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Volumn 36, Issue 1, 2013, Pages 56-68

Diversity of Bacteria and Archaea from a landfill in Chandigarh, India as revealed by culture-dependent and culture-independent molecular approaches

Author keywords

16S rRNA gene; Archaea; Bacteria; Community; Landfill; Polyphasic

Indexed keywords

AGAR; RNA 16S;

EID: 84874313665     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2012.08.009     Document Type: Article
Times cited : (50)

References (42)
  • 2
    • 0002888557 scopus 로고
    • Bacterial population development and chemical characteristics of refuse decomposition in a simulated sanitary landfill
    • Barlaz M.A., Schaefer D.M., Ham R.K. Bacterial population development and chemical characteristics of refuse decomposition in a simulated sanitary landfill. Appl. Environ. Microbiol. 1989, 55:55-65.
    • (1989) Appl. Environ. Microbiol. , vol.55 , pp. 55-65
    • Barlaz, M.A.1    Schaefer, D.M.2    Ham, R.K.3
  • 3
    • 16544365966 scopus 로고    scopus 로고
    • Identification, detection and spatial resolution of Clostridium populations responsible for cellulose degradation in a methanogenic landfill leachate bioreactor
    • Burrell P.C., O'Sullivan C.O., Song H., Clarke W.P., Blackall L.L. Identification, detection and spatial resolution of Clostridium populations responsible for cellulose degradation in a methanogenic landfill leachate bioreactor. Appl. Environ. Microbiol. 2004, 70:2414-2419.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2414-2419
    • Burrell, P.C.1    O'Sullivan, C.O.2    Song, H.3    Clarke, W.P.4    Blackall, L.L.5
  • 4
    • 0026641201 scopus 로고
    • Characterisation of 10 mesophilic cellulolytic clostridia isolated from a municipal solid waste digester
    • Cailliez C., Benoit L., Thirion J.P., Petitdemange H. Characterisation of 10 mesophilic cellulolytic clostridia isolated from a municipal solid waste digester. Curr. Microbiol. 1992, 25:105-112.
    • (1992) Curr. Microbiol. , vol.25 , pp. 105-112
    • Cailliez, C.1    Benoit, L.2    Thirion, J.P.3    Petitdemange, H.4
  • 5
    • 0037680714 scopus 로고    scopus 로고
    • Archaeal community composition at different depths (up to 30m) of a municipal solid waste landfill in Taiwan as revealed by 16S rDNA cloning analyses
    • Chen A.C., Imachi H., Sekiguchi Y., Ohashi A., Harad H. Archaeal community composition at different depths (up to 30m) of a municipal solid waste landfill in Taiwan as revealed by 16S rDNA cloning analyses. Biotechnol. Lett. 2003, 25:719-724.
    • (2003) Biotechnol. Lett. , vol.25 , pp. 719-724
    • Chen, A.C.1    Imachi, H.2    Sekiguchi, Y.3    Ohashi, A.4    Harad, H.5
  • 6
    • 0141565120 scopus 로고    scopus 로고
    • Molecular detection and direct enumeration of methanogenic Archaea and methanotrophic Bacteria in domestic solid waste landfill soils
    • Chen A.C., Ueda K., Sekiguchi Y., Ohashi A., Harada H. Molecular detection and direct enumeration of methanogenic Archaea and methanotrophic Bacteria in domestic solid waste landfill soils. Biotechnol. Lett. 2003, 25:1563-1569.
    • (2003) Biotechnol. Lett. , vol.25 , pp. 1563-1569
    • Chen, A.C.1    Ueda, K.2    Sekiguchi, Y.3    Ohashi, A.4    Harada, H.5
  • 7
    • 0038909825 scopus 로고
    • Microorganisms in household refuse and seepage water from sanitary landfills
    • Cook H.A., Cromwell D.L., Wilson H.A. Microorganisms in household refuse and seepage water from sanitary landfills. Proc. W. Vir. Acad. Sci. 1967, 39:107-114.
