-
1
-
-
0025294528
-
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
-
Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R. Stahl, D.A. (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56 : 1919 1925.
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 1919-1925
-
-
Amann, R.I.1
Binder, B.J.2
Olson, R.J.3
Chisholm, S.W.4
Devereux, R.5
Stahl, D.A.6
-
2
-
-
0034704324
-
Genomic exploration of the hemiascomycetous yeasts: 2. Data generation and processing
-
Artiguenave, F., Wincker, P., Brottier, P., Duprat, S., Jovelin, F., Scarpelli, C., et al. (2000) Genomic exploration of the hemiascomycetous yeasts: 2. Data generation and processing. FEBS Lett 487 : 13 16.
-
(2000)
FEBS Lett
, vol.487
, pp. 13-16
-
-
Artiguenave, F.1
Wincker, P.2
Brottier, P.3
Duprat, S.4
Jovelin, F.5
Scarpelli, C.6
-
3
-
-
0002888557
-
Bacterial population development and chemical characteristics of refuse decomposition in a simulated sanitary landfill
-
Barlaz, M., Schaefer, D. Ham, R. (1989) Bacterial population development and chemical characteristics of refuse decomposition in a simulated sanitary landfill. Appl Environ Microbiol 55 : 55 65.
-
(1989)
Appl Environ Microbiol
, vol.55
, pp. 55-65
-
-
Barlaz, M.1
Schaefer, D.2
Ham, R.3
-
4
-
-
34249949390
-
The potential of cellulases and cellulosomes for cellulosic waste management
-
Bayer, E.A., Lamed, R. Himmel, M.E. (2007) The potential of cellulases and cellulosomes for cellulosic waste management. Curr Opin Biotechnol 18 : 237 245.
-
(2007)
Curr Opin Biotechnol
, vol.18
, pp. 237-245
-
-
Bayer, E.A.1
Lamed, R.2
Himmel, M.E.3
-
5
-
-
0344406194
-
In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes
-
Behrens, S., Ruhland, C., Inacio, J., Huber, H., Fonseca, A., Spencer-Martins, I., et al. (2003) In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes. Appl Environ Microbiol 69 : 1748 1758.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 1748-1758
-
-
Behrens, S.1
Ruhland, C.2
Inacio, J.3
Huber, H.4
Fonseca, A.5
Spencer-Martins, I.6
-
6
-
-
16544365966
-
Identification, detection, and spatial resolution of Clostridium populations responsible for cellulose degradation in a methanogenic landfill leachate bioreactor
-
Burrell, P.C., O'Sullivan, C., Song, H., Clarke, W.P. Blackall, L.L. (2004) Identification, detection, and spatial resolution of Clostridium populations responsible for cellulose degradation in a methanogenic landfill leachate bioreactor. Appl Environ Microbiol 70 : 2414 2419.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 2414-2419
-
-
Burrell, P.C.1
O'Sullivan, C.2
Song, H.3
Clarke, W.P.4
Blackall, L.L.5
-
7
-
-
9744270661
-
Acetanaerobacterium elongatum gen. nov., sp. nov., from paper mill waste water
-
Chen, S. Dong, X. (2004) Acetanaerobacterium elongatum gen. nov., sp. nov., from paper mill waste water. Int J Syst Evol Microbiol 54 : 2257 2262.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 2257-2262
-
-
Chen, S.1
Dong, X.2
-
8
-
-
33846072878
-
The ribosomal database project (RDP-II): Introducing myRDP space and quality controlled public data
-
Cole, J.R., Chai, B., Farris, R.J., Wang, Q., Kulam-Syed-Mohideen, A.S., McGarrell, D.M., et al. (2007) The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res 35 : D169 D172.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Cole, J.R.1
Chai, B.2
Farris, R.J.3
Wang, Q.4
Kulam-Syed-Mohideen, A.S.5
McGarrell, D.M.6
-
9
-
-
0034123182
-
Cellulose catabolism by Clostridium cellulolyticum growing in batch culture on defined medium
-
Desvaux, M., Guedon, E. Petitdemange, H. (2000) Cellulose catabolism by Clostridium cellulolyticum growing in batch culture on defined medium. Appl Environ Microbiol 66 : 2461 2470.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 2461-2470
-
-
Desvaux, M.1
Guedon, E.2
Petitdemange, H.3
-
10
-
-
19144371340
-
Retrieval of first genome data for rice cluster i methanogens by a combination of cultivation and molecular techniques
-
Erkel, C., Kemnitz, D., Kube, M., Ricke, P., Chin, K.J., Dedysh, S., et al. (2005) Retrieval of first genome data for rice cluster I methanogens by a combination of cultivation and molecular techniques. FEMS Microbiol Ecol 53 : 187 204.
