Microbacterium immunditiarum sp. nov., an actinobacterium isolated from landfill surface soil, and emended description of the genus microbacterium

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 9, 2012, Pages 2187-2193

  Krishnamurthi, Srinivasan ^a,b   Bhattacharya, A ^a,e   Schumann, P ^c   Dastager, Syed G ^b   Tang, Shu Kun ^d   Li, Wen Jun ^d   Chakrabarti, T ^a,f  

^a INSTITUTE OF MICROBIAL TECHNOLOGY   (India)

^b NATIONAL INSTITUTE OF OCEANOGRAPHY   (India)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^d YUNNAN UNIVERSITY   (China)

^e India Habitat Centre   (India)

^f NATIONAL CENTRE FOR CELL SCIENCE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CARDIOLIPIN; CATALASE; FATTY ACID ESTER; GLYCOLIPID; LYSINE; MURAMIC ACID; ORNITHINE; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; POLYMER; RNA 16S; SUGAR;

ACTINOBACTERIA; ARTICLE; BACTERIAL CELL WALL; BACTERIAL STRAIN; BACTERIUM ISOLATION; CELL MEMBRANE; DNA DNA HYBRIDIZATION; GC RICH SEQUENCE; GENUS; GRAM POSITIVE BACTERIUM; HYDROLYSIS; LANDFILL; LIPID ANALYSIS; MICROBACTERIUM IMMUNDITIARUM; MICROBACTERIUM ULMI; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; PHENOTYPE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SURFACE SOIL; UNINDEXED SEQUENCE;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PEPTIDOGLYCAN; PHOSPHOLIPIDS; PHYLOGENY; REFUSE DISPOSAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); MICROBACTERIUM; MICROBACTERIUM ULMI; POSIBACTERIA;

EID: 84866081557     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.033373-0     Document Type: Article

References (32)

1. Collins, M. D. & Bradbury, J. F. (1992). The genera Agromyces, Aureobacterium, Clavibacter, Curtobacterium, and Microbacterium. In The Prokaryotes, pp. 1355-1368. Edited by A. Balows, H. G. Truper, M. Dworkin, W. Harder & K. H. Schleifer. Berlin: Springer.
2. Collins, M. D., Jones, D. & Kroppenstedt, R. M. (1983). Reclassification of Brevibacterium imperiale (Steinhaus) and "Corynebacterium laevaniformans" (Dias and Bhat) in a redefined genus Microbacterium (Orla-Jensen), as Microbacterium imperiale comb. nov. and Microbacterium laevaniformans nom. rev.; comb. nov. Syst Appl Microbiol 4, 65-78.
3. Evtushenko, L. I. & Takeuchi, M. (2006). The family Microbacteriaceae. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 3, pp. 1020-1098. Edited by M. Dworkin, S. Falkow, E. Roenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
4. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
5. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
6. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
7. Komagata, K. & Suzuki, K. (1987). Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
8. Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
9. MacKenzie, S. L. (1987). Gas chromatographic analysis of amino acids as the N-heptafluorobutyryl isobutyl esters. J Assoc Off Anal Chem 70, 151-160.
10. Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbance temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B, 195-206.
11. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
12. Minnikin, D. E., Patel, V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104-117.
13. Orla-Jensen, S. (1919). The Lactic Acid Bacteria. Copenhagen: Høst and Son.
14. Pandey, K. K., Mayilraj, S. & Chakrabarti, T. (2002). Pseudomonas indica sp. nov., a novel butane-utilizing species. Int J Syst Evol Microbiol 52, 1559-1567.
15. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
16. Reddy, G. S. N., Aggarwal, R. K., Matsumoto, G. I. & Shivaji, S. (2000). Arthrobacter flavus sp. nov., a psychrophilic bacterium isolated from a pond in McMurdo Dry Valley, Antarctica. Int J Syst Evol Microbiol 50, 1553-1561.
17. Richert, K., Brambilla, E. & Stackebrandt, E. (2007). The phylogenetic significance of peptidoglycan types: molecular analysis of the genera Microbacterium and Aureobacterium based upon sequence comparison of gyrB, rpoB, recA and ppk and 16SrRNA genes. Syst Appl Microbiol 30, 102-108.
18. Rivas, R., Trujillo, M. E., Sánchez, M., Mateos, P. F., Martínez-Molina, E. & Velázquez, E. (2004). Microbacterium ulmi sp. nov., a xylanolytic, phosphate-solubilizing bacteriumisolated fromsawdust of Ulmus nigra. Int J Syst Evol Microbiol 54, 513-517.
19. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
20. Schleifer, K. H. (1985). Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18, 123-156.
21. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
22. Schumann, P., Rainey, F. A., Burghardt, J., Stackebrandt, E. & Weiss, N. (1999). Reclassification of Brevibacterium oxydans (Chatelain and Second 1966) as Microbacterium oxydans comb. nov. Int J Syst Bacteriol 49, 175-177.
23. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhard, G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
24. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
25. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
26. Takeuchi, M. & Hatano, K. (1998a). Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. Int J Syst Bacteriol 48, 739-747.
27. Takeuchi, M. & Hatano, K. (1998b). Proposal of six new species in the genus Microbacterium and transfer of Flavobacterium marinotypicum ZoBell and Upham to the genus Microbacterium as Microbacterium maritypicum comb. nov. Int J Syst Bacteriol 48, 973-982.
28. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
29. Tourova, T. P. & Antonov, A. S. (1988). Identification of microorganisms by rapid DNA-DNA hybridization. Methods Microbiol 19, 333-355.
30. Uchida, K., Kudo, T., Suzuki, K. I. & Nakase, T. (1999). A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J Gen Appl Microbiol 45, 49-56.
31. Van de Peer, Y. & De Wachter, R. (1997). Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites. Comput Appl Biosci 13, 227-230.
32. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.