    • (1967) Proc. W. Vir. Acad. Sci. , vol.39 , pp. 107-114
    • Cook, H.A.1    Cromwell, D.L.2    Wilson, H.A.3
  • 8
    • 0033909552 scopus 로고    scopus 로고
    • Development of oligonucleotide probes and PCR primers for detecting phylogenetic subgroups of sulfate-reducing bacteria
    • Daly K., Sharp R.J., McCarthy A.J. Development of oligonucleotide probes and PCR primers for detecting phylogenetic subgroups of sulfate-reducing bacteria. Microbiology 2000, 146:1693-1705.
    • (2000) Microbiology , vol.146 , pp. 1693-1705
    • Daly, K.1    Sharp, R.J.2    McCarthy, A.J.3
  • 9
    • 0032189023 scopus 로고    scopus 로고
    • Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
    • Dojka M.A., Hugenholtz P., Haack S.K., Pace N.R. Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl. Environ. Microbiol. 1998, 64:3869-3877.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3869-3877
    • Dojka, M.A.1    Hugenholtz, P.2    Haack, S.K.3    Pace, N.R.4
  • 10
    • 35148864456 scopus 로고    scopus 로고
    • Chattopadhyay Bacterial diversity of East Calcutta wetland area: possible identification of potential bacterial population of different biotechnological uses
    • Ghosh A., Maity B., Chakrabarti K., Chattopadhyay Bacterial diversity of East Calcutta wetland area: possible identification of potential bacterial population of different biotechnological uses. Microb. Ecol. 2007, 54:452-459.
    • (2007) Microb. Ecol. , vol.54 , pp. 452-459
    • Ghosh, A.1    Maity, B.2    Chakrabarti, K.3
  • 11
    • 0027314639 scopus 로고
    • Environmental factors influencing methanogenesis from refuse in landfill samples
    • Gurijala K.R., Sulfita J.M. Environmental factors influencing methanogenesis from refuse in landfill samples. Environ. Sci. Technol. 1993, 27:1176-1181.
    • (1993) Environ. Sci. Technol. , vol.27 , pp. 1176-1181
    • Gurijala, K.R.1    Sulfita, J.M.2
  • 12
    • 0242285526 scopus 로고    scopus 로고
    • Characterization of methanogenic Archaea in the leachate of a closed municipal solid waste landfill
    • Huang L.N., Chen Y.Q., Zhou H., Luo S., Lan C.Y., Qu L.H. Characterization of methanogenic Archaea in the leachate of a closed municipal solid waste landfill. FEMS Microbiol. Ecol. 2003, 46:171-177.
    • (2003) FEMS Microbiol. Ecol. , vol.46 , pp. 171-177
    • Huang, L.N.1    Chen, Y.Q.2    Zhou, H.3    Luo, S.4    Lan, C.Y.5    Qu, L.H.6
  • 13
    • 0037057122 scopus 로고    scopus 로고
    • Diversity and structure of the archaeal community in the leachate of a full-scale recirculating landfill, as examined by direct 16S rRNA gene sequence retrieval
    • Huang L.N., Zhou H., Chen Y.Q., Luo S., Lan C.Y., Qu L.H. Diversity and structure of the archaeal community in the leachate of a full-scale recirculating landfill, as examined by direct 16S rRNA gene sequence retrieval. FEMS Microbiol. Lett. 2002, 214:235-240.
    • (2002) FEMS Microbiol. Lett. , vol.214 , pp. 235-240
    • Huang, L.N.1    Zhou, H.2    Chen, Y.Q.3    Luo, S.4    Lan, C.Y.5    Qu, L.H.6
  • 14
    • 11144254515 scopus 로고    scopus 로고
    • Molecular phylogenetic diversity of bacteria associated with the leachate of a closed municipal solid waste landfill
    • Huang L.N., Zhu S., Zhou H., Qu L.H. Molecular phylogenetic diversity of bacteria associated with the leachate of a closed municipal solid waste landfill. FEMS Microbiol. Lett. 2005, 242:297-303.
