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Volumn 6, Issue 7, 2011, Pages

Transcriptome sequencing, and rapid development and application of snp markers for the legume pod borer maruca vitrata (lepidoptera: Crambidae)

(17)  Margam, Venu M a   Coates, Brad S b   Bayles, Darrell O b   Hellmich, Richard L b   Agunbiade, Tolulope c   Seufferheld, Manfredo J c   Sun, Weilin c   Kroemer, Jeremy A b   Ba, Malick N d   Binso Dabire, Clementine L d   Baoua, Ibrahim e   Ishiyaku, Mohammad F f   Covas, Fernando G g   Srinivasan, Ramasamy h   Armstrong, Joel i   Murdock, Larry L a   Pittendrigh, Barry R c  


Author keywords

[No Author keywords available]

Indexed keywords

ADULT ANIMAL; AFRICA; ANIMAL TISSUE; ARTHROPOD LARVA; ARTICLE; BACILLUS THURINGIENSIS; BIOLOGICAL CONTROL AGENT; COWPEA; EXPRESSED SEQUENCE TAG; GENE FLOW; GENETIC MARKER; LEGUME; LEPIDOPTERA; MARUCA VITRATA; MIDGUT; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; POPULATION GENETIC STRUCTURE; PYROSEQUENCING; SALIVARY GLAND; SEQUENCE HOMOLOGY; SILKWORM; SINGLE NUCLEOTIDE POLYMORPHISM; TRANSCRIPTOMICS; TRANSGENIC PLANT; UNINDEXED SEQUENCE; ANIMAL; COMPUTER PROGRAM; DIGESTIVE SYSTEM; DNA SEQUENCE; FRUIT; GENE; GENE EXPRESSION PROFILING; GENETIC DATABASE; GENETICS; GENOTYPE; GEOGRAPHY; LARVA; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; PARASITOLOGY; PHYLOGENY; POPULATION GENETICS; REGRESSION ANALYSIS;

EID: 79959942473     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0021388     Document Type: Article
Times cited : (30)

References (86)
  • 1
    • 0010228057 scopus 로고
    • Record of Host-Plants of Maruca testulalis (Geyer) (Lepidoptera, Pyralidae) in Republic-of-Benin
    • Atachi P, Djihou ZC, (1994) Record of Host-Plants of Maruca testulalis (Geyer) (Lepidoptera, Pyralidae) in Republic-of-Benin. Annales De La Societe Entomologique De France 30: 169-174.
    • (1994) Annales De La Societe Entomologique De France , vol.30 , pp. 169-174
    • Atachi, P.1    Djihou, Z.C.2
  • 2
    • 0010257152 scopus 로고
    • Report on the insect pests of grain legumes in northern Nigeria
    • 1st IITA Grain Legume Improvement Workshop (1973): International Institute of Tropical Agriculture, Ibadan, Nigeria
    • Raheja AI, (1974) Report on the insect pests of grain legumes in northern Nigeria. pp. 295-299 1st IITA Grain Legume Improvement Workshop (1973): International Institute of Tropical Agriculture, Ibadan, Nigeria.
    • (1974) , pp. 295-299
    • Raheja, A.I.1
  • 3
    • 0000722010 scopus 로고
    • The bionomics of Maruca testulalis Gey. (Lepidoptera: Pyralidae), a major pest of cowpeas in Nigeria
    • Taylor TA, (1967) The bionomics of Maruca testulalis Gey. (Lepidoptera: Pyralidae), a major pest of cowpeas in Nigeria. J of West African Scient Assoc 12: 111-129.
    • (1967) J of West African Scient Assoc , vol.12 , pp. 111-129
    • Taylor, T.A.1
  • 5
    • 79551618717 scopus 로고    scopus 로고
    • Legumes in rice-based cropping systems in Cambodia: Constraints and opportunities
    • In: Gowda CLL, Ramakrishna A, Rupela OP, Wani SP, editors, ICRISAT, India
    • Soeun M, (2001) Legumes in rice-based cropping systems in Cambodia: Constraints and opportunities. In: Gowda CLL, Ramakrishna A, Rupela OP, Wani SP, editors. Legumes in rice-based cropping systems in tropical Asia: Constraints and Opportunities ICRISAT, India pp. 4-10.
