Rapid, quantitative, reverse transcription PCR in a polymer microfluidicchip

Biosensors and Bioelectronics

Volumn 44, Issue 1, 2013, Pages 222-228

  Curtis Saunders, D ^a   Holst, Gregory L ^a   Phaneuf, Christopher R ^a   Pak, Nikita ^a   Marchese, Matthew ^a   Sondej, Nicholas ^a   McKinnon, Michael ^a   Forest, Craig R ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Gene expression; Heat transfer; Microfluidics; Quantitative PCR; Radiative heating; Stem cells

Indexed keywords

BIO-MANUFACTURING; CONCURRENT FLUORESCENCE; COST BENEFITS; CYCLE THRESHOLDS; ENVIRONMENTAL CONTROL; GENE EXPRESSION PATTERNS; HIGH-THROUGHPUT; HOUSEKEEPING GENE; ITS APPLICATIONS; MELTING CURVES; MOUSE EMBRYONIC STEM CELLS; OPEN-LOOP; POLYMER MICROCHIPS; POLYMER MICROFLUIDIC CHIPS; Q-RT-PCR; QUANTITATIVE PCR; RADIATIVE HEATING; RAPID ANALYSIS; REACTION VOLUME; REAL-TIME OBSERVATION; REVERSE TRANSCRIPTION; REVERSE TRANSCRIPTION PCR; SERIAL DILUTIONS; STANDARD CURVES;

COST BENEFIT ANALYSIS; ENVIRONMENTAL MANAGEMENT; GENE EXPRESSION; HEAT TRANSFER; HEATING; MICROFLUIDICS; POLYMERS; RNA; STEM CELLS; TRANSCRIPTION;

POLYMERASE CHAIN REACTION;

BACTERIOPHAGE DNA; POLYMER;

ACCURACY; ARTICLE; DILUTION; FLUORESCENCE IMAGING; GAPDH GENE; GENE AMPLIFICATION; GENE EXPRESSION; HOUSEKEEPING GENE; LASER; MICROFLUIDICS; QUANTITATIVE REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; REPRODUCIBILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; TEMPERATURE;

ANIMALS; BACTERIOPHAGE LAMBDA; DNA, VIRAL; EQUIPMENT DESIGN; GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING); MICE; MICROFLUIDIC ANALYTICAL TECHNIQUES; REAL-TIME POLYMERASE CHAIN REACTION; REPRODUCIBILITY OF RESULTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA; SENSITIVITY AND SPECIFICITY; TIME FACTORS;

EID: 84874510612     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2013.01.019     Document Type: Article

References (53)

