Characterization and immobilization of a novel SGNH hydrolase (Est24) from Sinorhizobium meliloti

Applied Microbiology and Biotechnology

Volumn 97, Issue 4, 2013, Pages 1637-1647

  Bae, Song Yi ^a   Ryu, Bum Han ^a   Jang, Eunjin ^a   Kim, Seulgi ^a   Kim, T Doohun ^a  

^a Ajou University   (South Korea)

Author keywords

Est24; Immobilization; Industrial applications; SGNH hydrolase

Indexed keywords

ALKALINE PH; AMYLOID FIBRIL; CATALYTIC TRIAD; CROSS-LINKED ENZYME AGGREGATES; EST24; HIGH THERMAL STABILITY; INITIAL ACTIVITY; MESOPHILIC TEMPERATURE; OPTIMUM ACTIVITY; P-NITROPHENYL ACETATE; SEQUENCE ANALYSIS; SGNH HYDROLASE; SINORHIZOBIUM MELILOTI; SUBSTRATE-BINDING;

ALKALINITY; CHEMICAL INDUSTRY; ESCHERICHIA COLI; GLYCOPROTEINS; INDUSTRIAL APPLICATIONS; NAPHTHALENE; OLIGOMERS; RADIOACTIVE WASTE VITRIFICATION; VOLATILE FATTY ACIDS;

HYDROLASES;

1 NAPHTHYL ACETATE; 3 HYDROXY 2 METHYLPROPIONIC ACID METHYL ESTER; 4 NITROPHENYL ACETATE; ACETIC ACID DERIVATIVE; AMYLOID; BUTYRIC ACID; ESTER; HYDROLASE; HYDROLASE SGNH; PROPIONIC ACID; UNCLASSIFIED DRUG; VALERIC ACID;

BACTERIOLOGY; BACTERIUM; BIOTECHNOLOGY; CATALYSIS; CHEMICAL INDUSTRY; ENZYME ACTIVITY; ESTER; IMMOBILIZATION; INDUSTRIAL PRACTICE; MUTATION; PH; PHARMACEUTICAL INDUSTRY;

ALKALINITY; ARTICLE; CATALYSIS; CONTROLLED STUDY; ENANTIOSELECTIVITY; ENZYME ANALYSIS; ENZYME IMMOBILIZATION; ENZYME SUBSTRATE COMPLEX; MOLECULAR MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN CROSS LINKING; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SINORHIZOBIUM MELILOTI; SITE DIRECTED MUTAGENESIS; STEREOCHEMISTRY; TEMPERATURE; THERMOSTABILITY;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; ENZYME STABILITY; ENZYMES, IMMOBILIZED; HYDROLASES; KINETICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ALIGNMENT; SINORHIZOBIUM MELILOTI; SUBSTRATE SPECIFICITY;

ESCHERICHIA COLI; SINORHIZOBIUM MELILOTI;

EID: 84874375678     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-012-4038-8     Document Type: Article

References (35)