    • (2001) Legumes in Rice-Based Cropping Systems in Tropical Asia: Constraints and Opportunities , pp. 4-10
    • Soeun, M.1
  • 8
    • 0001963640 scopus 로고
    • Susceptibility of some early varieties of pigeonpea for pod borers under protected conditions
    • Patnaik HP, Samolo AP, Samolo BN, (1986) Susceptibility of some early varieties of pigeonpea for pod borers under protected conditions. Legume Research 9: 7-10.
    • (1986) Legume Research , vol.9 , pp. 7-10
    • Patnaik, H.P.1    Samolo, A.P.2    Samolo, B.N.3
  • 9
    • 79551620982 scopus 로고
    • Pest complex of flower and pods of pegionpea and their control through insecticide application Bangladesh
    • Rahman MM, (1989) Pest complex of flower and pods of pegionpea and their control through insecticide application Bangladesh. Journal of Scientific Research 7: 27-32.
    • (1989) Journal of Scientific Research , vol.7 , pp. 27-32
    • Rahman, M.M.1
  • 10
    • 0032123239 scopus 로고    scopus 로고
    • Bionomics, host plant resistance, and management of the legume pod borer, Maruca vitrata - a review.
    • Sharma HC, (1998) Bionomics, host plant resistance, and management of the legume pod borer, Maruca vitrata- a review. Crop Protection 17: 373-386.
    • (1998) Crop Protection , vol.17 , pp. 373-386
    • Sharma, H.C.1
  • 11
    • 4644243256 scopus 로고    scopus 로고
    • How have the world's poorest fared since the early 1980s?
    • Chen S, Ravallion M, (2004) How have the world's poorest fared since the early 1980s? World Bank Research Observer 19: 141-169.
    • (2004) World Bank Research Observer , vol.19 , pp. 141-169
    • Chen, S.1    Ravallion, M.2
  • 13
    • 79951579145 scopus 로고    scopus 로고
    • The potential for controlling Maruca vitrata Fab. and Clavigralla tomentosicollis Stal. using different concentrations and spraying schedules of Syzigium aromaticum (L.) Merr and Perr on cowpea plants
    • Oparaeke AM, (2006) The potential for controlling Maruca vitrata Fab. and Clavigralla tomentosicollis Stal. using different concentrations and spraying schedules of Syzigium aromaticum (L.) Merr and Perr on cowpea plants. Journal of Plant Sciences 1: 132-137.
    • (2006) Journal of Plant Sciences , vol.1 , pp. 132-137
    • Oparaeke, A.M.1
  • 14
    • 0025879424 scopus 로고
    • Complementary DNA sequencing: expressed sequence tags and human genome project
    • Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, et al. (1991) Complementary DNA sequencing: expressed sequence tags and human genome project. Science 252: 1651-1656.
    • (1991) Science , vol.252 , pp. 1651-1656
    • Adams, M.D.1    Kelley, J.M.2    Gocayne, J.D.3    Dubnick, M.4    Polymeropoulos, M.H.5
  • 15
    • 11944257656 scopus 로고
    • Caenorhabditis elegans expressed sequence tags identify gene families and potential disease gene homologues
    • McCombie WR, Adams MD, Kelley JM, FitzGerald MG, Utterback TR, et al. (1992) Caenorhabditis elegans expressed sequence tags identify gene families and potential disease gene homologues. Nat Genet 1: 124-131.
    • (1992) Nat Genet , vol.1 , pp. 124-131
    • McCombie, W.R.1    Adams, M.D.2    Kelley, J.M.3    FitzGerald, M.G.4    Utterback, T.R.5
  • 16
    • 33846474760 scopus 로고    scopus 로고
    • A hitchhiker's guide to expressed sequence tag (EST) analysis
    • Nagaraj SH, Gasser RB, Ranganathan S, (2007) A hitchhiker's guide to expressed sequence tag (EST) analysis. Brief Bioinform 8: 6-21.
