메뉴 건너뛰기




Volumn 57, Issue 2, 2007, Pages 306-310

Sphingobium aromaticiconvertens sp. nov., a xenobiotic-compound-degrading bacterium from polluted river sediment

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; DIBENZOFURAN DERIVATIVE; GLUCOSAMINE; LIPID; POLYAMINE; RNA 16S; UBIQUINONE; XENOBIOTIC AGENT;

EID: 33847191443     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64433-0     Document Type: Article
Times cited : (35)

References (36)
  • 1
    • 0031434908 scopus 로고    scopus 로고
    • Phospho- and sulfolipids as biomarkers of Caulobacter sensu lato, Brevundimonas and Hyphomonas
    • Abraham, W.-R., Meyer, H., Lindholst S., Vancanneyt, M. & Smit, J. (1997). Phospho- and sulfolipids as biomarkers of Caulobacter sensu lato, Brevundimonas and Hyphomonas. Syst Appl Microbiol 20, 522-539.
    • (1997) Syst Appl Microbiol , vol.20 , pp. 522-539
    • Abraham, W.-R.1    Meyer, H.2    Lindholst, S.3    Vancanneyt, M.4    Smit, J.5
  • 2
    • 0032987957 scopus 로고    scopus 로고
    • Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobacter
    • & other authors
    • Abraham, W.-R., Strömpl, C., Meyer, H., Lindholst S., Moore, E. R. B., Christ, R., Vancanneyt, M., Tindall, B. J., Bennasar, A. & other authors (1999). Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobacter. Int J Syst Bacteriol 49, 1053-1073.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 1053-1073
    • Abraham, W.-R.1    Strömpl, C.2    Meyer, H.3    Lindholst, S.4    Moore, E.R.B.5    Christ, R.6    Vancanneyt, M.7    Tindall, B.J.8    Bennasar, A.9
  • 5
    • 18144453657 scopus 로고    scopus 로고
    • Taxonomic study of aromatics-degrading bacteria from the deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov
    • Balkwill, D. L., Drake, G. R., Reeves, R. H., Fredrickson, J. K., White, D. C., Ringelberg, D. B., Chandler, D. P., Romine, M. F., Kennedy, D. W. & Spadoni, C. M. (1997). Taxonomic study of aromatics-degrading bacteria from the deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov. Int J Syst Bacteriol 47, 191-201.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 191-201
    • Balkwill, D.L.1    Drake, G.R.2    Reeves, R.H.3    Fredrickson, J.K.4    White, D.C.5    Ringelberg, D.B.6    Chandler, D.P.7    Romine, M.F.8    Kennedy, D.W.9    Spadoni, C.M.10
  • 6
    • 84887070146 scopus 로고
    • Polyamine patterns as a chemotaxonomic marker within the Proteobacteria
    • Busse, H.-J. & Auling, G. (1988). Polyamine patterns as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1-8.
    • (1988) Syst Appl Microbiol , vol.11 , pp. 1-8
    • Busse, H.-J.1    Auling, G.2
  • 7
    • 0030807960 scopus 로고    scopus 로고
    • Discrimination of members of the family Pasteurellaceae based on polyamine patterns
    • Busse, H.-J., Bunka, S., Hensel, A. & Lubitz, W. (1997). Discrimination of members of the family Pasteurellaceae based on polyamine patterns. Int J Syst Bacteriol 47, 698-708.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 698-708
    • Busse, H.-J.1    Bunka, S.2    Hensel, A.3    Lubitz, W.4
  • 9
    • 27844478181 scopus 로고    scopus 로고
    • Description of two novel species, Sphingomonas abaci sp. nov. and Sphingomonas panni sp. nov
    • Busse, H.-J., Hauser, E. & Kämpfer, P. (2005). Description of two novel species, Sphingomonas abaci sp. nov. and Sphingomonas panni sp. nov. Int J Syst Evol Microbiol 55, 2565-2569.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 2565-2569
    • Busse, H.-J.1    Hauser, E.2    Kämpfer, P.3
  • 10
    • 0030916145 scopus 로고    scopus 로고
    • Comparative study of five polycyclic aromatic hydrocarbon degrading bacterial strains isolated from contaminated soils
    • Dagher, F., Deziel, E., Lirette, P., Paquette, G., Bisaillon, J. G. & Villemur, R. (1997). Comparative study of five polycyclic aromatic hydrocarbon degrading bacterial strains isolated from contaminated soils. Can J Microbiol 43, 368-377.
