hydroxylase-deficient patients. PLoS One 6: e15899.
-
(2011)
PLoS One
, vol.6
-
-
Minutolo, C.1
Nadra, A.D.2
Fernandez, C.3
Taboas, M.4
Buzzalino, N.5
-
21
-
-
0347319167
-
Theoretical and experimental study of the D2194G mutation in the C2 domain of coagulation factor V
-
Miteva MA, Brugge JM, Rosing J, Nicolaes GA, Villoutreix BO, (2004) Theoretical and experimental study of the D2194G mutation in the C2 domain of coagulation factor V. Biophys J 86: 488-498.
-
(2004)
Biophys J
, vol.86
, pp. 488-498
-
-
Miteva, M.A.1
Brugge, J.M.2
Rosing, J.3
Nicolaes, G.A.4
Villoutreix, B.O.5
-
22
-
-
84858025731
-
C-terminal mutations destabilize SIL1/BAP and can cause Marinesco-Sjogren syndrome
-
Howes J, Shimizu Y, Feige MJ, Hendershot LM, (2012) C-terminal mutations destabilize SIL1/BAP and can cause Marinesco-Sjogren syndrome. J Biol Chem 287: 8552-8560.
-
(2012)
J Biol Chem
, vol.287
, pp. 8552-8560
-
-
Howes, J.1
Shimizu, Y.2
Feige, M.J.3
Hendershot, L.M.4
-
23
-
-
79960091949
-
A missense mutation in CLIC2 associated with intellectual disability is predicted by in silico modeling to affect protein stability and dynamics
-
Witham S, Takano K, Schwartz C, Alexov E, (2011) A missense mutation in CLIC2 associated with intellectual disability is predicted by in silico modeling to affect protein stability and dynamics. Proteins 79: 2444-54.
-
(2011)
Proteins
, vol.79
, pp. 2444-2454
-
-
Witham, S.1
Takano, K.2
Schwartz, C.3
Alexov, E.4
-
24
-
-
84867115345
-
An X-linked channelopathy with cardiomegaly due to a CLIC2 mutation enhancing ryanodine receptor channel activity
-
Takano K, Liu D, Tarpey P, Gallant E, Lam A, et al. (2012) An X-linked channelopathy with cardiomegaly due to a CLIC2 mutation enhancing ryanodine receptor channel activity. Hum Mol Genet 21: 10.
-
(2012)
Hum Mol Genet
, vol.21
, pp. 10
-
-
Takano, K.1
Liu, D.2
Tarpey, P.3
Gallant, E.4
Lam, A.5
-
25
-
-
2342503204
-
Augmented intrinsic activity of Factor VIIa by replacement of residues 305, 314, 337 and 374: evidence of two unique mutational mechanisms of activity enhancement
-
Persson E, Bak H, Ostergaard A, Olsen OH, (2004) Augmented intrinsic activity of Factor VIIa by replacement of residues 305, 314, 337 and 374: evidence of two unique mutational mechanisms of activity enhancement. Biochem J 379: 497-503.
-
(2004)
Biochem J
, vol.379
, pp. 497-503
-
-
Persson, E.1
Bak, H.2
Ostergaard, A.3
Olsen, O.H.4
-
26
-
-
84858451153
-
Rational design to improve thermostability and specific activity of the truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase
-
Huang JW, Cheng YS, Ko TP, Lin CY, Lai HL, et al. (2012) Rational design to improve thermostability and specific activity of the truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase. Appl Microbiol Biotechnol 94: 111-121.
-
(2012)
Appl Microbiol Biotechnol
, vol.94
, pp. 111-121
-
-
Huang, J.W.1
Cheng, Y.S.2
Ko, T.P.3
Lin, C.Y.4
Lai, H.L.5
-
28
-
-
0035173378
-
dbSNP: the NCBI database of genetic variation
-
Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, et al. (2001) dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29: 308-311.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 308-311
-
-
Sherry, S.T.1
Ward, M.H.2
Kholodov, M.3
Baker, J.4
Phan, L.5
-
29
-
-
0033957472
-
dbSNP: a database of single nucleotide polymorphisms
-
Smigielski EM, Sirotkin K, Ward M, Sherry ST, (2000) dbSNP: a database of single nucleotide polymorphisms. Nucleic Acids Res 28: 352-355.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 352-355
-
-
Smigielski, E.M.1
Sirotkin, K.2
Ward, M.3
Sherry, S.T.4
-
30
-
-
0032876978
-
dbSNP-database for single nucleotide polymorphisms and other classes of minor genetic variation
-
Sherry ST, Ward M, Sirotkin K, (1999) dbSNP-database for single nucleotide polymorphisms and other classes of minor genetic variation. Genome Res 9: 677-679.