    • (2007) Brief Bioinform , vol.8 , pp. 6-21
    • Nagaraj, S.H.1    Gasser, R.B.2    Ranganathan, S.3
  • 17
    • 42249097439 scopus 로고    scopus 로고
    • Annotated ESTs from various tissues of the brown planthopper Nilaparvata lugens: a genomic resource for studying agricultural pests
    • Noda H, Kawai S, Koizumi Y, Matsui K, Zhang Q, et al. (2008) Annotated ESTs from various tissues of the brown planthopper Nilaparvata lugens: a genomic resource for studying agricultural pests. BMC Genomics 9: 117.
    • (2008) BMC Genomics , vol.9 , pp. 117
    • Noda, H.1    Kawai, S.2    Koizumi, Y.3    Matsui, K.4    Zhang, Q.5
  • 18
    • 55649098623 scopus 로고    scopus 로고
    • Mining an Ostrinia nubilalis midgut expressed sequence tag (EST) library for candidate genes and single nucleotide polymorphisms (SNPs)
    • Coates BS, Sumerford DV, Hellmich RL, Lewis LC, (2008) Mining an Ostrinia nubilalis midgut expressed sequence tag (EST) library for candidate genes and single nucleotide polymorphisms (SNPs). Insect Mol Biol 17: 607-620.
    • (2008) Insect Mol Biol , vol.17 , pp. 607-620
    • Coates, B.S.1    Sumerford, D.V.2    Hellmich, R.L.3    Lewis, L.C.4
  • 19
    • 68349115042 scopus 로고    scopus 로고
    • Expressed sequence tags from larval gut of the European corn borer (Ostrinia nubilalis): exploring candidate genes potentially involved in Bacillus thuringiensis toxicity and resistance
    • Khajuria C, Zhu YC, Chen MS, Buschman LL, Higgins RA, et al. (2009) Expressed sequence tags from larval gut of the European corn borer (Ostrinia nubilalis): exploring candidate genes potentially involved in Bacillus thuringiensis toxicity and resistance. BMC Genomics 10: 286.
    • (2009) BMC Genomics , vol.10 , pp. 286
    • Khajuria, C.1    Zhu, Y.C.2    Chen, M.S.3    Buschman, L.L.4    Higgins, R.A.5
  • 20
    • 17444424279 scopus 로고    scopus 로고
    • Expressed sequence tags from Diabrotica virgifera virgifera midgut identify a coleopteran cadherin and a diversity of cathepsins
    • Siegfried BD, Waterfield N, ffrench-Constant RH, (2005) Expressed sequence tags from Diabrotica virgifera virgifera midgut identify a coleopteran cadherin and a diversity of cathepsins. Insect Mol Biol 14: 137-143.
    • (2005) Insect Mol Biol , vol.14 , pp. 137-143
    • Siegfried, B.D.1    Waterfield, N.2    ffrench-Constant, R.H.3
  • 21
    • 0035153070 scopus 로고    scopus 로고
    • Pyrosequencing sheds light on DNA sequencing
    • Ronaghi M, (2001) Pyrosequencing sheds light on DNA sequencing. Genome Res 11: 3-11.
    • (2001) Genome Res , vol.11 , pp. 3-11
    • Ronaghi, M.1
  • 22
    • 0032540905 scopus 로고    scopus 로고
    • A sequencing method based on real-time pyrophosphate
    • Ronaghi M, Uhlen M, Nyren P, (1998) A sequencing method based on real-time pyrophosphate. Science 281: 363, 365.
    • (1998) Science , vol.281 , pp. 363-365
    • Ronaghi, M.1    Uhlen, M.2    Nyren, P.3
  • 23
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4    Bader, J.S.5
  • 24
  • 25
    • 41149167170 scopus 로고    scopus 로고
    • Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
    • Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, et al. (2008) Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Mol Ecol 17: 1636-1647.
    • (2008) Mol Ecol , vol.17 , pp. 1636-1647
    • Vera, J.C.1    Wheat, C.W.2    Fescemyer, H.W.3    Frilander, M.J.4    Crawford, D.L.5
  • 26
    • 73649120985 scopus 로고    scopus 로고
    • Pyrosequencing the Manduca sexta larval midgut transcriptome: messages for digestion, detoxification and defence
    • Pauchet Y, Wilkinson P, Vogel H, Nelson DR, Reynolds SE, et al. (2010) Pyrosequencing the Manduca sexta larval midgut transcriptome: messages for digestion, detoxification and defence. Insect Mol Biol 19: 61-75.
