De novo transcriptomic resources for two sibling species of moths: Ostrinia nubilalis and O. scapulalis

BMC Research Notes

Volumn 6, Issue 1, 2013, Pages

  Gschloessl, Bernhard ^a   Beyne, Emmanuelle ^a,b   Audiot, Philippe ^a   Bourguet, Denis ^a   Streiff, Réjane ^a  

^a INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^b INSTITUTE OF HUMAN GENETICS   (France)

Author keywords

454 sequencing; Adzuki bean borer; European corn borer; Moth; NGS; Ostrinia nubilalis; Ostrinia scapulalis; Sibling species; Tanscriptome

Indexed keywords

LEPIDOPTERA; OSTRINIA; OSTRINIA NUBILALIS; OSTRINIA SCAPULALIS; VIGNA ANGULARIS;

MESSENGER RNA; TRANSCRIPTOME;

ANIMAL; ARTICLE; CLASSIFICATION; GENETIC VARIABILITY; GENETICS; MOTH; NUCLEOTIDE SEQUENCE; SPECIES DIFFERENCE;

ANIMALS; BASE SEQUENCE; GENETIC VARIATION; MOTHS; RNA, MESSENGER; SPECIES SPECIFICITY; TRANSCRIPTOME;

MLCS; MLOWN;

EID: 84874378334     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-6-73     Document Type: Article

References (51)