-
(1999)
Genome Res
, vol.9
, pp. 677-679
-
-
Sherry, S.T.1
Ward, M.2
Sirotkin, K.3
-
31
-
-
0035838974
-
Extending the accuracy limits of prediction for side-chain conformations
-
Xiang Z, Honig B, (2001) Extending the accuracy limits of prediction for side-chain conformations. J Mol Biol 311: 421-430.
-
(2001)
J Mol Biol
, vol.311
, pp. 421-430
-
-
Xiang, Z.1
Honig, B.2
-
32
-
-
34249857539
-
COBALT: constraint-based alignment tool for multiple protein sequences
-
Papadopoulos JS, Agarwala R, (2007) COBALT: constraint-based alignment tool for multiple protein sequences. Bioinformatics 23: 1073-1079.
-
(2007)
Bioinformatics
, vol.23
, pp. 1073-1079
-
-
Papadopoulos, J.S.1
Agarwala, R.2
-
33
-
-
84857745267
-
Database resources of the National Center for Biotechnology Information
-
Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, et al. (2012) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 40: D13-25.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bolton, E.4
Bryant, S.H.5
-
34
-
-
68949089840
-
On the electrostatic component of the binding free energy
-
Talley K, Ng K, Shroder M, Kundrotas P, Alexov E, (2008) On the electrostatic component of the binding free energy. PMC Biophysics 1: 2.
-
(2008)
PMC Biophysics
, vol.1
, pp. 2
-
-
Talley, K.1
Ng, K.2
Shroder, M.3
Kundrotas, P.4
Alexov, E.5
-
35
-
-
66149102833
-
Modeling effects of human single nucleotide polymorphisms on protein-protein interactions
-
Teng S, Madej T, Panchenko A, Alexov E, (2009) Modeling effects of human single nucleotide polymorphisms on protein-protein interactions. Biophys J 96: 2178-2188.
-
(2009)
Biophys J
, vol.96
, pp. 2178-2188
-
-
Teng, S.1
Madej, T.2
Panchenko, A.3
Alexov, E.4
-
36
-
-
0033614791
-
Calculated Protein and Proton Motions Coupled to Electron Transfer: Electron Transfer from QA- to QB in Bacterial Photosynthetic Reaction Centers
-
Alexov E, Gunner M, (1999) Calculated Protein and Proton Motions Coupled to Electron Transfer: Electron Transfer from QA- to QB in Bacterial Photosynthetic Reaction Centers. Biochemistry 38: 8253-8270.
-
(1999)
Biochemistry
, vol.38
, pp. 8253-8270
-
-
Alexov, E.1
Gunner, M.2
-
37
-
-
0036787760
-
Combining conformational flexibility and continuum electrostatics for calculating pK(a)s in proteins
-
Georgescu RE, Alexov EG, Gunner MR, (2002) Combining conformational flexibility and continuum electrostatics for calculating pK(a)s in proteins. Biophys J 83: 1731-1748.
-
(2002)
Biophys J
, vol.83
, pp. 1731-1748
-
-
Georgescu, R.E.1
Alexov, E.G.2
Gunner, M.R.3
-
38
-
-
62749167980
-
MCCE2: Improving Protein pKa Calculations with Extensive Side Chain Rotamer Sampling
-
Song Y, Mao J, Gunner MR, (2009) MCCE2: Improving Protein pKa Calculations with Extensive Side Chain Rotamer Sampling. Comp Chem 30: 2231-2247.
-
(2009)
Comp Chem
, vol.30
, pp. 2231-2247
-
-
Song, Y.1
Mao, J.2
Gunner, M.R.3
-
39
-
-
0027160197
-
Backbone-dependent rotamer library for proteins. Application to side-chain prediction
-
Dunbrack RL Jr, Karplus M, (1993) Backbone-dependent rotamer library for proteins. Application to side-chain prediction. J Mol Biol 230: 543-574.
-
(1993)
J Mol Biol
, vol.230
, pp. 543-574
-
-
Dunbrack Jr., R.L.1
Karplus, M.2
-
40
-
-
1842326139
-
Bayesian statistical analysis of protein side-chain rotamer preferences
-
Dunbrack RL Jr, Cohen FE, (1997) Bayesian statistical analysis of protein side-chain rotamer preferences. Protein Sci 6: 1661-1681.
-
(1997)
Protein Sci
, vol.6
, pp. 1661-1681
-
-
Dunbrack Jr., R.L.1
Cohen, F.E.2
-
41
-
-
0031576989
-
Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool
-
Bower MJ, Cohen FE, Dunbrack RL Jr, (1997) Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool. J Mol Biol 267: 1268-1282.