    • (2010) Insect Mol Biol , vol.19 , pp. 61-75
    • Pauchet, Y.1    Wilkinson, P.2    Vogel, H.3    Nelson, D.R.4    Reynolds, S.E.5
  • 27
    • 70749157385 scopus 로고    scopus 로고
    • Phylogenetic relatedness and host plant growth form influence gene expression of the polyphagous comma butterfly (Polygonia c-album)
    • Heidel-Fischer HM, Freitak D, Janz N, Soderlind L, Vogel H, et al. (2009) Phylogenetic relatedness and host plant growth form influence gene expression of the polyphagous comma butterfly (Polygonia c-album). BMC Genomics 10: 506.
    • (2009) BMC Genomics , vol.10 , pp. 506
    • Heidel-Fischer, H.M.1    Freitak, D.2    Janz, N.3    Soderlind, L.4    Vogel, H.5
  • 29
    • 70349404174 scopus 로고    scopus 로고
    • Generation of a preliminary bovine gene atlas, using expression clustering to annotate gene function
    • Keane OM, Maqbool N, McCulloch AF, McEwan JC, Dodds KG, (2009) Generation of a preliminary bovine gene atlas, using expression clustering to annotate gene function. Genet Mol Res 8: 1013-1027.
    • (2009) Genet Mol Res , vol.8 , pp. 1013-1027
    • Keane, O.M.1    Maqbool, N.2    McCulloch, A.F.3    McEwan, J.C.4    Dodds, K.G.5
  • 30
    • 34547844090 scopus 로고    scopus 로고
    • SNP detection exploiting multiple sources of redundancy in large EST collections improves validation rates
    • Hayes BJ, Nilsen K, Berg PR, Grindflek E, Lien S, (2007) SNP detection exploiting multiple sources of redundancy in large EST collections improves validation rates. Bioinformatics 23: 1692-1693.
    • (2007) Bioinformatics , vol.23 , pp. 1692-1693
    • Hayes, B.J.1    Nilsen, K.2    Berg, P.R.3    Grindflek, E.4    Lien, S.5
  • 31
    • 32544433324 scopus 로고    scopus 로고
    • SEAN: SNP prediction and display program utilizing EST sequence clusters
    • Huntley D, Baldo A, Johri S, Sergot M, (2006) SEAN: SNP prediction and display program utilizing EST sequence clusters. Bioinformatics 22: 495-496.
    • (2006) Bioinformatics , vol.22 , pp. 495-496
    • Huntley, D.1    Baldo, A.2    Johri, S.3    Sergot, M.4
  • 32
    • 33748126341 scopus 로고    scopus 로고
    • Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs
    • Pavy N, Parsons LS, Paule C, MacKay J, Bousquet J, (2006) Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs. BMC Genomics 7: 174.
    • (2006) BMC Genomics , vol.7 , pp. 174
    • Pavy, N.1    Parsons, L.S.2    Paule, C.3    MacKay, J.4    Bousquet, J.5
  • 33
    • 0035756174 scopus 로고    scopus 로고
    • High-throughput identification, database storage and analysis of SNPs in EST sequences
    • Useche FJ, Gao G, Harafey M, Rafalski A, (2001) High-throughput identification, database storage and analysis of SNPs in EST sequences. Genome Inform 12: 194-203.
    • (2001) Genome Inform , vol.12 , pp. 194-203
    • Useche, F.J.1    Gao, G.2    Harafey, M.3    Rafalski, A.4
  • 34
    • 30344469564 scopus 로고    scopus 로고
    • Comparison of microsatellites, single-nucleotide polymorphisms (SNPs) and composite markers derived from SNPs in linkage analysis
    • Xing C, Schumacher FR, Xing G, Lu Q, Wang T, et al. (2005) Comparison of microsatellites, single-nucleotide polymorphisms (SNPs) and composite markers derived from SNPs in linkage analysis. BMC Genet 6 (Suppl 1): S29.
