Biomarker imaging of single diatom cells in a microbial mat using time-of-flight secondary ion mass spectrometry (ToF-SIMS)

Organic Geochemistry

Volumn 57, Issue , 2013, Pages 23-33

  Leefmann, Tim ^a   Heim, Christine ^a   Kryvenda, Anastasiia ^b   Siljeström, Sandra ^c   Sjövall, Peter ^c   Thiel, Volker ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b UNIVERSITY OF GÖTTINGEN   (Germany)

^c SP TECHNICAL RESEARCH INSTITUTE OF SWEDEN   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

BIOGEOCHEMICAL; CLEAR CUTS; ION IMAGES; LIPID BIOMARKERS; LIPID SOURCES; MICROSCOPIC LEVELS; MORPHOLOGICAL STRUCTURES; PHYSICAL INTEGRITY; TIME OF FLIGHT SECONDARY ION MASS SPECTROMETRY; TOF SIMS; TRIACYLGLYCEROLS;

BIOMARKERS; CHLOROPHYLL; EXTRACTION; GAS CHROMATOGRAPHY; GLYCEROL; MICROORGANISMS; OPTICAL MICROSCOPY;

SECONDARY ION MASS SPECTROMETRY;

BIOMARKER; DIATOM; MASS SPECTROMETRY; MICROBIAL MAT; MICROSCOPY; MORPHOLOGY;

BACILLARIOPHYTA; PLANOTHIDIUM LANCEOLATUM;

EID: 84874548464     PISSN: 01466380     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.orggeochem.2013.01.005     Document Type: Article

References (56)