    • (2005) FEMS Microbiol. Lett. , vol.242 , pp. 297-303
    • Huang, L.N.1    Zhu, S.2    Zhou, H.3    Qu, L.H.4
  • 15
    • 8144228571 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacteria in the leachate of a full-scale recirculating landfill
    • Huang L.N., Zhou H., Zhu S., Qu L.H. Phylogenetic diversity of bacteria in the leachate of a full-scale recirculating landfill. FEMS Microbiol. Ecol. 2004, 50:175-183.
    • (2004) FEMS Microbiol. Ecol. , vol.50 , pp. 175-183
    • Huang, L.N.1    Zhou, H.2    Zhu, S.3    Qu, L.H.4
  • 16
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Academic Press, New York
    • Jukes T.H., Cantor C.R. Evolution of protein molecules. Mammalian Protein Metabolism 1969, vol. 3:21-132. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 17
    • 67651085544 scopus 로고    scopus 로고
    • Paenisporosarcina quisquiliarum gen. nov., sp. nov., and reclassification of Sporosarcina macmurdoensis as Paenisporosarcina macmurdoensis comb. nov
    • Krishnamurthi S., Bhattacharya A., Mayilraj S., Saha P., Schumann P., Chakrabarti T. Paenisporosarcina quisquiliarum gen. nov., sp. nov., and reclassification of Sporosarcina macmurdoensis as Paenisporosarcina macmurdoensis comb. nov. Int. J. Syst. Evol. Microbiol. 2009, 59:1364-1370.
    • (2009) Int. J. Syst. Evol. Microbiol. , vol.59 , pp. 1364-1370
    • Krishnamurthi, S.1    Bhattacharya, A.2    Mayilraj, S.3    Saha, P.4    Schumann, P.5    Chakrabarti, T.6
  • 19
    • 55849124724 scopus 로고    scopus 로고
    • Proposal for transfer of Pelagibacillus goriensis Kim et al. 2007 to the genus Terribacillus as Terribacillus goriensis comb. nov.
    • Krishnamurthi S., Chakrabarti T. Proposal for transfer of Pelagibacillus goriensis Kim et al. 2007 to the genus Terribacillus as Terribacillus goriensis comb. nov. Int. J. Syst. Evol. Microbiol. 2008, 58:2287-2291.
    • (2008) Int. J. Syst. Evol. Microbiol. , vol.58 , pp. 2287-2291
    • Krishnamurthi, S.1    Chakrabarti, T.2
  • 20
    • 67649777108 scopus 로고    scopus 로고
    • Re-examination of the taxonomic position of Bacillus silvestris Rheims et al. 1999 and proposal to transfer it to a new genus Solibacillus gen. nov. as Solibacillus silvestris comb. nov.
    • Krishnamurthi S., Chakrabarti T., Stackebrandt E. Re-examination of the taxonomic position of Bacillus silvestris Rheims et al. 1999 and proposal to transfer it to a new genus Solibacillus gen. nov. as Solibacillus silvestris comb. nov. Int. J. Syst. Evol. Microbiol. 2009, 59:1054-1058.
    • (2009) Int. J. Syst. Evol. Microbiol. , vol.59 , pp. 1054-1058
    • Krishnamurthi, S.1    Chakrabarti, T.2    Stackebrandt, E.3
  • 21
    • 78249257743 scopus 로고    scopus 로고
    • Psychrobacillus gen. nov. and proposal for reclassification of Bacillus insolitus Larkin & Stokes, 1967, B. psychrotolerans Abd-El Rahman et al., 2002 and B. psychrodurans Abd-El Rahman et al., 2002 as Psychrobacillus insolitus comb. nov., Psychrobacillus psychrotolerans comb. nov. and Psychrobacillus psychrodurans comb. nov.