    • (2005) BMC Genet , vol.6 , Issue.SUPPL. 1
    • Xing, C.1    Schumacher, F.R.2    Xing, G.3    Lu, Q.4    Wang, T.5
  • 36
    • 0035983148 scopus 로고    scopus 로고
    • A review on SNP and other types of molecular markers and their use in animal genetics
    • Vignal A, Milan D, SanCristobal M, Eggen A, (2002) A review on SNP and other types of molecular markers and their use in animal genetics. Genet Sel Evol 34: 275-305.
    • (2002) Genet Sel Evol , vol.34 , pp. 275-305
    • Vignal, A.1    Milan, D.2    SanCristobal, M.3    Eggen, A.4
  • 37
    • 77951584527 scopus 로고    scopus 로고
    • SNP identification, verification, and utility for population genetics in a non-model genus
    • Williams LM, Ma X, Boyko AR, Bustamante CD, Oleksiak MF, (2010) SNP identification, verification, and utility for population genetics in a non-model genus. BMC Genet 11: 32.
    • (2010) BMC Genet , vol.11 , pp. 32
    • Williams, L.M.1    Ma, X.2    Boyko, A.R.3    Bustamante, C.D.4    Oleksiak, M.F.5
  • 38
    • 61449157815 scopus 로고    scopus 로고
    • A gene-based linkage map for Bicyclus anynana butterflies allows for a comprehensive analysis of synteny with the lepidopteran reference genome
    • Beldade P, Saenko SV, Pul N, Long AD, (2009) A gene-based linkage map for Bicyclus anynana butterflies allows for a comprehensive analysis of synteny with the lepidopteran reference genome. PLoS Genet 5: e1000366.
    • (2009) PLoS Genet , vol.5
    • Beldade, P.1    Saenko, S.V.2    Pul, N.3    Long, A.D.4
  • 39
    • 2542465217 scopus 로고    scopus 로고
    • High similarity between flanking regions of different microsatellites detected within each of two species of Lepidoptera: Parnassius apollo and Euphydryas aurinia
    • Meglecz E, Petenian F, Danchin E, D'Acier AC, Rasplus JY, et al. (2004) High similarity between flanking regions of different microsatellites detected within each of two species of Lepidoptera: Parnassius apollo and Euphydryas aurinia. Mol Ecol 13: 1693-1700.
    • (2004) Mol Ecol , vol.13 , pp. 1693-1700
    • Meglecz, E.1    Petenian, F.2    Danchin, E.3    D'Acier, A.C.4    Rasplus, J.Y.5
  • 40
    • 34247620233 scopus 로고    scopus 로고
    • Evolutionary dynamics of multilocus microsatellite arrangements in the genome of the butterfly Bicyclus anynana, with implications for other Lepidoptera
    • Van't Hof AE, Brakefield PM, Saccheri IJ, Zwaan BJ, (2007) Evolutionary dynamics of multilocus microsatellite arrangements in the genome of the butterfly Bicyclus anynana, with implications for other Lepidoptera. Heredity 98: 320-328.
    • (2007) Heredity , vol.98 , pp. 320-328
    • Van't Hof, A.E.1    Brakefield, P.M.2    Saccheri, I.J.3    Zwaan, B.J.4
  • 41
    • 4544313277 scopus 로고    scopus 로고
    • Lepidopteran microsatellite DNA: redundant but promising
    • Zhang DX, (2004) Lepidopteran microsatellite DNA: redundant but promising. Trends Ecol Evol 19: 507-509.
    • (2004) Trends Ecol Evol , vol.19 , pp. 507-509
    • Zhang, D.X.1
  • 42
    • 65349175865 scopus 로고    scopus 로고
    • Repetitive genome elements in a European corn borer, Ostrinia nubilalis, bacterial artificial chromosome library were indicated by bacterial artificial chromosome end sequencing and development of sequence tag site markers: implications for lepidopteran genomic research
    • Coates BS, Sumerford DV, Hellmich RL, Lewis LC, (2009) Repetitive genome elements in a European corn borer, Ostrinia nubilalis, bacterial artificial chromosome library were indicated by bacterial artificial chromosome end sequencing and development of sequence tag site markers: implications for lepidopteran genomic research. Genome 52: 57-67.