-
(2005)
FEMS Microbiol Ecol
, vol.53
, pp. 187-204
-
-
Erkel, C.1
Kemnitz, D.2
Kube, M.3
Ricke, P.4
Chin, K.J.5
Dedysh, S.6
-
12
-
-
0033867966
-
Taxonomic phylogenetic and ecological diversity of methanogenic Archaea
-
Garcia, J.L., Patel, B.K.C. Ollivier, B. (2000) Taxonomic phylogenetic and ecological diversity of methanogenic Archaea. Anaerobe 6 : 205 226.
-
(2000)
Anaerobe
, vol.6
, pp. 205-226
-
-
Garcia, J.L.1
Patel, B.K.C.2
Ollivier, B.3
-
13
-
-
0032912348
-
Carbon and electron flow in Clostridium cellulolyticum grown in chemostat culture on synthetic medium
-
Guedon, E., Payot, S., Desvaux, M. Petitdemange, H. (1999) Carbon and electron flow in Clostridium cellulolyticum grown in chemostat culture on synthetic medium. J Bacteriol 181 : 3262 3269.
-
(1999)
J Bacteriol
, vol.181
, pp. 3262-3269
-
-
Guedon, E.1
Payot, S.2
Desvaux, M.3
Petitdemange, H.4
-
14
-
-
33846990441
-
Identification of cellulolytic bacteria in soil by stable isotope probing
-
Haichar, F.E.Z., Achouak, W., Christen, R., Heulin, T., Marol, C., Marais, M.F., et al. (2007) Identification of cellulolytic bacteria in soil by stable isotope probing. Environ Microbiol 9 : 625 634.
-
(2007)
Environ Microbiol
, vol.9
, pp. 625-634
-
-
Haichar, F.E.Z.1
Achouak, W.2
Christen, R.3
Heulin, T.4
Marol, C.5
Marais, M.F.6
-
15
-
-
33847201486
-
Identification and cultivation of anaerobic, syntrophic long-chain fatty acid-degrading microbes from mesophilic and thermophilic methanogenic sludges
-
Hatamoto, M., Imachi, H., Ohashi, A. Harada, H. (2007) Identification and cultivation of anaerobic, syntrophic long-chain fatty acid-degrading microbes from mesophilic and thermophilic methanogenic sludges. Appl Environ Microbiol 73 : 1332 1340.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1332-1340
-
-
Hatamoto, M.1
Imachi, H.2
Ohashi, A.3
Harada, H.4
-
16
-
-
3843078402
-
GC fractionation enhances microbial community diversity assessment and detection of minority populations of bacteria by denaturing gradient gel electrophoresis
-
Holben, W.E., Feris, K.P., Kettunen, A. Apajalahti, J.H. (2004) GC fractionation enhances microbial community diversity assessment and detection of minority populations of bacteria by denaturing gradient gel electrophoresis. Appl Environ Microbiol 70 : 2263 2270.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 2263-2270
-
-
Holben, W.E.1
Feris, K.P.2
Kettunen, A.3
Apajalahti, J.H.4
-
17
-
-
8144228571
-
Phylogenetic diversity of bacteria in the leachate of a full-scale recirculating landfill
-
Huang, L., Zhou, H., Zhu, S. Qu, L. (2004) Phylogenetic diversity of bacteria in the leachate of a full-scale recirculating landfill. FEMS Microbiol Ecol 50 : 175 183.
-
(2004)
FEMS Microbiol Ecol
, vol.50
, pp. 175-183
-
-
Huang, L.1
Zhou, H.2
Zhu, S.3
Qu, L.4
-
18
-
-
11144254515
-
Molecular phylogenetic diversity of bacteria associated with the leachate of a closed municipal solid waste landfill
-
Huang, L.N., Zhu, S., Zhou, H. Qu, L.H. (2005) Molecular phylogenetic diversity of bacteria associated with the leachate of a closed municipal solid waste landfill. FEMS Microbiol Lett 242 : 297 303.
-
(2005)
FEMS Microbiol Lett
, vol.242
, pp. 297-303
-
-
Huang, L.N.1
Zhu, S.2
Zhou, H.3
Qu, L.H.4
-
19
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar, S., Tamura, K. Nei, M. (2004) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5 : 150 163.
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
20
-
-
0034828971
-
Cellulolytic activity in leachate during leach-bed anaerobic digestion of municipal solid waste
-
Lai, T.E., Nopharatana, A., Pullammanappallil, P.C. Clarke, W.P. (2001) Cellulolytic activity in leachate during leach-bed anaerobic digestion of municipal solid waste. Bioresour Technol 80 : 205 210.