1. Taxonomy and distribution of the European corn borer and allied species: genus Ostrinia (lepidoptera: pyralidae). Mutuura A, Monroe E, Memoirs of the Entomological Society of America 1970 71 1 112
2. Reconsidering the taxomony of several Ostrinia species in the light of reproductive isolation: a tale for Ernst Mayr. Frolov AN, Bourguet D, Ponsard S, Biol J Linn Soc 2007 91 1 49 72 10.1111/j.1095-8312.2007.00779.x (Pubitemid 46642954)
3. Genetic structure of European and Mediterranean maize borer populations on several wild and cultivated host plants. Leniaud L, Audiot P, Bourguet D, Frérot B, Genestier G, Lee SF, Malausa T, Le Pallec A-H, Souqual M-C, Ponsard S, Entomol Exp Appl 2006 120 1 51 62 10.1111/j.1570-7458.2006.00427.x (Pubitemid 43882923)
4. Genetic structure and gene flow in french populations of two Ostrinia taxa: host races or sibling species? Malausa T, Dalecky A, Ponsard S, Audiot P, Streiff R, Chaval Y, Bourguet D, Mol Ecol 2007 16 20 4210 4222 10.1111/j.1365-294X.2007.03457.x 17822415 (Pubitemid 47511211)
5. Scanning the European corn borer (Ostrinia spp.) genome for adaptive divergence between host-affiliated sibling species. Midamegbe A, Vitalis R, Malausa T, Delava E, Cros-Arteil S, Streiff R, Mol Ecol 2011 20 7 1414 1430 10.1111/j.1365-294X.2011.05035.x 21375617
6. Assortative mating in sympatric host races of the European corn borer. Malausa T, Bethenod MT, Bontemps A, Bourguet D, Cornuet JM, Ponsard S, Science 2005 308 5719 258 260 10.1126/science.1107577 15821092 (Pubitemid 40558862)
7. Genetic isolation between two sympatric host plant races of the European corn borer, Ostrinia nubilalis Hübner. II: assortative mating and host-plant preferences for oviposition. Bethenod MT, Thomas Y, Rousset F, Frérot B, Pélozuelo L, Genestier G, Bourguet D, Heredity 2005 94 2 264 270 10.1038/sj.hdy.6800611 15562285 (Pubitemid 40198970)
8. Assortative mating between European corn borer pheromone races: beyond assortative meeting. Pélozuelo L, Meusnier S, Audiot P, Bourguet D, Ponsard S, PLoS One 2007 2 6 555 10.1371/journal.pone.0000555 17579726 (Pubitemid 351194004)
9. Sympatric host races of the European corn borer: adaptation to host plants and hybrid performance. Calcagno V, Thomas Y, Bourguet D, J Evol Biol 2007 20 5 1720 1729 10.1111/j.1420-9101.2007.01391.x 17714289 (Pubitemid 47262865)
10. Differences in oviposition behaviour of two sympatric sibling species of the genus Ostrinia. Malausa T, Pélissié B, Piveteau V, Pelissier C, Bourguet D, Ponsard S, Bull Entomol Res 2008 98 2 193 201 18257953 (Pubitemid 351346266)
11. Host-plant specialization in pheromone strains of the European corn borer Ostrinia nubilalis in France. Pélozuelo L, Malosse C, Genestier G, Guenego H, Frérot B, J Chem Ecol 2004 30 2 335 352 15112728 (Pubitemid 38419019)
12. Insect sex pheromones: minor amount of opposite geometrical isomer critical to attraction. Klun JA, Chapman O, Mattes K, Wojtkowski P, Beroza M, Science 1973 181 661 663 10.1126/science.181.4100.661 17736980
13. Sex pheromone of the European corn borer, Ostrinia nubilalis (Lepidoptera: Pyralidae), in New York. Kochansky J, Cardé RT, Liebherr J, Roelofs WL, J Chem Ecol 1975 1 225 231 10.1007/BF00987871
14. European corn borer: pheromone polymorphism or sibling species? Cardé RT, Roelofs W, Harrison R, Vawter A, Brussard P, Science 1978 199 555 556 10.1126/science.199.4328.555 17750022
15. Female sex pheromone polymorphism in Adzuki bean borer, Ostrinia scapulalis, is similar to that in European corn borer. Huang YP, Takanashi T, Hoshizaki S, Tatsuki S, Ishikawa Y, O. nubilalis. Journal of Chemical Ecology 2002 28 3 533 539 10.1023/A:1014540011854 (Pubitemid 34270411)
16. Gene flow in the European corn borer Ostrinia nubilalis: implications for the sustainability of transgenic insecticidal maize. Bourguet D, Bethenod MT, Pasteur N, Viard F, Proceedings of the Royal Society Biological Sciences 2000 267 1439 117 122 10.1098/rspb.2000.0975 10687815 (Pubitemid 30077184)