    • (2009) Genome , vol.52 , pp. 57-67
    • Coates, B.S.1    Sumerford, D.V.2    Hellmich, R.L.3    Lewis, L.C.4
  • 43
    • 77952150578 scopus 로고    scopus 로고
    • Generation of microsatellite repeat families by RTE retrotransposons in lepidopteran genomes
    • Tay WT, Behere GT, Batterham P, Heckel DG, (2010) Generation of microsatellite repeat families by RTE retrotransposons in lepidopteran genomes. BMC Evol Biol 10: 144.
    • (2010) BMC Evol Biol , vol.10 , pp. 144
    • Tay, W.T.1    Behere, G.T.2    Batterham, P.3    Heckel, D.G.4
  • 44
    • 78651312094 scopus 로고    scopus 로고
    • A novel class of miniature inverted repeat transposable elements (MITEs) that contain hitchhiking (GTCY)(n) microsatellites
    • Coates BS, Kroemer JA, Sumerford DV, Hellmich RL, (2011) A novel class of miniature inverted repeat transposable elements (MITEs) that contain hitchhiking (GTCY)(n) microsatellites. Insect Mol Biol 20: 15-27.
    • (2011) Insect Mol Biol , vol.20 , pp. 15-27
    • Coates, B.S.1    Kroemer, J.A.2    Sumerford, D.V.3    Hellmich, R.L.4
  • 45
    • 77952093712 scopus 로고    scopus 로고
    • A helitron-like transposon superfamily from lepidoptera disrupts (GAAA)(n) microsatellites and is responsible for flanking sequence similarity within a microsatellite family.
    • Coates BS, Sumerford DV, Hellmich RL, Lewis LC, (2010) A helitron-like transposon superfamily from lepidoptera disrupts (GAAA)(n) microsatellites and is responsible for flanking sequence similarity within a microsatellite family.J Mol Evol 70: 275-288.
    • (2010) J Mol Evol , vol.70 , pp. 275-288
    • Coates, B.S.1    Sumerford, D.V.2    Hellmich, R.L.3    Lewis, L.C.4
  • 46
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5
  • 48
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schäffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 51
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • Kanehisa M, Goto S, (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28: 27-30.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 52
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
    • (1999) Nucleic Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 53
    • 33747816814 scopus 로고    scopus 로고
    • Virtual Ribosome-a comprehensive DNA translation tool with support for integration of sequence feature annotation
    • Wernersson R, (2006) Virtual Ribosome-a comprehensive DNA translation tool with support for integration of sequence feature annotation. Nucleic Acids Res 34: W385-388.
    • (2006) Nucleic Acids Res , vol.34 , pp. 385-388
    • Wernersson, R.1
  • 54
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
    • In press
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, (2011) MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol and Evol In press.
    • (2011) Mol Biol and Evol
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 55
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M, (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 56
    • 0028338820 scopus 로고
    • Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites
    • Ota T, Nei M, (1994) Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites. Journal of Molecular Evolution 38: 642-643.
    • (1994) Journal of Molecular Evolution , vol.38 , pp. 642-643
    • Ota, T.1    Nei, M.2
  • 57
    • 0000461280 scopus 로고
    • CONFIDENCE-LIMITS ON PHYLOGENIES - AN APPROACH USING THE BOOTSTRAP
    • Felsenstein J, (1985) CONFIDENCE-LIMITS ON PHYLOGENIES- AN APPROACH USING THE BOOTSTRAP. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 60
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin (version 3.0): an integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S, (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50.
    • (2005) Evol Bioinform Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 61
    • 0021643790 scopus 로고
    • Covariances of relatives stemming from a population undergoing mixed self and random mating
    • Cockerham CC, Weir BS, (1984) Covariances of relatives stemming from a population undergoing mixed self and random mating. Biometrics 40: 157-164.