1. Anon., Nature Biotechnology 24 (9), 2006, 1039. http://www.nature.com/nbt/journal/v24/n9/full/nbt0906-1039.html.
2. Angione S., Chauhan A., Tripathi A. Analytical Chemistry 2012, 84(6):2654-2661.
3. Bao G., Rhee W.J., Tsourkas A. Annual Review of Biomedical Engineering 2009, 11:25-47.
4. Becker H., Gärtner C. Analytical and Bioanalytical Chemistry 2008, 390(1):89-111.
5. Boyer L.A., Lee T.I., Cole M.F., Johnstone S.E., Levine S.S., Zucker J.P., Guenther M.G., Kumar R.M., Murray H.L., Jenner R.G., Gifford D.K., Melton D.A., Jaenisch R., Young R.A. Cell 2005, 122(6):947-956.
6. Cao Q., Mahalanabis M., Chang J., Carey B., Hsieh C., Stanley A., Odell C.A., Mitchell P., Feldman J., Pollock N.R., Klapperich C.M. PLOS ONE 2012, 7(3):e33176.
7. Dahl A., Sultan M., Jung A., Schwartz R., Lange M., Steinwand M., Livak K., Lehrach H., Nyarsik L. Biomedical Microdevices 2007, 9(3):307-314.
8. Easley C.J., Karlinsey J.M., Bienvenue J.M., Legendre L.A., Roper M.G., Feldman S.H., Landers J.P. Proceedings of the National Academy of Sciences of the United States of America 2006, 103(51):19272-19277.
9. El-Ali J., Perch-Nielsen I.R., Poulsen C.R., Bang D.D., Telleman P., Wolff A. Sensors and Actuators A: Physical 2004, 110(1, Äì 3):3-10.
10. Erlich H.A., Gelfand D., Sninsky J.J. Science 1991, 252(5013):1643-1651.
11. Hua Z., Rouse J.L., Eckhardt A.E., Srinivasan V., Pamula V.K., Schell W.A., Benton J.L., Mitchell T.G., Pollack M.G. Analytical Chemistry 2010, 82(6):2310-2316.
12. Huhmer A.F.R., Landers J.P. Analytical Chemistry 2000, 72(21):5507-5512.
13. Itzkovitz S., van Oudenaarden A. Nature Methods 2011, 8(Suppl. 4s):512-519.
14. Kaigala G.V., Hoang V.N., Stickel A., Lauzon J., Manage D., Pilarski L.M., Backhouse C.J Analyst 2008, 133(3):331-338.
15. Kim H., Vishniakou S., Faris G.W. Lab on a Chip 2009, 9(9):1230-1235.
16. Lee D., Chen P., Lee G. Biosensors and Bioelectronics 2010, 25:1820-1824.
17. Legendre L.A., Bienvenue J.M., Roper M.G., Ferrance J.P., Landers J.P. Analytical Chemistry 2006, 78(5):1444-1451.
18. Liang P. Nature Biotechnology 2007, 25(1):27-28.
19. Lien K.-Y., Lee W.-C., Lei H.-Y., Lee G.-B. Biosensors and Bioelectronics 2007, 22(8):1739-1748.
20. Liu P., Seo T.S., Beyor N., Shin K.-J., Scherer J.R., Mathies R.A. Analytical Chemistry 2007, 79(5):1881-1889.
21. Lopez-Maury L., Marguerat S., Bahler J. Nature Reviews Genetics 2008, 9(8):583-593.
22. Malone J.H., Oliver B. BMC Biology 2011, 9(34):1-9.
23. Montgomery J., Wittwer C.T., Palais R., Zhou L. Nature Protocol 2007, 2(1):59-66.
24. Nair, R., Ngangan, A.V., Kemp, M.L., McDevitt, T.C., 2012. 7 (10), 2012, e42580.
25. Neuzil P., Zhang C., Pipper J., Oh S. and Zhuo L., Nucleic Acids Research 34 (11), 2006, e77. http://nar.oxfordjournals.org/content/34/11/e77.
26. Oosterbroek, R.E., Berg, A., 2003. Elsevier.
27. Pak N., Saunders D.C., Phaneuf C.R., Forest C.R. Biomedical Microdevices 2012, 14:427-433.
28. Phaneuf C., Oh K., Pak N., Saunders D., Conrardy C., Landers J., Tong S., Forest C. Biomedical Microdevices 2012, 1-11.
29. Phaneuf C.R., Pak N., Forest C.R. Sensors and Actuators A: Physical 2011, 167(2):531-536.
30. Reed G.H., Wittwer C.T. Clinical Chemistry 2004, 50(10):1748-1754.
31. Ririe K.M., Rasmussen R.P., Wittwer C.T. Analytical Biochemistry 1997, 245(2):154-160.
32. Sanchez-Freire V., Ebert A., Kalisky T., Quake S., Wu J. Nature Protocols 2012, 7(5):829-838.
33. Santangelo P., Lifland A., Curt P., Sasaki Y., Bassell G., Lindquist M., Crowe J. Nature Methods 2009, 6(5):347-349.
34. Santangelo P., Nix B., Tsourkas A., Bao G. Nucleic Acids Research 2004, 32(6):e57.
35. Schefe J., Lehmann K., Buschmann I., Unger T., Funke-Kaiser H. Journal of Molecular Medicine 2006, 84(11):901-910.
36. Schena M., Shalon D., Davis R.W., Brown P.O. Science 1995, 270:467-470.
37. Sperger J.M., Chen X., Draper J.S., Antosiewicz J.E., Chon C.H., Jones S.B., Brooks J.D., Andrews P.W., Brown P.O., Thomson J.A. Proceedings of the National Academy of Sciences of the United States of America 2003, 100(23):13350-13355.
38. Spurgeon S.L., Jones R.C., Ramakrishnan R. PLOS ONE 2008, 3(2):e1662.
39. Stahlberg A., Bengtsson M. Methods 2010, 50:282-288.
40. Tichopad A., Dilger M., Schwarz G. and Pfaffl M.W., Nucleic Acids Research 31 (20), 2003, e122. http://www.ncbi.nlm.nih.gov/pmc/articles/pmc219490.
41. van Pelt-Verkuil, E., van Belkum, A., Hays, J.P., 2008. Springer.
42. Warren L., Bryder D., Weissman I.L., Quake S.R. Proceedings of the National Academy of Sciences of the United States of America 2006, 103(47):17807-17812.
43. White A.V., Petriv M., Hamidi O., Sikorski M., Marra D., Piret M., Aparicio J., Hansen, C.S. Proceedings of the National Academy of Sciences of the United States of America 2011, 108(34):13999-14004.
44. Wittwer C.T., Ririe K.M., Andrew R.V., David D.A., Gundry R.A., Balis U.J. BioTechniques 1997, 22(1):176-181.
45. Wooley A.T., Hadley D., Landre P., de Mello A.J., Mathies R.A., Northrup M.A. Analytical Chemistry 1996, 68(23):4081-4086.
46. Yosef N. and Regev A., Cell 144 (6), 2011, 886-896. http://www.cell.com/abstract/S0092-8674(11)00129-2.
47. Yu Y., Li B., Baker C.A., Zhang X., Roper M.G. Analytical Chemistry 2012, 84(6):2825-2829.
48. Zare R., Kim S. Annual Review of Biomedical Engineering 2010, 12:187-201.
49. Zeng Y., Novak R., Shuga J., Smith M., Mathies R. Analytical Chemistry 2010, 82(8):3183-3190.
50. Zhang C., Xing D. Nucleic Acids Research 2007, 35(13):4223-4237.
51. Zhang C., Xu J., Ma W., Zheng W. Biotechnology Advances 2006, 24(3):243-284.
52. Zhong J., Chen Y., Marcus J., Scherer A., Quake S., Taylor C., Weiner L. Lab on a Chip 2007, 8:68-74.
53. Zhong J., Feng Y., Taylor C. Current Medicinal Chemistry 2008, 15(28):2897-2900.