    • Krishnamurthi S., Ruckmani A., Pukall R., Chakrabarti T. Psychrobacillus gen. nov. and proposal for reclassification of Bacillus insolitus Larkin & Stokes, 1967, B. psychrotolerans Abd-El Rahman et al., 2002 and B. psychrodurans Abd-El Rahman et al., 2002 as Psychrobacillus insolitus comb. nov., Psychrobacillus psychrotolerans comb. nov. and Psychrobacillus psychrodurans comb. nov. Syst. Appl. Microbiol. 2010, 33:367-373.
    • (2010) Syst. Appl. Microbiol. , vol.33 , pp. 367-373
    • Krishnamurthi, S.1    Ruckmani, A.2    Pukall, R.3    Chakrabarti, T.4
  • 22
    • 0030844395 scopus 로고    scopus 로고
    • Isolation and characterization of refuse methanogens
    • Ladapo J.A., Barlaz M.A. Isolation and characterization of refuse methanogens. J. Appl. Microbiol. 1997, 82:751-758.
    • (1997) J. Appl. Microbiol. , vol.82 , pp. 751-758
    • Ladapo, J.A.1    Barlaz, M.A.2
  • 24
    • 63849266008 scopus 로고    scopus 로고
    • Insight into networks of functional microbes catalysing methanization of cellulose under mesophilic conditions
    • Li T., Mazeas L., Sghir A., Leblon G., Bouchez T. Insight into networks of functional microbes catalysing methanization of cellulose under mesophilic conditions. Environ. Microbiol. 2009, 11:889-904.
    • (2009) Environ. Microbiol. , vol.11 , pp. 889-904
    • Li, T.1    Mazeas, L.2    Sghir, A.3    Leblon, G.4    Bouchez, T.5
  • 25
    • 0031937375 scopus 로고    scopus 로고
    • Design and evaluation of useful genes coding for bacterial 16S rRNA bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA
    • Marchesi J.R., Sato T., Weightman A.J., Martin T.A., Fry J.C., Hiom S.J., Wade W.G. Design and evaluation of useful genes coding for bacterial 16S rRNA bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl. Environ. Microbiol. 1998, 64:795-799.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 795-799
    • Marchesi, J.R.1    Sato, T.2    Weightman, A.J.3    Martin, T.A.4    Fry, J.C.5    Hiom, S.J.6    Wade, W.G.7
  • 26
    • 0242584879 scopus 로고    scopus 로고
    • Quantification and diversity of the archaeal community in a landfill site
    • Mori K., Sparling R., Hatsu M., Takamizawa K. Quantification and diversity of the archaeal community in a landfill site. Can. J. Microbiol. 2003, 49:28-36.
    • (2003) Can. J. Microbiol. , vol.49 , pp. 28-36
    • Mori, K.1    Sparling, R.2    Hatsu, M.3    Takamizawa, K.4
  • 27
    • 0027465207 scopus 로고
    • Enumeration of fermentative and hydrolytic micro-organisms from three sanitary landfills
    • Palmisano A.C., Maruscik D.A., Schwab B.S. Enumeration of fermentative and hydrolytic micro-organisms from three sanitary landfills. J. Gen. Microbiol. 1993, 139:387-391.
    • (1993) J. Gen. Microbiol. , vol.139 , pp. 387-391
    • Palmisano, A.C.1    Maruscik, D.A.2    Schwab, B.S.3
  • 29
    • 0024553747 scopus 로고
    • Rapid extraction of bacterial 355 genomic DNA with guanidium thiocyanate
    • Pitcher D.G., Saunders N.A., Owen R.J. Rapid extraction of bacterial 355 genomic DNA with guanidium thiocyanate. Lett. Appl. Microbiol. 1989, 8:151-156.
    • (1989) Lett. Appl. Microbiol. , vol.8 , pp. 151-156
    • Pitcher, D.G.1    Saunders, N.A.2    Owen, R.J.3
  • 31
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 32
    • 0000612080 scopus 로고
    • Phenotypic characterization
    • American Society for Microbiology, Washington, DC, P. Gerhard, G.E. Murray, W.A. Wood, N.R. Krieg (Eds.)