    • (1984) Biometrics , vol.40 , pp. 157-164
    • Cockerham, C.C.1    Weir, B.S.2
  • 62
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data
    • Excoffier L, Smouse PE, Quattro JM, (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 63
    • 0026764459 scopus 로고
    • Independence of VNTR alleles defined as fixed bins
    • Weir BS, (1992) Independence of VNTR alleles defined as fixed bins. Genetics 130: 873-887.
    • (1992) Genetics , vol.130 , pp. 873-887
    • Weir, B.S.1
  • 65
    • 34447120219 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: dominant markers and null alleles
    • Falush D, Stephens M, Pritchard JK, (2007) Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Notes 7: 574-578.
    • (2007) Mol Ecol Notes , vol.7 , pp. 574-578
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 66
    • 68949103876 scopus 로고    scopus 로고
    • Inferring weak population structure with the assistance of sampling group information
    • Hubisz MJ, Falush D, Stephens M, Pritchard JK, (2009) Inferring weak population structure with the assistance of sampling group information. Molecular Ecology Resources 9: 1322-1332.
    • (2009) Molecular Ecology Resources , vol.9 , pp. 1322-1332
    • Hubisz, M.J.1    Falush, D.2    Stephens, M.3    Pritchard, J.K.4
  • 67
    • 59949093527 scopus 로고    scopus 로고
    • De novo fragment assembly with short mate-paired reads: Does the read length matter?
    • Chaisson MJ, Brinza D, Pevzner PA, (2009) De novo fragment assembly with short mate-paired reads: Does the read length matter? Genome Research pp. 336-346.
    • (2009) Genome Research , pp. 336-346
    • Chaisson, M.J.1    Brinza, D.2    Pevzner, P.A.3
  • 71
    • 25444527442 scopus 로고    scopus 로고
    • SNPs in forensic genetics: a review on SNP typing methodologies
    • Sobrino B, Brion M, Carracedo A, (2005) SNPs in forensic genetics: a review on SNP typing methodologies. Forensic Sci Int 154: 181-194.
    • (2005) Forensic Sci Int , vol.154 , pp. 181-194
    • Sobrino, B.1    Brion, M.2    Carracedo, A.3
  • 73
    • 0036008761 scopus 로고    scopus 로고
    • Applications of single nucleotide polymorphisms in crop genetics
    • Rafalski A, (2002) Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol 5: 94-100.
    • (2002) Curr Opin Plant Biol , vol.5 , pp. 94-100
    • Rafalski, A.1
  • 74
    • 77349083472 scopus 로고    scopus 로고
    • Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
    • Wang S, Peatman E, Abernathy J, Waldbieser G, Lindquist E, et al. (2010) Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies. Genome Biol 11: R8.
    • (2010) Genome Biol , vol.11
    • Wang, S.1    Peatman, E.2    Abernathy, J.3    Waldbieser, G.4    Lindquist, E.5
  • 76
    • 58149327065 scopus 로고    scopus 로고
    • SNP discovery in swine by reduced representation and high throughput pyrosequencing
    • Wiedmann RT, Smith TPL, Nonneman DJ, (2008) SNP discovery in swine by reduced representation and high throughput pyrosequencing. BMC Genomics 9: 81.
    • (2008) BMC Genomics , vol.9 , pp. 81
    • Wiedmann, R.T.1    Smith, T.P.L.2    Nonneman, D.J.3
  • 77
    • 77951584527 scopus 로고    scopus 로고
    • SNP identification, verification, and utility for population genetics in a non-model species
    • Williams LM, Ma X, Boyko AR, Bustamante CD, Oleksiak MF, (2010) SNP identification, verification, and utility for population genetics in a non-model species. BMC Genomics 11: 32.
    • (2010) BMC Genomics , vol.11 , pp. 32
    • Williams, L.M.1    Ma, X.2    Boyko, A.R.3    Bustamante, C.D.4    Oleksiak, M.F.5
  • 78
    • 78449278688 scopus 로고    scopus 로고
    • High incidence of cryptic repeated elements in microsatellite flanking regions of Galatheid genomes and its practical implications for molecular marker development
    • Bailie DA, Fletcher H, Prodohl PA, (2010) High incidence of cryptic repeated elements in microsatellite flanking regions of Galatheid genomes and its practical implications for molecular marker development. J Crustacean Biol 30: 664-672.
