Sphingobium cupriresistens sp. nov., a copper-resistant bacterium isolated from copper mine soil, and emended description of the genus Sphingobium

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART2, 2013, Pages 604-609

  Li, Liqiong ^a   Liu, Hongliang ^a   Shi, Zunji ^a   Wang, Gejiao ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; GLYCOSPHINGOLIPID; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; SPERMIDINE; UBIQUINONE;

ARTICLE; BACTERIUM; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHINA; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GRAM NEGATIVE ANAEROBIC BACTERIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SOIL; SPHINGOBIUM ABIKONENSE; SPHINGOBIUM CUPRIRESISTENS; SPHINGOBIUM FRANCENSE; SPHINGOBIUM JAPONICUM; SPHINGOBIUM RHIZOVICINUM; SPHINGOBIUM XENOPHAGUM; SPHINGOBIUM YANOIKUYAE;

EID: 84874086439     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.040865-0     Document Type: Article

References (42)

1. Andreazza, R., Pieniz, S., Wolf, L., Lee, M.-K., Camargo, F. A. O. & Okeke, B. C. (2010). Characterization of copper bioreduction and biosorption by a highly copper resistant bacterium isolated from copper-contaminated vineyard soil. Sci Total Environ 408, 1501-1507.
2. Andreazza, R., Okeke, B. C., Pieniz, S., Bortolon, L., Lambais, M. R. & Camargo, F. A. O. (2012). Effects of stimulation of copper bioleaching on microbial community in vineyard soil and copper mining waste. Biol Trace Elem Res 146, 124-133.
3. Arden-Jones, M. P., McCarthy, A. J. & Cross, T. (1979). Taxonomic and serologic studies on Micropolyspora faeni and Micropolyspora strains from soil bearing the specific epithet rectivirgula. J Gen Microbiol 115, 343-354.
4. Bala, K., Sharma, P. & Lal, R. (2010). Sphingobium quisquiliarum sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from an HCH-contaminated soil. Int J Syst Evol Microbiol 60, 429-433.
5. Basta, T., Buerger, S. & Stolz, A. (2005). Structural and replicative diversity of large plasmids from sphingomonads that degrade polycyclic aromatic compounds and xenobiotics. Microbiology 151, 2025-2037.
6. Busse, H.-J. & Auling, G. (1988). Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1-8.
7. Busse, H.-J., Bunka, S., Hensel, A. & Lubitz, W. (1997). Discrimination of members of the family Pasteurellaceae based on polyamine patterns. Int J Syst Bacteriol 47, 698-708.
8. Busse, H.-J., Kampfer, P. & Denner, E. B. M. (1999). Chemotaxonomic characterisation of Sphingomonas. J Ind Microbiol Biotechnol 23, 242-251.
9. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2, 4-diaminobutyric acid. J Appl Bacteriol 48, 459-470.
10. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
11. Dadhwal, M., Jit, S., Kumari, H. & Lal, R. (2009). Sphingobium chinhatense sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from an HCH dumpsite. Int J Syst Evol Microbiol 59, 3140-3144.
12. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
13. Garg, N., Bala, K. & Lal, R. (2012). Sphingobium lucknowense sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from HCH-contaminated soil. Int J Syst Evol Microbiol 62, 618-623.
14. Gordon, R. E. & Mihm, J. M. (1957). A comparative study of some strains received as nocardiae. J Bacteriol 73, 15-27.
15. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
16. Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
17. He, L. Y., Zhang, Y. F., Ma, H. Y., Su, L. N., Chen, Z. J., Wang, Q. Y., Qian, M. & Sheng, X. F. (2010). Characterization of copper-resistant bacteria and assessment of bacterial communities in rhizosphere soils of copper-tolerant plants. Appl Soil Ecol 44, 49-55.
18. Huss, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
19. Kim, S. J., Chun, J., Bae, K. S. & Kim, Y. C. (2000). Polyphasic assignment of an aromatic-degrading Pseudomonas sp., strain DJ77, in the genus Sphingomonas as Sphingomonas chungbukensis sp. nov. Int J Syst Evol Microbiol 50, 1641-1647.
