-
1
-
-
34047111213
-
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
-
Albert, I., Mavrich, T.N., Tomsho, L.P., Qi, J., Zanton, S.J., Schuster, S.C., and Pugh, B.F. (2007) Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature 446: 572-576.
-
(2007)
Nature
, vol.446
, pp. 572-576
-
-
Albert, I.1
Mavrich, T.N.2
Tomsho, L.P.3
Qi, J.4
Zanton, S.J.5
Schuster, S.C.6
Pugh, B.F.7
-
2
-
-
58149178569
-
PlasmoDB: a functional genomic database for malaria parasites
-
Aurrecoechea, C., Brestelli, J., Brunk, B.P., Dommer, J., Fischer, S., Gajria, B., etal. (2009) PlasmoDB: a functional genomic database for malaria parasites. Nucleic Acids Res 37: D539-D543.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Aurrecoechea, C.1
Brestelli, J.2
Brunk, B.P.3
Dommer, J.4
Fischer, S.5
Gajria, B.6
-
3
-
-
0038742727
-
The ins, outs and roundabouts of malaria
-
Bannister, L., and Mitchell, G. (2003) The ins, outs and roundabouts of malaria. Trends Parasitol 19: 209-213.
-
(2003)
Trends Parasitol
, vol.19
, pp. 209-213
-
-
Bannister, L.1
Mitchell, G.2
-
4
-
-
78651238244
-
H2A.Z demarcates intergenic regions of the Plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3
-
Bartfai, R., Hoeijmakers, W.A., Salcedo-Amaya, A.M., Smits, A.H., Janssen-Megens, E., Kaan, A., etal. (2010) H2A.Z demarcates intergenic regions of the Plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3. PLoS Pathog 6: e1001223.
-
(2010)
PLoS Pathog
, vol.6
-
-
Bartfai, R.1
Hoeijmakers, W.A.2
Salcedo-Amaya, A.M.3
Smits, A.H.4
Janssen-Megens, E.5
Kaan, A.6
-
5
-
-
76749100261
-
In silico and biological survey of transcription-associated proteins implicated in the transcriptional machinery during the erythrocytic development of Plasmodium falciparum
-
Bischoff, E., and Vaquero, C. (2010) In silico and biological survey of transcription-associated proteins implicated in the transcriptional machinery during the erythrocytic development of Plasmodium falciparum. BMC Genomics 11: 34.
-
(2010)
BMC Genomics
, vol.11
, pp. 34
-
-
Bischoff, E.1
Vaquero, C.2
-
6
-
-
4243071596
-
The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum
-
Bozdech, Z., Llinas, M., Pulliam, B.L., Wong, E.D., Zhu, J., and DeRisi, J.L. (2003) The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biol 1: E5.
-
(2003)
PLoS Biol
, vol.1
-
-
Bozdech, Z.1
Llinas, M.2
Pulliam, B.L.3
Wong, E.D.4
Zhu, J.5
DeRisi, J.L.6
-
7
-
-
0034928521
-
Histone variants: are they functionally heterogeneous?
-
REVIEWS0006
-
Brown, D.T. (2001) Histone variants: are they functionally heterogeneous? Genome Biol 2: REVIEWS0006.
-
(2001)
Genome Biol
, vol.2
-
-
Brown, D.T.1
-
8
-
-
51449087973
-
Transcriptional control and gene silencing in Plasmodium falciparum
-
Coleman, B.I., and Duraisingh, M.T. (2008) Transcriptional control and gene silencing in Plasmodium falciparum. Cell Microbiol 10: 1935-1946.
-
(2008)
Cell Microbiol
, vol.10
, pp. 1935-1946
-
-
Coleman, B.I.1
Duraisingh, M.T.2
-
9
-
-
3242702590
-
Transfection of the human malaria parasite Plasmodium falciparum
-
Crabb, B.S., Rug, M., Gilberger, T.W., Thompson, J.K., Triglia, T., Maier, A.G., and Cowman, A.F. (2004) Transfection of the human malaria parasite Plasmodium falciparum. Methods Mol Biol 270: 263-276.
-
(2004)
Methods Mol Biol
, vol.270
, pp. 263-276
-
-
Crabb, B.S.1
Rug, M.2
Gilberger, T.W.3
Thompson, J.K.4
Triglia, T.5
Maier, A.G.6
Cowman, A.F.7
-
10
-
-
77956802116
-
Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum
-
Cui, L., and Miao, J. (2010) Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum. Eukaryot Cell 9: 1138-1149.