    • (2010) J Crustacean Biol , vol.30 , pp. 664-672
    • Bailie, D.A.1    Fletcher, H.2    Prodohl, P.A.3
  • 79
    • 78650309881 scopus 로고    scopus 로고
    • Comparative genomic analysis reveals species-dependent complexities that explain difficulties with microsatellite marker development in molluscs
    • McInerney CE, Allock AL, Johnson MP, Bailie DA, Prodohl PA, (2011) Comparative genomic analysis reveals species-dependent complexities that explain difficulties with microsatellite marker development in molluscs. Heredity 106: 78-87.
    • (2011) Heredity , vol.106 , pp. 78-87
    • McInerney, C.E.1    Allock, A.L.2    Johnson, M.P.3    Bailie, D.A.4    Prodohl, P.A.5
  • 80
    • 77952150578 scopus 로고    scopus 로고
    • Generation of microsatellite repeat families by RTE transposons in lepidopteran genomes
    • Tay WT, Behere GT, Batterhan P, Heckel DG, (2010) Generation of microsatellite repeat families by RTE transposons in lepidopteran genomes. BMC Evol Biol 10: 144.
    • (2010) BMC Evol Biol , vol.10 , pp. 144
    • Tay, W.T.1    Behere, G.T.2    Batterhan, P.3    Heckel, D.G.4
  • 82
    • 33744454449 scopus 로고    scopus 로고
    • Construction of a single nucleotide polymorphism linkage map for the silkworm, Bombyx mori, based on bacterial artificial chromosome end sequences
    • Yamamoto K, Narukawa J, Kadono-Okuda K, Nohata J, Sasanuma M, et al. (2006) Construction of a single nucleotide polymorphism linkage map for the silkworm, Bombyx mori, based on bacterial artificial chromosome end sequences. Genetics 173: 151-161.
    • (2006) Genetics , vol.173 , pp. 151-161
    • Yamamoto, K.1    Narukawa, J.2    Kadono-Okuda, K.3    Nohata, J.4    Sasanuma, M.5
  • 83
    • 61449157815 scopus 로고    scopus 로고
    • A gene-based linkage map of Bicyclus anynana butterflies allows for a comprehensive analysis of synteny with the lepidopteran reference genome
    • Beldade P, Saenko SV, Pul N, Long AD, (2010) A gene-based linkage map of Bicyclus anynana butterflies allows for a comprehensive analysis of synteny with the lepidopteran reference genome. PLoS Genet 5: e1000366.
    • (2010) PLoS Genet , vol.5
    • Beldade, P.1    Saenko, S.V.2    Pul, N.3    Long, A.D.4
  • 84
    • 77955323587 scopus 로고    scopus 로고
    • Combining next-generation sequencing strategies for rapid molecular resource development from an invasive aphid species, Aphis glycines
    • Bai X, Zhang W, Orantes L, Jun TH, Mittapalli O, et al. (2010) Combining next-generation sequencing strategies for rapid molecular resource development from an invasive aphid species, Aphis glycines. PLoS One 5: e11370.
    • (2010) PLoS One , vol.5
    • Bai, X.1    Zhang, W.2    Orantes, L.3    Jun, T.H.4    Mittapalli, O.5
  • 85
    • 0002007882 scopus 로고
    • Screening techniques for host plant resistance to insect pests of cowpea
    • Jackai LEN, Singh SR, (1988) Screening techniques for host plant resistance to insect pests of cowpea. Tropical Grain Legume Bulletin 35: 2-18.
    • (1988) Tropical Grain Legume Bulletin , vol.35 , pp. 2-18
    • Jackai, L.E.N.1    Singh, S.R.2
  • 86
    • 0026314219 scopus 로고
    • Studies on cowpea farming practices in Nigeria with emphasis on insect's pest control
    • Alghali AM, (1991) Studies on cowpea farming practices in Nigeria with emphasis on insect's pest control. Trop Pest Manage 37: 71-74.
    • (1991) Trop Pest Manage , vol.37 , pp. 71-74
    • Alghali, A.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.