20. Kim, O.-S., Cho, Y.-J., Lee, K., Yoon, S.-H., Kim, M., Na, H., Park, S.-C., Jeon, Y. S., Lee, J.-H. & other authors (2007). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
21. Kumari, H., Gupta, S. K., Jindal, S., Katoch, P. & Lal, R. (2009). Sphingobium lactosutens sp. nov., isolated from a hexachlorocyclo-hexane dump site and Sphingobium abikonense sp. nov., isolated from oil-contaminated soil. Int J Syst Evol Microbiol 59, 2291-2296.
22. Liang, Q. F. & Lloyd-Jones, G. (2010). Sphingobium scionense sp. nov., an aromatic hydrocarbon-degrading bacterium isolated from contaminated sawmill soil. Int J Syst Evol Microbiol 60, 413-416.
23. Lim, C. K. & Cooksey, D. A. (1993). Characterization of chromosomal homologs of the plasmid-borne copper resistance operon of Pseudomonas syringae. J Bacteriol 175, 4492-4498.
24. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
25. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
26. Pal, R., Bala, S., Dadhwal, M., Kumar, M., Dhingra, G., Prakash, O., Prabagaran, S. R., Shivaji, S., Cullum, J. & other authors (2005). Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov. and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukensis comb. nov. Int J Syst Evol Microbiol 55, 1965-1972.
27. Ryu, E. (1938). On the Gram-differentiation of bacteria by the simplest method. J Jpn Soc Vet Sci 17, 58-63.
28. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
29. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhart, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
30. Takeuchi, M., Hamana, K. & Hiraishi, A. (2001). Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 51, 1405-1417.
31. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31-36.
32. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
33. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
34. Ushiba, Y., Takahara, Y. & Ohta, H. (2003). Sphingobium amiense sp. nov., a novel nonylphenol-degrading bacterium isolated from a river sediment. Int J Syst Evol Microbiol 53, 2045-2048.
35. Vaz-Moreira, I., Faria, C., Lopes, A. R., Svensson, L., Falsen, E., Moore, E. R. B., Ferreira, A. C. S., Nunes, O. C. & Manaia, C. M. (2009). Sphingobium vermicomposti sp. nov., isolated from vermin-compost. Int J Syst Evol Microbiol 59, 3145-3149.
36. Wang, B.-Z., Guo, P., Zheng, J.-W., Hang, B.-J., Li, L., He, J. & Li, S.-P. (2011). Sphingobium wenxiniae sp. nov., a synthetic pyrethroid (SP)-degrading bacterium isolated from activated sludge in an SP-manufacturing wastewater treatment facility. Int J Syst Evol Microbiol 61, 1776-1780.
37. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
38. Wilson, K. H., Blitchington, R. B. & Greene, R. C. (1990). Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction. J Clin Microbiol 28, 1942-1946.
39. Wittich, R.-M., Busse, H.-J., Kampfer, P., Tiirola, M., Wieser, M., Macedo, A. J. & Abraham, W.-R. (2007). Sphingobium aromaticicon-vertens sp. nov., a xenobiotic-compound-degrading bacterium from polluted river sediment. Int J Syst Evol Microbiol 57, 306-310.
40. Yabuuchi, E., Yano, I., Oyaizu, H., Hashimoto, Y., Ezaki, T. & Yamamoto, H. (1990). Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas. Microbiol Immunol 34, 99-119.
41. Yan, Q.-X., Wang, Y.-X., Li, S.-P., Li, W.-J. & Hong, Q. (2010). Sphingobium qiguonii sp. nov., a carbaryl-degrading bacterium isolated from a wastewater treatment system. Int J Syst Evol Microbiol 60, 2724-2728.
42. Young, C.-C., Arun, A. B., Kampfer, P., Busse, H.-J., Lai, W.-A., Chen, W.-M., Shen, F.-T. & Rekha, P. D. (2008). Sphingobium rhizovicinum sp. nov., isolated from rhizosphere soil of Fortunella hindsii (Champ. ex Benth.) Swingle. Int J Syst Evol Microbiol 58, 1801-1806.