17. Host-plant diversity of the European corn borer Ostrinia nubilalis: what value for sustainable transgenic insecticidal Bt maize? Bourguet D, Bethenod MT, Trouvé C, Viard F, Proceedings of the Royal Society Biological Sciences Series B 2000 267 1449 1177 1184 10.1098/rspb.2000.1126 (Pubitemid 30438416)
18. Host-plant-associated genetic differentiation in Northern French populations of the European corn borer. Martel C, Réjasse A, Rousset F, Bethenod MT, Bourguet D, Heredity 2003 90 2 141 149 10.1038/sj.hdy.6800186 12634820 (Pubitemid 36374548)
19. Genetic isolation between two sympatric host-plant races of the European corn borer, Ostrinia nubilalis Hübner. I. sex pheromone, moth emergence timing, and parasitism. Thomas Y, Bethenod MT, Pélozuelo L, Frérot B, Bourguet D, Evolution 2003 57 2 261 273 12683523 (Pubitemid 36333337)
20. Molecular differentiation at nuclear loci in French host races of the European corn borer (Ostrinia nubilalis). Malausa T, Leniaud L, Martin JF, Audiot P, Bourguet D, Ponsard S, Lee SF, Harrison RG, Dopman E, Genetics 2007 176 4 2343 2355 10.1534/genetics.107.072108 17603115 (Pubitemid 47360664)
21. From Russia with lobe: genetic differentiation in trilobed uncus Ostrinia spp. follows food plant, not hairy legs. Frolov AN, Audiot P, Bourguet D, Kononchuk AG, Malysh JM, Ponsard S, Streiff R, Tokarev YS, Heredity 2012 108 2 147 156 10.1038/hdy.2011.58 21772289
22. Basic local alignment search tool. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, J Mol Biol 1990 215 3 403 410 2231712
23. Accuracy and quality of massively parallel DNA pyrosequencing. Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM, Genome Biol 2007 8 143 10.1186/gb-2007-8-7-r143 17659080 (Pubitemid 351903194)
24. Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing. Gilles A, Meglécz E, Pech N, Ferreira S, Malausa T, Martin J-F, BMC Genomics 2011 12 245 10.1186/1471-2164-12-245 21592414
25. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M, Bioinformatics 2005 21 18 3674 3676 10.1093/bioinformatics/bti610 16081474 (Pubitemid 41264107)
26. FrameDP: sensitive peptide detection on noisy matured sequences. Gouzy J, Carrere S, Schiex T, Bioinformatics 2009 25 5 670 671 10.1093/bioinformatics/ btp024 19153134
27. Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon. O'Neil ST, Dzurisin JDK, Carmichael RD, Lobo NF, Emrich SJ, Hellmann JJ, BMC Genomics 2010 11 1 310 10.1186/1471-2164-11-310 20478048
28. The application and performance of single nucleotide polymorphism markers for population genetic analyses of Lepidoptera. Coates BS, Bayles DO, Wanner KW, Robertson HM, Hellmich RL, Sappington TW, Frontiers in genomic assay technology 2011 2 38
29. Mining an Ostrinia nubilalis midgut expressed sequence tag (EST) library for candidate genes and single nucleotide polymorphisms (SNPs). Coates BS, Sumerford DV, Hellmich RL, Lewis LC, Insect Molecular Biology 2008 17 6 607 620 10.1111/j.1365-2583.2008.00833.x 19133073
30. Sex pheromone receptor specificity in the European corn borer moth. Wanner KW, Nichols AS, Allen JE, Bunger PL, Garczynski SF, Linn CE, Robertson HM, Luetje CW, Ostrinia nubilalis. PLoS ONE 2010 5 1 8685 10.1371/journal.pone. 0008685
31. De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum). Logacheva MD, Kasianov AS, Vinogradov DV, Samigullin TH, Gelfand MS, Makeev VJ, Penin AA, BMC Genomics 2011 12 1 30 10.1186/1471-2164-12-30 21232141
32. Lepidoptera phylogeny and systematics: the state of inventorying moth and butterfly diversity. Kristensen NP, Scoble MJ, Karsholt O, Zootaxa 2007 1668 699 747 (Pubitemid 351147617)
33. The genome of a lepidopteran model insect, the silkworm Bombyx mori. The International Silkworm G, Insect Biochemistry and Molecular Biology 2008 38 12 1036 1045 10.1016/j.ibmb.2008.11.004 19121390
34. Transcriptome sequencing and rapid development and application of SNP markers for the legume pod borer Maruca vitrata (Lepidoptera: Crambidae). Liberles D, Margam VM, Coates BS, Bayles DO, Hellmich RL, Agunbiade T, Seufferheld MJ, Sun W, Kroemer JA, Ba MN, PLoS ONE 2011 6 7 21388 10.1371/journal.pone.0021388 21754987