1. Ahn M, Kim S, Kang M, Ryu Y, Kim TD (2006) Chaperone-like activities of alpha-synuclein: alpha-synuclein assists enzyme activities of esterases. Biochem Biophys Res Commun 346:1142-1149
2. Akoh CC, Lee GC, Liaw YC, Huang TH, Shaw JF (2004) GDSL family of serine esterases/lipases. Prog Lipid Res 43:534-552
3. Arpigny JL, Jaeger KE (1999) Bacterial lipolytic enzymes: classification and properties. Biochem J 343:177-183
4. Bae SY, Kim S, Lee BY, Kim KK, Kim TD (2011) Amyloid formation using 1-butyl-3-methyl-imidazolium-based ionic liquids. Anal Biochem 419:354-356
5. Bakshy K, Gummadi SN, Manoj N (2009) Biochemical characterization of Alr1529, a novel SGNH hydrolase variant from Anabaena sp. PCC 7120. Biochim Biophys Acta 1794:324-334
6. Bielen A, Cetković H, Long PF, Schwab H, Abramić M, Vujaklija D (2009) The SGNH-hydrolase of Streptomyces coelicolor has (aryl)esterase and a true lipase activity. Biochimie 91:390-400
7. Bornscheuer UT (2002) Microbial carboxyl esterases: classification, properties and application in biocatalysis. FEMS Microbiol Rev 26:73-81
8. Brady D, Jordaan J (2009) Advances in enzyme immobilisation. Biotechnol Lett 31:1639-1650
9. Carr PD, Ollis DL (2009) Alpha/beta hydrolase fold: an update. Protein Pept Lett 16:1137-1148
10. Gouet P, Robert X, Courcelle E (2003) ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins. Nucleic Acids Res 31(13):3320-3323
11. Hwang H, Choi H, Kim HK, Jodo H, Kim TD (2009) Ionic liquids promote amyloid formation from alpha-synuclein. Anal Biochem 386:293-295
12. Hwang H, Kim S, Yoon S, Ryu Y, Lee SY, Kim TD (2010) Characterization of a novel oligomeric SGNH-arylesterase from Sinorhizobium meliloti 1021. Int J Biol Macromol 46:145-152
13. Jaeger KE, Eggert T (2002) Lipases for biotechnology. Curr Opin Biotechnol 13:390-397
14. Kim S, Bae SY, Kim SJ, Ngo TD, Kim KK, Kim TD (2012) Characterization, amyloid formation, and immobilization of a novel SGNH hydrolase from Listeria innocua 11262. Int J Biol Macromol 50:103-111
15. Kumar S, Mohan U, Kamble AL, Pawar S, Banerjee UC (2010) Cross-linked enzyme aggregates of recombinant Pseudomonas putida nitrilase for enantioselective nitrile hydrolysis. Bioresour Technol 101:6856-6858
16. Lee LC, Liaw YC, Lee YL, Shaw JF (2007) Enhanced preference for pi-bond containing substrates is correlated to Pro110 in the substrate-binding tunnel of Escherichia coli thioesterase I/protease I/lysophospholipase L(1). Biochim Biophys Acta 1774:959-967
17. Leščić Ašler I, Ivić N, Kovačić F, Schell S, Knorr J, Krauss U, Wilhelm S, Kojić-Prodić B, Jaeger KE (2010) Probing enzyme promiscuity of SGNH hydrolases. ChemBioChem 11:2158-2167
18. Li S, Wilkinson MF (1997) Site-directed mutagenesis: a two-step method using PCR and Dpn1. Biotechniques 23:588-590
19. Lo YC, Lin SC, Shaw JF, Liaw YC (2003) Crystal structure of Escherichia coli thioesterase I/protease I/lysophospholipase L1: consensus sequence blocks constitute the catalytic center of SGNH-hydrolases through a conserved hydrogen bond network. J Mol Biol 330:539-551
20. Mathews I, Soltis M, Saldajeno M, Ganshaw G, Sala R, Weyler W, Cervin MA, Whited G, Bott R (2007) Structure of a novel enzyme that catalyzes acyl transfer to alcohols in aqueous conditions. Biochemistry 46:8969-8979
21. Mølgaard A, Kauppinen S, Larsen S (2000) Rhamnogalacturonan acetylesterase elucidates the structure and function of a new family of hydrolases. Structure 8:373-383
22. Okamura Y, Kimura T, Yokouchi H, Meneses-Osorio M, Katoh M, Matsunaga T, Takeyama H (2010) Isolation and characterization of a GDSL esterase from the metagenome of a marine sponge-associated bacteria. Mar Biotechnol 12:395-402
23. Pilkington SM, Roberts SJ, Meade SJ, Gerrard JA (2010) Amyloid fibrils as a nanoscaffold for enzyme immobilization. Biotechnol Prog 26:93-100
24. Qian Z, Fields CJ, Yu Y, Lutz S (2007) Recent progress in engineering alpha/beta hydrolase-fold family members. Biotechnol J 2:192-200
25. Raynes JK, Pearce FG, Meade SJ, Gerrard JA (2011) Immobilization of organophosphate hydrolase on an amyloid fibril nanoscaffold: towards bioremediation and chemical detoxification. Biotechnol Prog 27:360-367
26. Riedel K, Talker-Huiber D, Givskov M, Schwab H, Eberl L (2003) Identification and characterization of a GDSL esterase gene located proximal to the swr quorum-sensing system of Serratia liquefaciens MG1. Appl Environ Microbiol 69:3901-3910
27. Royer CA (1995) Fluorescence spectroscopy. Methods Mol Biol 40:65-89
28. Sangeetha K, Abraham TE (2008) Preparation and characterization of cross-linked enzyme aggregates (CLEA) of subtilisin for controlled release applications. Int J Biol Macromol 43:314-319
29. Schwede T, Kopp J, Guex N, Peitsch MC (2003) SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res 31:3381-3385
30. Sheldon RA (2007) Cross-linked enzyme aggregates (CLEAs): stable and recyclable biocatalysts. Biochem Soc Trans 35:1583-1587
31. Taboada-Puig R, Junghanns C, Demarche P, Moreira MT, Feijoo G, Lema JM, Agathos SN (2011) Combined cross-linked enzyme aggregates from versatile peroxidase and glucose oxidase: production, partial characterization and application for the elimination of endocrine disruptors. Bioresour Technol 102:6593-6599
32. Volokita M, Rosilio-Brami T, Rivkin N, Zik M (2011) Combining comparative sequence and genomic data to ascertain phylogenetic relationships and explore the evolution of the large GDSL-lipase family in land plants. Mol Biol Evol 28:551-565
33. Wang G, Meng K, Luo H, Wang Y, Huang H, Shi P, Pan X, Yang P, Yao B (2011) Molecular cloning and characterization of a novel SGNH arylesterase from the goat rumen contents. Appl Microbiol Biotechnol 91:1561-1570
34. Wilhelm S, Rosenau F, Kolmar H, Jaeger KE (2011) Autotransporters with GDSL passenger domains: molecular physiology and biotechnological applications. ChemBioChem 12:1476-1485
35. Yoon S, Kim S, Ryu Y, Kim TD (2007) Identification and characterization of a novel (S)-ketoprofen-specific esterase. Int J Biol Macromol 41:1-7