-
(2001)
Bioresour Technol
, vol.80
, pp. 205-210
-
-
Lai, T.E.1
Nopharatana, A.2
Pullammanappallil, P.C.3
Clarke, W.P.4
-
21
-
-
33745150003
-
Methanogenic diversity and activity in municipal solid waste landfill leachates
-
Laloui-Carpentier, W., Li, T., Vigneron, V., Mazeas, L. Bouchez, T. (2006) Methanogenic diversity and activity in municipal solid waste landfill leachates. Antonie Van Leeuwenhoek 89 : 423 434.
-
(2006)
Antonie Van Leeuwenhoek
, vol.89
, pp. 423-434
-
-
Laloui-Carpentier, W.1
Li, T.2
Vigneron, V.3
Mazeas, L.4
Bouchez, T.5
-
22
-
-
38549118279
-
Simultaneous analysis of microbial identity and function using NanoSIMS
-
Li, T., Wu, T.-D., Mazeas, L., Toffin, L., Guerquin-Kern, J.-L., Leblon, G. Bouchez, T. (2008) Simultaneous analysis of microbial identity and function using NanoSIMS. Environ Microbiol 10 : 580 588.
-
(2008)
Environ Microbiol
, vol.10
, pp. 580-588
-
-
Li, T.1
Wu, T.-D.2
Mazeas, L.3
Toffin, L.4
Guerquin-Kern, J.-L.5
Leblon, G.6
Bouchez, T.7
-
23
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32 : 1363 1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar6
-
24
-
-
0842266326
-
Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients
-
Lueders, T., Manefield, M. Friedrich, M.W. (2004) Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients. Environ Microbiol 6 : 73 78.
-
(2004)
Environ Microbiol
, vol.6
, pp. 73-78
-
-
Lueders, T.1
Manefield, M.2
Friedrich, M.W.3
-
25
-
-
0036714783
-
Microbial cellulose utilization: Fundamentals and biotechnology
-
Lynd, L.R., Weimer, P.J., van Zyl, W.H. Pretorius, I.S. (2002) Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol Rev 66 : 506 577.
-
(2002)
Microbiol Mol Biol Rev
, vol.66
, pp. 506-577
-
-
Lynd, L.R.1
Weimer, P.J.2
Van Zyl, W.H.3
Pretorius, I.S.4
-
26
-
-
0027068041
-
Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions
-
Manz, W., Amann, R., Ludwig, W., Wagner, M. Schleifer, K.H. (1992) Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst Appl Microbiol 15 : 593 600.
-
(1992)
Syst Appl Microbiol
, vol.15
, pp. 593-600
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Wagner, M.4
Schleifer, K.H.5
-
27
-
-
0037560738
-
Parameters of nucleic acid hybridization experiments
-
In. Akkermans, A.D. van Elsas, J.D. de Bruijn, F.J. (eds). Dordrecht, The Netherlands. Kluwer Academic Publishers. pp.
-
Nakatsu, C.H. Forney, L.J. (1996) Parameters of nucleic acid hybridization experiments. In Molecular Microbial Ecology Manual. Akkermans, A.D., van Elsas, J.D. de Bruijn, F.J. (eds). Dordrecht, The Netherlands : Kluwer Academic Publishers, pp. 1 12.
-
(1996)
Molecular Microbial Ecology Manual.
, pp. 1-12
-
-
Nakatsu, C.H.1
Forney, L.J.2
-
28
-
-
0019987405
-
Differential metabolism of cellobiose and glucose by Clostridium thermocellum and Clostridium thermohydrosulfuricum
-
Ng, T.K. Zeikus, J.G. (1982) Differential metabolism of cellobiose and glucose by Clostridium thermocellum and Clostridium thermohydrosulfuricum. J Bacteriol 150 : 1391 1399.
-
(1982)
J Bacteriol
, vol.150
, pp. 1391-1399
-
-
Ng, T.K.1
Zeikus, J.G.2
-
29
-
-
33544474261
-
Structure of a cellulose degrading bacterial community during anaerobic digestion
-
O'Sullivan, C.A., Burrell, P.C., Clarke, W.P. Blackall, L.L. (2005) Structure of a cellulose degrading bacterial community during anaerobic digestion. Biotechnol Bioeng 92 : 871 878.
-
(2005)
Biotechnol Bioeng
, vol.92
, pp. 871-878
-
-
O'Sullivan, C.A.1
Burrell, P.C.2
Clarke, W.P.3
Blackall, L.L.4
-
30
-
-
0034628432
-
Stable-isotope probing as a tool in microbial ecology
-
Radajewski, S., Ineson, P., Parekh, N.R. Murrell, J.C. (2000) Stable-isotope probing as a tool in microbial ecology. Nature 403 : 646 649.