35. Transcriptome sequencing, and rapid development and application of SNP markers for the legume pod borer Maruca vitrata (Lepidoptera: Crambidae). Margam VM, Coates BS, Bayles DO, Hellmich RL, Agunbiade T, Seufferheld MJ, Sun WL, Kroemer JA, Ba MN, Binso-Dabire CL, PLoS ONE 2011 6 7 21388 Epub 2011 Jul 6 10.1371/journal.pone.0021388 21754987
36. A comprehensive transcriptome and immune-gene repertoire of the lepidopteran model host Galleria mellonella. Vogel H, Altincicek B, Glöckner G, Vilcinskas A, BMC Genomics 2011 12 1 308 10.1186/1471-2164-12- 308 21663692
37. Pyrosequencing-based expression profiling and identification of differentially regulated genes from Manduca sexta, a lepidopteran model insect. Zhang S, Gunaratna RT, Zhang X, Najar F, Wang Y, Roe B, Jiang H, Insect Biochemistry and Molecular Biology 2011 41 9 733 746 10.1016/j.ibmb.2011.05.005 21641996
38. Journey in the Ostrinia World: from pest to model in chemical ecology. Lassance JM, Journal of Chemical Ecology 2010 36 10 1155 1169 10.1007/s10886-010-9856-5 20835755
39. The genome sequence of the malaria mosquito Anopheles gambiae. Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JMC, Wides R, Science 2002 298 5591 129 149 10.1126/science.1076181 12364791
40. 454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides. Zagrobelny M, Scheibye-Alsing K, Jensen N, Moller B, Gorodkin J, Bak S, BMC Genomics 2009 10 1 574 10.1186/1471-2164-10-574 19954531
41. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH, Molecular Ecology 2008 17 7 1636 1647 10.1111/j.1365-294X. 2008.03666.x 18266620 (Pubitemid 351441703)
42. The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus. Ewen-Campen B, Shaner N, Panfilio KA, Suzuki Y, Roth S, Extavour CG, BMC Genomics 2011 12 1 61 10.1186/1471-2164-12-61 21266083
43. Genetic changes accompanying the evolution of host specialization in Drosophila sechellia. Dworkin I, Jones CD, Genetics 2008 181 2 721 736 10.1534/genetics.108.093419 19033155
44. Ecological speciation in phytophagous insects. Matsubayashi KW, Ohshima I, Nosil P, Entomologia Experimentalis et Applicata 2010 134 1 1 27 10.1111/j.1570-7458.2009.00916.x
45. High similarity between flanking regions of different microsatellites detected within each of two species of Lepidoptera: Parnassius apollo and Euphydryas aurinia. Meglécz E, Petenian F, Danchin E, Coeur d'acier A, Rasplus JY, Faure E, Mol Ecol 2004 13 6 1693 1700 10.1111/j.1365-294X.2004. 02163.x 15140111 (Pubitemid 38688918)
46. High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries. Malausa T, Gilles A, Meglécz E, Blanquart H, Duthoy S, Costedoat C, Dubut V, Pech N, Castagnone-Sereno P, Délye C, Molecular Ecology Resources 2011 11 4 638 644 10.1111/j.1755-0998.2011.02992.x 21676194
47. Two multiplex sets of eight and five microsatellite markers for the European corn borer, Ostrinia nubilalis Hübner (Lepidoptera: Crambidae). Dalecky A, Bogdanowicz SM, Dopman EB, Bourguet D, Harrison RG, Molecular Ecology Notes 2006 6 3 945 947 10.1111/j.1471-8286.2006.01410.x (Pubitemid 44252657)
48. Isolation and characterization of microsatellite loci from the European corn borer, Ostrinia nubilalis (Hübner) (Insecta: Lepidoptera: Crambidae). Kim KS, Coates BS, Hellmich RL, Sumerford DV, Sappington TW, Molecular Ecology Resources 2008 8 2 409 411 10.1111/j.1471-8286.2007.01974.x 21585805 (Pubitemid 351224869)
49. An EST-based genome scan using 454 sequencing in the marine snail Littorina saxatilis. Galindo J, Grahame JW, Butlin RK, Journal of Evolutionary Biology 2010 23 9 2004 2016 10.1111/j.1420-9101.2010.02071.x 20695960
50. Coverage based consensus calling (CBCC) of short sequence reads and comparison of CBCC results to identify SNPs in chickpea (Cicer arietinum, Fabaceae), a crop species without a reference genome. Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, American Journal of Botany 2012 99 2 186 192 10.3732/ajb.1100419 22301893
51. EMBOSS: The European molecular biology open software suite. Rice P, Longden I, Bleasby A, Trends in Genetics 2000 16 6 276 277 10.1016/S0168- 9525(00)02024-2 10827456