-
(1997)
J Mol Biol
, vol.267
, pp. 1268-1282
-
-
Bower, M.J.1
Cohen, F.E.2
Dunbrack Jr., R.L.3
-
42
-
-
0028429178
-
Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains
-
Dunbrack RL Jr, Karplus M, (1994) Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains. Nat Struct Biol 1: 334-340.
-
(1994)
Nat Struct Biol
, vol.1
, pp. 334-340
-
-
Dunbrack Jr., R.L.1
Karplus, M.2
-
43
-
-
33846011887
-
Statistical and conformational analysis of the electron density of protein side chains
-
Shapovalov MV, Dunbrack RL Jr, (2007) Statistical and conformational analysis of the electron density of protein side chains. Proteins 66: 279-303.
-
(2007)
Proteins
, vol.66
, pp. 279-303
-
-
Shapovalov, M.V.1
Dunbrack Jr., R.L.2
-
44
-
-
56349095598
-
SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling
-
Wang Q, Canutescu AA, Dunbrack RL Jr, (2008) SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling. Nat Protoc 3: 1832-1847.
-
(2008)
Nat Protoc
, vol.3
, pp. 1832-1847
-
-
Wang, Q.1
Canutescu, A.A.2
Dunbrack Jr., R.L.3
-
45
-
-
70450106216
-
Improved prediction of protein side-chain conformations with SCWRL4
-
Krivov GG, Shapovalov MV, Dunbrack RL Jr, (2009) Improved prediction of protein side-chain conformations with SCWRL4. Proteins 77: 778-795.
-
(2009)
Proteins
, vol.77
, pp. 778-795
-
-
Krivov, G.G.1
Shapovalov, M.V.2
Dunbrack Jr., R.L.3
-
46
-
-
0042511005
-
A graph-theory algorithm for rapid protein side-chain prediction
-
Canutescu AA, Shelenkov AA, Dunbrack RL Jr, (2003) A graph-theory algorithm for rapid protein side-chain prediction. Protein Sci 12: 2001-2014.
-
(2003)
Protein Sci
, vol.12
, pp. 2001-2014
-
-
Canutescu, A.A.1
Shelenkov, A.A.2
Dunbrack Jr., R.L.3
-
47
-
-
83555178443
-
SIDEpro: a novel machine learning approach for the fast and accurate prediction of side-chain conformations
-
Nagata K, Randall A, Baldi P, (2012) SIDEpro: a novel machine learning approach for the fast and accurate prediction of side-chain conformations. Proteins 80: 142-153.
-
(2012)
Proteins
, vol.80
, pp. 142-153
-
-
Nagata, K.1
Randall, A.2
Baldi, P.3
-
49
-
-
23444454552
-
The Amber biomolecular simulation programs
-
Case DA, Cheatham TE 3rd, Darden T, Gohlke H, Luo R, et al. (2005) The Amber biomolecular simulation programs. J Comput Chem 26: 1668-1688.
-
(2005)
J Comput Chem
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham 3rd, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
-
50
-
-
67650500988
-
CHARMM: the biomolecular simulation program
-
Brooks BR, Brooks CL 3rd, Mackerell AD Jr, Nilsson L, Petrella RJ, et al. (2009) CHARMM: the biomolecular simulation program. J Comput Chem 30: 1545-1614.
-
(2009)
J Comput Chem
, vol.30
, pp. 1545-1614
-
-
Brooks, B.R.1
Brooks 3rd, C.L.2
Mackerell Jr., A.D.3
Nilsson, L.4
Petrella, R.J.5
-
51
-
-
33645941402
-
The Opls Potential Functions for Proteins - Energy Minimizations for Crystals of Cyclic-Peptides and Crambin
-
Jorgensen WL, Tiradorives J, (1988) The Opls Potential Functions for Proteins- Energy Minimizations for Crystals of Cyclic-Peptides and Crambin. Journal of the American Chemical Society 110: 1657-1666.
-
(1988)
Journal of the American Chemical Society
, vol.110
, pp. 1657-1666
-
-
Jorgensen, W.L.1
Tiradorives, J.2
-
52
-
-
0344778061
-
Semianalytical Treatment of Solvation for Molecular Mechanics and Dynamics
-
Still WC, Tempczyk A, Hawley RC, Hendrickson T, (1990) Semianalytical Treatment of Solvation for Molecular Mechanics and Dynamics. Journal of the American Chemical Society 112: 6127-6129.
-
(1990)
Journal of the American Chemical Society
, vol.112
, pp. 6127-6129
-
-
Still, W.C.1
Tempczyk, A.2
Hawley, R.C.3
Hendrickson, T.4
-
53
-
-
84863241652
-
Predicting folding free energy changes upon single point mutations
-
Zhang Z, Wang L, Gao Y, Zhang J, Zhenirovskyy M, et al. (2012) Predicting folding free energy changes upon single point mutations. Bioinformatics 28: 664-671.