1. Akimoto N., Maoka T., Fujiwara Y., Hashimoto K. Analysis of carotenoids by FAB CID-MS/MS. Journal of the Mass Spectrometry Society of Japan 2000, 48:32-41.
2. Battarbee R.W. Diatom analysis. Handbook of Holocene Paleoecology and Paleohydrology 1986, 527-570. John Wiley & Sons, London, UK. B.E. Berglund (Ed.).
3. Belu A.M., Graham D.J., Castner D.G. Time-of-flight secondary ion mass spectrometry: techniques and applications for the characterization of biomaterial surfaces. Biomaterials 2003, 24:3635-3653.
4. Benninghoven A. Chemical analysis of inorganic and organic surfaces and thin films by static time-of-flight secondary ion mass spectrometry (TOF-SIMS). Angewandte Chemie International Edition 1994, 33:1023-1043.
5. Brunelle A., Laprévote O. Lipid imaging with cluster time-of-flight secondary ion mass spectrometry. Analytical and Bioanalytical Chemistry 2009, 393:31-35.
6. Colliver T.L., Brummel C.L., Pacholski M.L., Swanek F.D., Ewing A.G., Winograd N. Atomic and molecular imaging at the single-cell level with TOF-SIMS. Analytical Chemistry 1997, 69:2225-2231.
7. de Brouwer J.F.C., Cooksey K.E., Wigglesworth-Cooksey B., Staal M.J., Stal L.J., Avci R. Time of flight-secondary ion mass spectrometry on isolated extracellular fractions and intact biofilms of three species of benthic diatoms. Journal of Microbiological Methods 2006, 65:562-572.
8. Debois D., Bralet M.-P., Le Naour F., Brunelle A., Laprévote O. In situ lipidomic analysis of nonalcoholic fatty liver by cluster TOF-SIMS imaging. Analytical Chemistry 2009, 81:2823-2831.
9. Fletcher J.S., Vickerman J.C. Secondary ion mass spectrometry: characterizing complex samples in two and three dimensions. Analytical Chemistry 2013, 85:610-639.
10. Guidry S.A., Chafetz H.S. Depositional facies and diagenetic alteration in a relict siliceous hot-spring accumulation: Examples from Yellowstone National Park, U.S.A. Journal of Sedimentary Research 2003, 73:806-823.
11. Heim C., Sjövall P., Lausmaa J., Leefmann T., Thiel V. Spectral characterisation of eight glycerolipids and their detection in natural samples using time-of-flight secondary ion mass spectrometry. Rapid Communications in Mass Spectrometry 2009, 23:2741-2753.
12. Heim C., Lausmaa J., Sjövall P., Toporski J., Dieing T., Simon K., et al. Ancient microbial activity recorded in fracture fillings from granitic rocks (Äspö Hard Rock Laboratory, Sweden). Geobiology 2012, 10:280-297.
13. Hildebrand M., Davis A.K., Smith S.R., Traller J.C., Abbriano R. The place of diatoms in the biofuels industry. Biofuels 2012, 3:221-240.
14. Hu Q., Sommerfeld M., Jarvis E., Ghirardi M., Posewitz M., Seibert M., et al. Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances. The Plant Journal 2008, 54:621-639.
15. Hunt J.E., Macfarlane R.D., Katz J.J., Dougherty R.C. High-energy fragmentation of chlorophyll a and its fully deuterated analog by californium-252 plasma desorption mass spectrometry. Journal of the American Chemical Society 1981, 103:6775-6778.
16. Jetter R., Sodhi R. Chemical composition and microstructure of waxy plant surfaces: triterpenoids and fatty acid derivatives on leaves of Kalanchoe daigremontiana. Surface and Interface Analysis 2011, 43:326-330.
17. Keely B.J. Geochemistry of chlorophylls. Chlorophylls and Bacteriochlorophylls 2006, 535-561. Springer, Netherlands. B. Grimm, R. Porra, W. Rüdiger, H. Scheer (Eds.).
18. Krammer, K., Lange-Bertalot, H., 1991. Achnanthaceae, kritische Ergänzungen zu Navicula (Lineolatae) und Gomphonema. Gesamtliteraturverzeichnis Teil 1-4. In: Ettl, H., Gärtner, G., Gerloff, J., Heynig, H., Mollenhauer, D. (Eds.), Süsswasserflora von Mitteleuropa. Band 2, Bacillariophyceae. 4. Teil. Gustav Fischer Verlag, Stuttgart, Germany.
19. Kurczy M.E., Piehowski P.D., Van Bell C.T., Heien M.L., Winograd N., Ewing A.G. Mass spectrometry imaging of mating Tetrahymena show that changes in cell morphology regulate lipid domain formation. Proceedings of the National Academy of Sciences USA 2010, 107:2751-2756.
20. Lange-Bertalot, H., 1999. Neue kombinationen von taxa aus Achnanthes Bory (sensu lato). In: Lange-Bertalot, H. (Ed.), Iconographia Diatomologica. Annotated Diatom Micrographs. Koeltz Scientific Books, Königstein, pp. 276-289.
21. Leefmann T., Heim C., Siljeström S., Blumenberg M., Sjövall P., Thiel V. Spectral characterization of ten cyclic lipids using time-of-flight secondary ion mass spectrometry. Rapid Communications in Mass Spectrometry 2013, 27:565-581.
22. Levine J., Billeter J.C., Krull U., Sodhi R. The cuticular surface of D. melanogaster: ToF-SIMS on the fly. Surface and Interface Analysis 2011, 43:317-321.
23. Lindgren J., Uvdal P., Sjövall P., Nilsson D.E., Engdahl A., Schultz B.P., et al. Molecular preservation of the pigment melanin in fossil melanosomes. Nature Communications 2012, 3:824.
24. Malmberg P., Nygren H., Richter K., Chen Y., Dangardt F., Friberg P., et al. Imaging of lipids in human adipose tissue by cluster ion TOF-SIMS. Microscopy Research and Technique 2007, 70:828-835.
25. Mínguez-Mosquera M.I., Gandul-Rojas B. High-performance liquid chromatographic study of alkaline treatment of chlorophyll. Journal of Chromatography A 1995, 690:161-176.
26. Nygren H., Malmberg P., Kriegeskotte C., Arlinghaus H.F. Bioimaging TOF-SIMS: localization of cholesterol in rat kidney sections. FEBS Letters 2004, 566:291-293.
27. Ostrowski S.G., Bell C.T.V., Winograd N., Ewing A.G. Mass spectrometric imaging of highly curved membranes during Tetrahymena mating. Science 2004, 305:71-73.
28. Ostrowski S.G., Szakal C., Kozole J., Roddy T.P., Xu J., Ewing A.G., et al. Secondary ion ms imaging of lipids in picoliter vials with a buckminsterfullerene ion source. Analytical Chemistry 2005, 77:6190-6196.