-
(2000)
Nature
, vol.403
, pp. 646-649
-
-
Radajewski, S.1
Ineson, P.2
Parekh, N.R.3
Murrell, J.C.4
-
31
-
-
0038482074
-
Stable-isotope probing of nucleic acids: A window to the function of uncultured microorganisms
-
Radajewski, S., McDonald, I.R. Murrell, J.C. (2003) Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms. Curr Opin Biotechnol 14 : 296 302.
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 296-302
-
-
Radajewski, S.1
McDonald, I.R.2
Murrell, J.C.3
-
32
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss, P.D. Handelsman, J. (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71 : 1501 1506.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
33
-
-
19544392542
-
1996 is a later synonym of Methanoculleus thermophilus (Rivard and Smith 1982) Maestrojuan
-
Methanogenium frittonii Harris*et al. et al. 1990.
-
Spring, S., Schumann, P., Sproer, C. (2005) Methanogenium frittonii Harris et al. 1996 is a later synonym of Methanoculleus thermophilus (Rivard and Smith 1982) Maestrojuan et al. 1990. Int J Syst Evol Microbiol 55 : 1097 1099.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 1097-1099
-
-
Spring, S.1
Schumann, P.2
Sproer, C.3
-
34
-
-
0032755259
-
Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
-
Suau, A., Bonnet, R., Sutren, M., Godon, J.J., Gibson, G.R., Collins, M.D. Dore, J. (1999) Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol 65 : 4799 4807.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4799-4807
-
-
Suau, A.1
Bonnet, R.2
Sutren, M.3
Godon, J.J.4
Gibson, G.R.5
Collins, M.D.6
Dore, J.7
-
35
-
-
2542486472
-
The effects of micro-aeration on the phylogenetic diversity of microorganisms in a thermophilic anaerobic municipal solid-waste digester
-
Tang, Y., Shigematsu, T., Ikbal, Morimura, S. Kida, K. (2004) The effects of micro-aeration on the phylogenetic diversity of microorganisms in a thermophilic anaerobic municipal solid-waste digester. Water Res 38 : 2537 2550.
-
(2004)
Water Res
, vol.38
, pp. 2537-2550
-
-
Tang, Y.1
Shigematsu, T.2
Ikbal Morimura, S.3
Kida, K.4
-
36
-
-
17044419261
-
Microbial community analysis of mesophilic anaerobic protein degradation process using bovine serum albumin (BSA)-fed continuous cultivation
-
Tang, Y., Shigematsu, T., Morimura, S. Kida, K. (2005) Microbial community analysis of mesophilic anaerobic protein degradation process using bovine serum albumin (BSA)-fed continuous cultivation. J Biosci Bioeng 99 : 150 164.
-
(2005)
J Biosci Bioeng
, vol.99
, pp. 150-164
-
-
Tang, Y.1
Shigematsu, T.2
Morimura, S.3
Kida, K.4
-
37
-
-
0034764035
-
Microbial community in anaerobic hydrogen-producing microflora enriched from sludge compost
-
Ueno, Y., Haruta, S., Ishii, M. Igarashi, Y. (2001) Microbial community in anaerobic hydrogen-producing microflora enriched from sludge compost. Appl Microbiol Biotechnol 57 : 555 562.
-
(2001)
Appl Microbiol Biotechnol
, vol.57
, pp. 555-562
-
-
Ueno, Y.1
Haruta, S.2
Ishii, M.3
Igarashi, Y.4
-
38
-
-
0036204961
-
Molecular biological detection and characterization of Clostridium populations in municipal landfill sites
-
Van Dyke, M.I. McCarthy, A.J. (2002) Molecular biological detection and characterization of Clostridium populations in municipal landfill sites. Appl Environ Microbiol 68 : 2049 2053.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 2049-2053
-
-
Van Dyke, M.I.1
McCarthy, A.J.2
-
39
-
-
25144454366
-
Leachate pre-treatment strategies before recirculation in landfill bioreactors
-
Vigneron, V., Bouchez, T., Bureau, C., Mailly, N., Mazeas, L., Duquennoi, C., et al. (2005) Leachate pre-treatment strategies before recirculation in landfill bioreactors. Water Sci Technol 52 : 289 297.
-
(2005)
Water Sci Technol
, vol.52
, pp. 289-297
-
-
Vigneron, V.1
Bouchez, T.2
Bureau, C.3
Mailly, N.4
Mazeas, L.5
Duquennoi, C.6
-
40
-
-
11144320832
-
Regulation of cellulase synthesis in batch and continuous cultures of Clostridium thermocellum
-
Zhang, Y.H. Lynd, L.R. (2005) Regulation of cellulase synthesis in batch and continuous cultures of Clostridium thermocellum. J Bacteriol 187 : 99 106.
-
(2005)
J Bacteriol
, vol.187
, pp. 99-106
-
-
Zhang, Y.H.1
Lynd, L.R.2
|