    • Smibert R.M., Krieg N.R. Phenotypic characterization. Methods for General and Molecular Bacteriology 1994, 607-654. American Society for Microbiology, Washington, DC. P. Gerhard, G.E. Murray, W.A. Wood, N.R. Krieg (Eds.).
    • (1994) Methods for General and Molecular Bacteriology , pp. 607-654
    • Smibert, R.M.1    Krieg, N.R.2
  • 33
    • 0019944122 scopus 로고
    • Maintenance of laboratory strains of obligately anaerobic rumen bacteria
    • Teather R.M. Maintenance of laboratory strains of obligately anaerobic rumen bacteria. Appl. Environ. Microbiol. 1982, 44:499-501.
    • (1982) Appl. Environ. Microbiol. , vol.44 , pp. 499-501
    • Teather, R.M.1
  • 34
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 35
    • 0242407132 scopus 로고    scopus 로고
    • Characterization of methanogenic and methanotrophic assemblages in landfill samples
    • Uz I., Rasche M.E., Townsend T., Ogram A.V., Lindner A.S. Characterization of methanogenic and methanotrophic assemblages in landfill samples. Proc. Biol. Sci. 2003, 270(Suppl. 2):S202-S205.
    • (2003) Proc. Biol. Sci. , vol.270 , Issue.SUPPL. 2
    • Uz, I.1    Rasche, M.E.2    Townsend, T.3    Ogram, A.V.4    Lindner, A.S.5
  • 36
    • 0030965346 scopus 로고    scopus 로고
    • Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites
    • Van de Peer Y., De Wachter R. Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites. Comput. Appl. Biosci. 1997, 13:227-230.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 227-230
    • Van de Peer, Y.1    De Wachter, R.2
  • 37
    • 0036204961 scopus 로고    scopus 로고
    • Molecular biological detection and characterisation of Clostridium populations in municipal landfill sites
    • Van Dyke M.I., McCarthy A.J. Molecular biological detection and characterisation of Clostridium populations in municipal landfill sites. Appl. Environ. Microbiol. 2002, 68:2049-2053.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2049-2053
    • Van Dyke, M.I.1    McCarthy, A.J.2
  • 39
    • 54349124512 scopus 로고    scopus 로고
    • Diversity of the resident microbiota in a thermophilic municipal biogas plant
    • Weiss A., Jérôme V., Freitag R., Mayer H.K. Diversity of the resident microbiota in a thermophilic municipal biogas plant. Appl. Microbiol. Biotechnol. 2008, 81:163-173.
    • (2008) Appl. Microbiol. Biotechnol. , vol.81 , pp. 163-173
    • Weiss, A.1    Jérôme, V.2    Freitag, R.3    Mayer, H.K.4
  • 41
    • 29144504177 scopus 로고    scopus 로고
    • At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies
    • Ashelford K.E., Chuzhanova N.A., Fry J.C., Jones A.J., Weightman A.J. At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Appl. Environ. Microbiol. 2005, 71:7724-7736.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 7724-7736
    • Ashelford, K.E.1    Chuzhanova, N.A.2    Fry, J.C.3    Jones, A.J.4    Weightman, A.J.5
  • 42
    • 33748799671 scopus 로고    scopus 로고
    • New Screening Software Shows that Most Recent Large 16S rRNA Gene Clone Libraries Contain Chimeras
    • Ashelford K.E., Chuzhanova N.A., Fry J.C., Jones A.J., Weightman A.J. New Screening Software Shows that Most Recent Large 16S rRNA Gene Clone Libraries Contain Chimeras. Appl Environ. Microbiol. 2006, 72:5734-5741.
    • (2006) Appl Environ. Microbiol. , vol.72 , pp. 5734-5741
    • Ashelford, K.E.1    Chuzhanova, N.A.2    Fry, J.C.3    Jones, A.J.4    Weightman, A.J.5


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