-
(2010)
Eukaryot Cell
, vol.9
, pp. 1138-1149
-
-
Cui, L.1
Miao, J.2
-
11
-
-
65249174549
-
Epigenetic specification of centromeres
-
Dalal, Y. (2009) Epigenetic specification of centromeres. Biochem Cell Biol 87: 273-282.
-
(2009)
Biochem Cell Biol
, vol.87
, pp. 273-282
-
-
Dalal, Y.1
-
12
-
-
33744735076
-
Toxoplasma gondii has two lineages of histones 2b (H2B) with different expression profiles
-
Dalmasso, M.C., Echeverria, P.C., Zappia, M.P., Hellman, U., Dubremetz, J.F., and Angel, S.O. (2006) Toxoplasma gondii has two lineages of histones 2b (H2B) with different expression profiles. Mol Biochem Parasitol 148: 103-107.
-
(2006)
Mol Biochem Parasitol
, vol.148
, pp. 103-107
-
-
Dalmasso, M.C.1
Echeverria, P.C.2
Zappia, M.P.3
Hellman, U.4
Dubremetz, J.F.5
Angel, S.O.6
-
13
-
-
68949196209
-
Toxoplasma H2A variants reveal novel insights into nucleosome composition and functions for this histone family
-
Dalmasso, M.C., Onyango, D.O., Naguleswaran, A., Sullivan, W.J., and Angel, S.O. (2009) Toxoplasma H2A variants reveal novel insights into nucleosome composition and functions for this histone family. J Mol Biol 392: 33-47.
-
(2009)
J Mol Biol
, vol.392
, pp. 33-47
-
-
Dalmasso, M.C.1
Onyango, D.O.2
Naguleswaran, A.3
Sullivan, W.J.4
Angel, S.O.5
-
14
-
-
79959691342
-
Canonical and variant histones of protozoan parasites
-
Dalmasso, M.C., Sullivan, W.J., Jr, and Angel, S.O. (2011) Canonical and variant histones of protozoan parasites. Front Biosci 17: 2086-2105.
-
(2011)
Front Biosci
, vol.17
, pp. 2086-2105
-
-
Dalmasso, M.C.1
Sullivan Jr., W.J.2
Angel, S.O.3
-
15
-
-
46149107652
-
Specific DNA-binding by apicomplexan AP2 transcription factors
-
De Silva, E.K., Gehrke, A.R., Olszewski, K., Leon, I., Chahal, J.S., Bulyk, M.L., and Llinas, M. (2008) Specific DNA-binding by apicomplexan AP2 transcription factors. Proc Natl Acad Sci USA 105: 8393-8398.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 8393-8398
-
-
De Silva, E.K.1
Gehrke, A.R.2
Olszewski, K.3
Leon, I.4
Chahal, J.S.5
Bulyk, M.L.6
Llinas, M.7
-
16
-
-
85015069067
-
Controlling the double helix
-
Felsenfeld, G., and Groudine, M. (2003) Controlling the double helix. Nature 421: 448-453.
-
(2003)
Nature
, vol.421
, pp. 448-453
-
-
Felsenfeld, G.1
Groudine, M.2
-
17
-
-
70349670574
-
Plasmodium falciparum heterochromatin protein 1 marks genomic loci linked to phenotypic variation of exported virulence factors
-
Flueck, C., Bartfai, R., Volz, J., Niederwieser, I., Salcedo-Amaya, A.M., Alako, B.T., etal. (2009) Plasmodium falciparum heterochromatin protein 1 marks genomic loci linked to phenotypic variation of exported virulence factors. PLoS Pathog 5: e1000569.
-
(2009)
PLoS Pathog
, vol.5
-
-
Flueck, C.1
Bartfai, R.2
Volz, J.3
Niederwieser, I.4
Salcedo-Amaya, A.M.5
Alako, B.T.6
-
18
-
-
77649264247
-
A major role for the Plasmodium falciparum ApiAP2 protein PfSIP2 in chromosome end biology
-
Flueck, C., Bartfai, R., Niederwieser, I., Witmer, K., Alako, B.T., Moes, S., etal. (2010) A major role for the Plasmodium falciparum ApiAP2 protein PfSIP2 in chromosome end biology. PLoS Pathog 6: e1000784.