29. Passarelli M.K., Winograd N. Lipid imaging with time-of-flight secondary ion mass spectrometry (ToF-SIMS). Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids 2011, 1811:976-990.
30. Pelizzi N., Catinella S., Barboso S., Zanol M. Different electrospray tandem mass spectrometric approaches for rapid characterization of phospholipid classes of Curosurf®, a natural pulmonary surfactant. Rapid Communications in Mass Spectrometry 2002, 16:2215-2220.
31. Perkins M., Roberts C., Briggs D., Davies M., Friedmann A., Hart C., et al. Surface morphology and chemistry of Prunus laurocerasus L. leaves: a study using X-ray photoelectron spectroscopy, time-of-flight secondary-ion mass spectrometry, atomic-force microscopy and scanning-electron microscopy. Planta 2005, 221:123-134.
32. Piehowski P.D., Carado A.J., Kurczy M.E., Ostrowski S.G., Heien M.L., Winograd N., et al. MS/MS methodology to improve subcellular mapping of cholesterol using TOF-SIMS. Analytical Chemistry 2008, 80:8662-8667.
33. Schaber P.M., Hunt J.E., Fries R., Katz J.J. High-performance liquid chromatographic study of the chlorophyll allomerization reaction. Journal of Chromatography A 1984, 316:25-41.
34. Seyer A., Einhorn J., Brunelle A., Laprévote O. Localization of flavonoids in seeds by cluster time-of-flight secondary ion mass spectrometry imaging. Analytical Chemistry 2010, 82:2326-2333.
35. Sheehan, J., Dunahay, T., Benemann, J., Roessler, P., 1998. A Look Back at the U.S. Department of Energy's Aquatic Species Program: Biodiesel from Algae. National Renewable Energy Laboratory, Golden, USA.
36. Siljeström S., Hode T., Lausmaa J., Sjövall P., Toporski J., Thiel V. Detection of organic biomarkers in crude oils using ToF-SIMS. Organic Geochemistry 2009, 40:135-143.
37. Siljeström S., Lausmaa J., Sjövall P., Broman C., Thiel V., Hode T. Analysis of hopanes and steranes in single oil-bearing fluid inclusions using time-of-flight secondary ion mass spectrometry (ToF-SIMS). Geobiology 2010, 8:37-44.
38. Sjövall P., Lausmaa J., Johansson B. Mass spectrometric imaging of lipids in brain tissue. Analytical Chemistry 2004, 76:4271-4278.
39. Sjövall P., Johansson B., Belazi D., Stenvinkel P., Lindholm B., Lausmaa J., et al. TOF-SIMS analysis of adipose tissue from patients with chronic kidney disease. Applied Surface Science 2008, 255:1177-1180.
40. Sodhi R.N.S. Time-of-flight secondary ion mass spectrometry (TOF-SIMS): versatility in chemical and imaging surface analysis. Analyst 2004, 129:483-487.
41. Steele A., Toporski J.K.W., Avci R., Guidry S., McKay D.S. Time of flight secondary ion mass spectrometry (ToFSIMS) of a number of hopanoids. Organic Geochemistry 2001, 32:905-911.
42. Thiel V., Sjövall P. Using time-of-flight secondary ion mass spectrometry to study biomarkers. Annual Review of Earth and Planetary Sciences 2011, 39:125-156.
43. Thiel V., Heim C., Arp G., Hahmann U., Sjövall P., Lausmaa J. Biomarkers at the microscopic range: ToF-SIMS molecular imaging of Archaea-derived lipids in a microbial mat. Geobiology 2007, 5:413-421.
44. Toporski J., Steele A. Characterization of purified biomarker compounds using time of flight-secondary ion mass spectrometry (ToF-SIMS). Organic Geochemistry 2004, 35:793-811.
45. Toporski J.K.W., Steele A., Westall F., Avci R., Martill D.M., McKay D.S. Morphologic and spectral investigation of exceptionally well-preserved bacterial biofilms from the Oligocene Enspel formation, Germany. Geochimica et Cosmochimica Acta 2002, 66:1773-1791.
46. Touboul D., Brunelle A., Halgand F., De La Porte S., Laprevote O. Lipid imaging by gold cluster time-of-flight secondary ion mass spectrometry: application to Duchenne muscular dystrophy. Journal of Lipid Research 2005, 46:1388-1395.
47. Touboul D., Brunelle A., Laprévote O. Mass spectrometry imaging: towards a lipid microscope?. Biochimie 2011, 93:113-119.
48. Tyler B.J., Rangaranjan S., Möller J., Beumer A., Arlinghaus H.F. TOF-SIMS imaging of chlorhexidine-digluconate transport in frozen hydrated biofilms of the fungus Candida albicans. Applied Surface Science 2006, 252:6712-6715.
49. van Breemen R.B., Canjura F.L., Schwartz S.J. Identification of chlorophyll derivatives by mass spectrometry. Journal of Agricultural and Food Chemistry 1991, 39:1452-1456.
50. Vickerman J., Briggs D. ToF-SIMS, Surface Analysis by Mass Spectrometry 2001, IM Publications, Chichester, UK.
51. Vieler A., Wilhelm C., Goss R., Süß R., Schiller J. The lipid composition of the unicellular green alga Chlamydomonas reinhardtii and the diatom Cyclotella meneghiniana investigated by MALDI-TOF MS and TLC. Chemistry and Physics of Lipids 2007, 150:143-155.
52. Volkman J.K., Jeffrey S.W., Nichols P.D., Rogers G.I., Garland C.D. Fatty acid and lipid composition of 10 species of microalgae used in mariculture. Journal of Experimental Marine Biology and Ecology 1989, 128:219-240.
53. Walker J.S., Jie C., Keely B.J. Identification of diastereomeric chlorophyll allomers by atmospheric pressure chemical ionisation liquid chromatography/tandem mass spectrometry. Rapid Communications in Mass Spectrometry 2003, 17:1125-1131.
54. Winograd N., Garrison B.J. Biological cluster mass spectrometry. Annual Review of Physical Chemistry 2010, 61:305-322.
55. Woolley P.S., Moir A.J., Hester R.E., Keely B.J. A comparative study of the allomerization reaction of chlorophyll a and bacteriochlorophyll a. Journal of the Chemical Society, Perkin Transactions 1998, 2:1833-1840.
56. Yu E., Zendejas F., Lane P., Gaucher S., Simmons B., Lane T. Triacylglycerol accumulation and profiling in the model diatoms Thalassiosira pseudonana and Phaeodactylum tricornutum (Baccilariophyceae) during starvation. Journal of Applied Phycology 2009, 21:669-681.