Sphingobium chinhatense sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from an HCH dumpsite

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 12, 2009, Pages 3140-3144

  Dadhwal, Mandeep ^a   Jit, Simran ^a   Kumari, Hansi ^a   Lal, Rup ^a  

^a UNIVERSITY OF DELHI   (India)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; HYDROXY FATTY ACID; ISOPRENE; LIPID; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLMETHYLETHANOLAMINE; POLYAMINE; QUINONE DERIVATIVE; RNA 16S; SPERMIDINE; UBIQUINONE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENE CLUSTER; GENETIC DIFFERENCE; GENETIC SIMILARITY; GENOTYPE; GENUS; GRAM NEGATIVE BACTERIUM; HEXACHLOROCYCLOHEXANE DEGRADING BACTERIUM; LANDFILL; MORPHOLOGY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SPECIES IDENTIFICATION; SPHINGOBIUM CHINHATENSE; SPHINGOBIUM FRANCENSE; SPHINGOBIUM INDICUM; SPHINGOBIUM JAPONICUM;

BIODEGRADATION, ENVIRONMENTAL; DNA, BACTERIAL; DNA, RIBOSOMAL; INDUSTRIAL WASTE; LINDANE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SPHINGOMONADACEAE;

BACTERIA (MICROORGANISMS); SPHINGOBIUM; SPHINGOBIUM FRANCENSE; SPHINGOBIUM INDICUM; SPHINGOBIUM JAPONICUM;

EID: 72149111673     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.005553-0     Document Type: Article

References (34)

1. Arden-Jones, M. P., McCarthy, A. J. & Cross, T. (1979). Taxonomic and serological studies on Micropolyspora faeni and Micropolyspora strains from soil bearing the specific epithet rectivirgula. J Gen Microbiol 115, 343-354.
2. Beiss, U. (1964). Zur papierchromatographischen Auftrennung von Pflanzenlipiden. J Chromatogr 13, 104-110 (in German).
3. Busse, H.-J. & Auling, G. (1988). Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1-8.
4. Busse, H.-J., Kämpfer, P. & Denner, E. B. M. (1999). Chemotaxonomic characterization of Sphingomonas. J Ind Microbiol Biotechnol 23, 242-251.
5. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycan based on 2,4-diamino butyric acid (DAB). J Appl Bacteriol 48, 459-470.
6. Collins, C. H., Lyne, P. M. & Grange, J. M. (1989). Microbiological Methods, 6th edn. London: Butterworth.
7. Consden, R. & Gordon, A. H. (1948). Effect of salt on partition chromatograms. Nature 162, 180-181.
8. Dadhwal, M., Singh, A., Prakash, O., Gupta, S. K., Kumari, K., Sharma, P., Jit, S., Verma, M., Holliger, C. & Lal, R. (2009). Proposal of biostimulation for hexachlorocyclohexane (HCH)-decontamination and characterization of culturable bacterial community from high-dose point HCH-contaminated soils. J Appl Microbiol 106, 381-392.
9. Dittmer, J. C. F. & Lester, R. L. (1964). A simple, specific spray for the detection of phospholipids on thin-layer chromatograms. J Lipid Res 15, 126-127.
10. Dogra, C., Raina, V., Pal, R., Suar, M., Lal, S., Gartemann, K. H., Holliger, C., van der Meer, J. R. & Lal, R. (2004). Organization of lin genes and IS6100 among different strains of hexachlorcyclohexane degrading Sphingomonas paucimobilis strains: evidence for horizontal transfer. J Bacteriol 186, 2225-2235.
11. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
12. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
13. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
14. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
15. Gunstone, F. D. & Jacobsberg, F. R. (1972). Fatty acids, part 35: the preparation and properties of the complete series of methyl epoxyoctadecanoates. Chem Phys Lipids 9, 26-64.
16. Gupta, S. K., Lal, D. & Lal, R. (2009). Novosphingobium panipatense sp. nov. and Novosphingobium mathurense sp. nov., from oil-contaminated soil. Int J Syst Evol Microbiol 59, 156-161.
17. Jacin, H. & Mishkin, A. R. (1965). Separation of carbohydrates on borate-impregnated silica gel G plates. J Chromatogr 18, 170-173.
18. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
19. Kumar, M., Verma, M. & Lal, R. (2008). Devosia chinhatensis sp. nov., isolated from a hexachlorocyclohexane (HCH) dump site in India. Int J Syst Evol Microbiol 58, 861-865.
20. Kuykendall, L. D., Roy, M. A. O., Neill, J. J. & Devine, T. E. (1988). Fatty acids, antibiotic resistance and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38, 358-361.
21. Lal, R., Dogra, C., Malhotra, S., Sharma, P. & Pal, R. (2006). Diversity, distribution and divergence of lin genes in hexachlorocyclohexane-degrading sphingomonads. Trends Biotechnol 24, 121-130.
22. McCarthy, A. J. & Cross, T. (1984). A taxonomic study of Thermomonospora and other monosporic actinomycetes. J Gen Microbiol 130, 5-25.
23. Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids. J Clin Microbiol 16, 584-586.
24. Pal, R., Bala, S., Dadhwal, M., Kumar, M., Dhingra, G., Prakash, O., Prabagaran, S. R., Shivaji, S., Cullum, J. & other authors (2005). Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov., and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukense comb. nov. Int J Syst Evol Microbiol 55, 1965-1972.
25. Prakash, O. & Lal, R. (2006). Description of Sphingobium fuliginis sp. nov., a phenanthrene-degrading bacterium from a fly ash dumping site, and reclassification of Sphingomonas cloacae as Sphingobium cloacae comb. nov. Int J Syst Evol Microbiol 56, 2147-2152.
26. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
27. Singh, A. & Lal, R. (2009). Sphingobium ummariense sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium, isolated from HCH-contaminated soil. Int J Syst Evol Microbiol 59, 162-166.
28. Takeuchi, M., Hamana, K. & Hiraishi, A. (2001). Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 51, 1405-1417.
29. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
30. Tindall, B. J. (1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
31. Tindall, B. J. (1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
32. Wagner, H., Horhammer, L. & Wolff, P. (1961). Dünnschicht-chromatographie von Phosphatiden und Glykolipiden. Biochem Z 334, 175-184 (in German).
33. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
34. Willett, K. L., Ulrich, E. M. & Hites, R. A. (1998). Differential toxicity and environmental fates of hexachlorocyclohexane isomers. Environ Sci Technol 32, 2197-2207.