-
(2010)
PLoS Pathog
, vol.6
-
-
Flueck, C.1
Bartfai, R.2
Niederwieser, I.3
Witmer, K.4
Alako, B.T.5
Moes, S.6
-
19
-
-
0037015614
-
Genome sequence of the human malaria parasite Plasmodium falciparum
-
Gardner, M.J., Hall, N., Fung, E., White, O., Berriman, M., Hyman, R.W., etal. (2002) Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 419: 498-511.
-
(2002)
Nature
, vol.419
, pp. 498-511
-
-
Gardner, M.J.1
Hall, N.2
Fung, E.3
White, O.4
Berriman, M.5
Hyman, R.W.6
-
20
-
-
12344305405
-
PfMyb1, a Plasmodium falciparum transcription factor, is required for intra-erythrocytic growth and controls key genes for cell cycle regulation
-
Gissot, M., Briquet, S., Refour, P., Boschet, C., and Vaquero, C. (2005) PfMyb1, a Plasmodium falciparum transcription factor, is required for intra-erythrocytic growth and controls key genes for cell cycle regulation. J Mol Biol 346: 29-42.
-
(2005)
J Mol Biol
, vol.346
, pp. 29-42
-
-
Gissot, M.1
Briquet, S.2
Refour, P.3
Boschet, C.4
Vaquero, C.5
-
21
-
-
9144264843
-
GeneDB: a resource for prokaryotic and eukaryotic organisms
-
Hertz-Fowler, C., Peacock, C.S., Wood, V., Aslett, M., Kerhornou, A., Mooney, P., etal. (2004) GeneDB: a resource for prokaryotic and eukaryotic organisms. Nucleic Acids Res 32: D339-D343.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Hertz-Fowler, C.1
Peacock, C.S.2
Wood, V.3
Aslett, M.4
Kerhornou, A.5
Mooney, P.6
-
22
-
-
79959882452
-
Linear amplification for deep sequencing
-
Hoeijmakers, W.A., Bartfai, R., Francoijs, K.J., and Stunnenberg, H.G. (2011) Linear amplification for deep sequencing. Nat Protoc 6: 1026-1036.
-
(2011)
Nat Protoc
, vol.6
, pp. 1026-1036
-
-
Hoeijmakers, W.A.1
Bartfai, R.2
Francoijs, K.J.3
Stunnenberg, H.G.4
-
23
-
-
84865313775
-
Plasmodium falciparum centromeres display a unique epigenetic makeup and cluster prior to and during schizogony
-
Hoeijmakers, W.A.M., Flueck, C., Francoijs, K.J., Smits, A.H., Wetzel, J., Volz, J., etal. (2012) Plasmodium falciparum centromeres display a unique epigenetic makeup and cluster prior to and during schizogony. Cell Microbiol 14: 1391-1401.
-
(2012)
Cell Microbiol
, vol.14
, pp. 1391-1401
-
-
Hoeijmakers, W.A.M.1
Flueck, C.2
Francoijs, K.J.3
Smits, A.H.4
Wetzel, J.5
Volz, J.6
-
24
-
-
58549094894
-
Control of gene expression in Plasmodium falciparum - ten years on
-
Horrocks, P., Wong, E., Russell, K., and Emes, R.D. (2009) Control of gene expression in Plasmodium falciparum - ten years on. Mol Biochem Parasitol 164: 9-25.
-
(2009)
Mol Biochem Parasitol
, vol.164
, pp. 9-25
-
-
Horrocks, P.1
Wong, E.2
Russell, K.3
Emes, R.D.4
-
25
-
-
62649085538
-
The DNA-encoded nucleosome organization of a eukaryotic genome
-
Kaplan, N., Moore, I.K., Fondufe-Mittendorf, Y., Gossett, A.J., Tillo, D., Field, Y., etal. (2009) The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 458: 362-366.
-
(2009)
Nature
, vol.458
, pp. 362-366
-
-
Kaplan, N.1
Moore, I.K.2
Fondufe-Mittendorf, Y.3
Gossett, A.J.4
Tillo, D.5
Field, Y.6
-
26
-
-
78650576256
-
Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology
-
Kaplan, N., Hughes, T.R., Lieb, J.D., Widom, J., and Segal, E. (2010) Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology. Genome Biol 11: 140.