-
(2012)
Bioinformatics
, vol.28
, pp. 664-671
-
-
Zhang, Z.1
Wang, L.2
Gao, Y.3
Zhang, J.4
Zhenirovskyy, M.5
-
54
-
-
33746639718
-
Emergence of protein fold families through rational design
-
Ding F, Dokholyan NV, (2006) Emergence of protein fold families through rational design. Plos Computational Biology 2: 725-733.
-
(2006)
Plos Computational Biology
, vol.2
, pp. 725-733
-
-
Ding, F.1
Dokholyan, N.V.2
-
55
-
-
34249777526
-
Eris: an automated estimator of protein stability
-
Yin S, Ding F, Dokholyan NV, (2007) Eris: an automated estimator of protein stability. Nat Methods 4: 466-467.
-
(2007)
Nat Methods
, vol.4
, pp. 466-467
-
-
Yin, S.1
Ding, F.2
Dokholyan, N.V.3
-
56
-
-
36749018607
-
Modeling backbone flexibility improves protein stability estimation
-
Yin S, Ding F, Dokholyan NV, (2007) Modeling backbone flexibility improves protein stability estimation. Structure 15: 1567-1576.
-
(2007)
Structure
, vol.15
, pp. 1567-1576
-
-
Yin, S.1
Ding, F.2
Dokholyan, N.V.3
-
57
-
-
84871742701
-
DelPhi: a comprehensive suite for DelPhi software and associated resources
-
Li L, Li C, Sarkar S, Zhang J, Witham S, et al. (2012) DelPhi: a comprehensive suite for DelPhi software and associated resources. BMC Biophys 5: 9.
-
(2012)
BMC Biophys
, vol.5
, pp. 9
-
-
Li, L.1
Li, C.2
Sarkar, S.3
Zhang, J.4
Witham, S.5
-
59
-
-
0025066772
-
Normal mode analysis of human lysozyme: study of the relative motion of the two domains and characterization of the harmonic motion
-
Gibrat JF, Go N, (1990) Normal mode analysis of human lysozyme: study of the relative motion of the two domains and characterization of the harmonic motion. Proteins 8: 258-279.
-
(1990)
Proteins
, vol.8
, pp. 258-279
-
-
Gibrat, J.F.1
Go, N.2
-
60
-
-
0022111715
-
Normal modes for specific motions of macromolecules: application to the hinge-bending mode of lysozyme
-
Brooks B, Karplus M, (1985) Normal modes for specific motions of macromolecules: application to the hinge-bending mode of lysozyme. Proc Natl Acad Sci U S A 82: 4995-4999.
-
(1985)
Proc Natl Acad Sci U S A
, vol.82
, pp. 4995-4999
-
-
Brooks, B.1
Karplus, M.2
-
61
-
-
0035132230
-
Anisotropy of fluctuation dynamics of proteins with an elastic network model
-
Atilgan AR, Durell SR, Jernigan RL, Demirel MC, Keskin O, et al. (2001) Anisotropy of fluctuation dynamics of proteins with an elastic network model. Biophys J 80: 505-515.
-
(2001)
Biophys J
, vol.80
, pp. 505-515
-
-
Atilgan, A.R.1
Durell, S.R.2
Jernigan, R.L.3
Demirel, M.C.4
Keskin, O.5
-
62
-
-
33750407288
-
Anisotropic network model: systematic evaluation and a new web interface
-
Eyal E, Yang LW, Bahar I, (2006) Anisotropic network model: systematic evaluation and a new web interface. Bioinformatics 22: 2619-2627.
-
(2006)
Bioinformatics
, vol.22
, pp. 2619-2627
-
-
Eyal, E.1
Yang, L.W.2
Bahar, I.3
-
63
-
-
0042569018
-
Effect of spermine synthase on the sensitivity of cells to anti-tumour agents
-
Ikeguchi Y, Mackintosh CA, McCloskey DE, Pegg AE, (2003) Effect of spermine synthase on the sensitivity of cells to anti-tumour agents. Biochem J 373: 885-892.
-
(2003)
Biochem J
, vol.373
, pp. 885-892
-
-
Ikeguchi, Y.1
Mackintosh, C.A.2
McCloskey, D.E.3
Pegg, A.E.4
-
64
-
-
0031600263
-
Assay of spermidine and spermine synthases
-
Wiest L, Pegg AE, (1998) Assay of spermidine and spermine synthases. Methods Mol Biol 79: 51-57.
-
(1998)
Methods Mol Biol
, vol.79
, pp. 51-57
-
-
Wiest, L.1
Pegg, A.E.2
|