-
(2010)
Genome Biol
, vol.11
, pp. 140
-
-
Kaplan, N.1
Hughes, T.R.2
Lieb, J.D.3
Widom, J.4
Segal, E.5
-
27
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H., and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
28
-
-
60649095351
-
Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites
-
Lopez-Rubio, J.J., Mancio-Silva, L., and Scherf, A. (2009) Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites. Cell Host Microbe 5: 179-190.
-
(2009)
Cell Host Microbe
, vol.5
, pp. 179-190
-
-
Lopez-Rubio, J.J.1
Mancio-Silva, L.2
Scherf, A.3
-
29
-
-
30544449686
-
Histone H2AZ dimerizes with a novel variant H2B and is enriched at repetitive DNA in Trypanosoma brucei
-
Lowell, J.E., Kaiser, F., Janzen, C.J., and Cross, G.A. (2005) Histone H2AZ dimerizes with a novel variant H2B and is enriched at repetitive DNA in Trypanosoma brucei. J Cell Sci 118: 5721-5730.
-
(2005)
J Cell Sci
, vol.118
, pp. 5721-5730
-
-
Lowell, J.E.1
Kaiser, F.2
Janzen, C.J.3
Cross, G.A.4
-
30
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 A resolution
-
Luger, K., Mader, A.W., Richmond, R.K., Sargent, D.F., and Richmond, T.J. (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389: 251-260.
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
31
-
-
40049098866
-
Trypanosome H2Bv replaces H2B in nucleosomes enriched for H3 K4 and K76 trimethylation
-
Mandava, V., Janzen, C.J., and Cross, G.A. (2008) Trypanosome H2Bv replaces H2B in nucleosomes enriched for H3 K4 and K76 trimethylation. Biochem Biophys Res Commun 368: 846-851.
-
(2008)
Biochem Biophys Res Commun
, vol.368
, pp. 846-851
-
-
Mandava, V.1
Janzen, C.J.2
Cross, G.A.3
-
32
-
-
77956792283
-
Epigenetics in Plasmodium: what do we really know?
-
Merrick, C.J., and Duraisingh, M.T. (2010) Epigenetics in Plasmodium: what do we really know? Eukaryot Cell 9: 1150-1158.
-
(2010)
Eukaryot Cell
, vol.9
, pp. 1150-1158
-
-
Merrick, C.J.1
Duraisingh, M.T.2
-
33
-
-
33644656442
-
The malaria parasite Plasmodium falciparum histones: organization, expression, and acetylation
-
Miao, J., Fan, Q., Cui, L., Li, J., Li, J., and Cui, L. (2006) The malaria parasite Plasmodium falciparum histones: organization, expression, and acetylation. Gene 369: 53-65.
-
(2006)
Gene
, vol.369
, pp. 53-65
-
-
Miao, J.1
Fan, Q.2
Cui, L.3
Li, J.4
Li, J.5
Cui, L.6
-
34
-
-
79952229544
-
Expression of P. falciparum var genes involves exchange of the histone variant H2A.Z at the promoter
-
Petter, M., Lee, C.C., Byrne, T.J., Boysen, K.E., Volz, J., Ralph, S.A., etal. (2011) Expression of P. falciparum var genes involves exchange of the histone variant H2A.Z at the promoter. PLoS Pathog 7: e1001292.
-
(2011)
PLoS Pathog
, vol.7
-
-
Petter, M.1
Lee, C.C.2
Byrne, T.J.3
Boysen, K.E.4
Volz, J.5
Ralph, S.A.6
-
35
-
-
84874986296
-
H2A.Z and H2B.Z double-variant nucleosomes define intergenic regions and dynamically occupy var gene promoters in the malaria parasite Plasmodium falciparum
-
(in press).
-
Petter, M., Selvarajah, S.A., Lee, C.C., Hoe, C.W., Gupta, A.P., and Bozdech, Z. (2013) H2A.Z and H2B.Z double-variant nucleosomes define intergenic regions and dynamically occupy var gene promoters in the malaria parasite Plasmodium falciparum. Mol Microbiol (in press).
-
(2013)
Mol Microbiol
-
-
Petter, M.1
Selvarajah, S.A.2
Lee, C.C.3
Hoe, C.W.4
Gupta, A.P.5
Bozdech, Z.6
-
36
-
-
27144504752
-
Histones in functional diversification. Core histone variants
-
Pusarla, R.H., and Bhargava, P. (2005) Histones in functional diversification. Core histone variants. FEBS J 272: 5149-5168.
-
(2005)
FEBS J
, vol.272
, pp. 5149-5168
-
-
Pusarla, R.H.1
Bhargava, P.2
-
37
-
-
67649849939
-
Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum
-
Salcedo-Amaya, A.M., van Driel, M.A., Alako, B.T., Trelle, M.B., van den Elzen, A.M., Cohen, A.M., etal. (2009) Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum. Proc Natl Acad Sci USA 106: 9655-9660.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 9655-9660
-
-
Salcedo-Amaya, A.M.1
van Driel, M.A.2
Alako, B.T.3
van den Trelle, M.B.4
Elzen, A.M.5
Cohen, A.M.6
-
38
-
-
77953812681
-
Malaria: could its unusual epigenome be the weak spot?
-
Salcedo-Amaya, A.M., Hoeijmakers, W.A., Bartfai, R., and Stunnenberg, H.G. (2010) Malaria: could its unusual epigenome be the weak spot? Int J Biochem Cell Biol 42: 781-784.
-
(2010)
Int J Biochem Cell Biol
, vol.42
, pp. 781-784
-
-
Salcedo-Amaya, A.M.1
Hoeijmakers, W.A.2
Bartfai, R.3
Stunnenberg, H.G.4
-
39
-
-
68349125112
-
What controls nucleosome positions?
-
Segal, E., and Widom, J. (2009) What controls nucleosome positions? Trends Genet 25: 335-343.
-
(2009)
Trends Genet
, vol.25
, pp. 335-343
-
-
Segal, E.1
Widom, J.2
-
40
-
-
65449138352
-
Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei
-
Siegel, T.N., Hekstra, D.R., Kemp, L.E., Figueiredo, L.M., Lowell, J.E., Fenyo, D., etal. (2009) Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei. Genes Dev 23: 1063-1076.
-
(2009)
Genes Dev
, vol.23
, pp. 1063-1076
-
-
Siegel, T.N.1
Hekstra, D.R.2
Kemp, L.E.3
Figueiredo, L.M.4
Lowell, J.E.5
Fenyo, D.6
-
41
-
-
77949874234
-
Histone variants - ancient wrap artists of the epigenome
-
Talbert, P.B., and Henikoff, S. (2010) Histone variants - ancient wrap artists of the epigenome. Nat Rev Mol Cell Biol 11: 264-275.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 264-275
-
-
Talbert, P.B.1
Henikoff, S.2
-
42
-
-
84861647319
-
A unified phylogeny-based nomenclature for histone variants
-
Talbert, P.B., Ahmad, K., Almouzni, G., Ausio, J., Berger, F., Bhalla, P.L., etal. (2012) A unified phylogeny-based nomenclature for histone variants. Epigenetics Chromatin 5: 7.
-
(2012)
Epigenetics Chromatin
, vol.5
, pp. 7
-
-
Talbert, P.B.1
Ahmad, K.2
Almouzni, G.3
Ausio, J.4
Berger, F.5
Bhalla, P.L.6
-
43
-
-
67650403817
-
Global histone analysis by mass spectrometry reveals a high content of acetylated lysine residues in the malaria parasite Plasmodium falciparum
-
Trelle, M.B., Salcedo-Amaya, A.M., Cohen, A.M., Stunnenberg, H.G., and Jensen, O.N. (2009) Global histone analysis by mass spectrometry reveals a high content of acetylated lysine residues in the malaria parasite Plasmodium falciparum. J Proteome Res 8: 3439-3450.
-
(2009)
J Proteome Res
, vol.8
, pp. 3439-3450
-
-
Trelle, M.B.1
Salcedo-Amaya, A.M.2
Cohen, A.M.3
Stunnenberg, H.G.4
Jensen, O.N.5
-
44
-
-
84874212915
-
-
World Health Organization World Malaria Report 2010. WHO Global Malaria Programme.
-
World Health Organization (2010) World Malaria Report 2010. WHO Global Malaria Programme.
-
(2010)
-
-
|