    • (1997) Can J Microbiol , vol.43 , pp. 368-377
    • Dagher, F.1    Deziel, E.2    Lirette, P.3    Paquette, G.4    Bisaillon, J.G.5    Villemur, R.6
  • 11
    • 0000594322 scopus 로고
    • Polar lipid fatty acid composition of Lake Vechten seston - An ecological application of lipid analysis
    • Fredrickson, H. L., Cappenberg, T. E. & De Leeuw, J. (1986). Polar lipid fatty acid composition of Lake Vechten seston - an ecological application of lipid analysis. FEMS Microbiol Ecol 38, 381-396.
    • (1986) FEMS Microbiol Ecol , vol.38 , pp. 381-396
    • Fredrickson, H.L.1    Cappenberg, T.E.2    De Leeuw, J.3
  • 13
    • 0035073290 scopus 로고    scopus 로고
    • Sphingomonas cloacae sp. nov., a nonylphenol-degrading bacterium isolated from wastewater of a sewage-treatment plant in Tokyo
    • Fujii, K., Urano, N., Ushio, H., Satomi, M. & Kimura, S. (2001). Sphingomonas cloacae sp. nov., a nonylphenol-degrading bacterium isolated from wastewater of a sewage-treatment plant in Tokyo. Int J Syst Evol Microbiol 51, 603-610.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 603-610
    • Fujii, K.1    Urano, N.2    Ushio, H.3    Satomi, M.4    Kimura, S.5
  • 14
    • 0000225313 scopus 로고
    • Similarity analysis of DNAs
    • In Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
    • Johnson, J. L. (1994). Similarity analysis of DNAs. In Methods for General and Molecular Bacteriology, pp. 664-666. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
    • (1994) Methods for General and Molecular Bacteriology , pp. 664-666
    • Johnson, J.L.1
  • 15
    • 1142281826 scopus 로고    scopus 로고
    • Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: Comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries
    • Junca, H. & Pieper, D. H. (2004). Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries. Environ Microbiol 6, 95-110.
    • (2004) Environ Microbiol , vol.6 , pp. 95-110
    • Junca, H.1    Pieper, D.H.2
  • 16
    • 0028265724 scopus 로고
    • Genetic and phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils
    • Ka, J. O., Holben, W. E. & Tiedje, J. M. (1994). Genetic and phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils. Appl Environ Microbiol 60, 1106-1115.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 1106-1115
    • Ka, J.O.1    Holben, W.E.2    Tiedje, J.M.3
  • 17
    • 51249170746 scopus 로고
    • Microbiological characterization of a fuel oil contaminated site including numerical identification of heterotrophic water and soil bacteria
    • Kämpfer, P., Steiof, M. & Dott, W. (1991). Microbiological characterization of a fuel oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21, 227-251.
    • (1991) Microb Ecol , vol.21 , pp. 227-251
    • Kämpfer, P.1    Steiof, M.2    Dott, W.3
  • 18
    • 0026787472 scopus 로고
    • Numerical and chemotaxonomy of polyphosphate accumulating Acinetobacter strains with high polyphosphate: AMP phosphotransferase (PPAT) activity
    • Kämpfer, P., Bark, K., Busse, H.-J., Auling, G. & Dott W. (1992). Numerical and chemotaxonomy of polyphosphate accumulating Acinetobacter strains with high polyphosphate: AMP phosphotransferase (PPAT) activity. Syst Appl Microbiol 15, 409-419.
    • (1992) Syst Appl Microbiol , vol.15 , pp. 409-419
    • Kämpfer, P.1    Bark, K.2    Busse, H.-J.3    Auling, G.4    Dott, W.5
  • 19
    • 0342940780 scopus 로고    scopus 로고
    • Classification of "Pseudomonas azotocolligans" Anderson 1955, 132, in the genus Sphingomonas as Sphingomonas trueperi sp. nov
    • Kämpfer, P., Denner, E. B. M., Meyer, S., Moore, E. R. B. & Busse, H.-J. (1997). Classification of "Pseudomonas azotocolligans" Anderson 1955, 132, in the genus Sphingomonas as Sphingomonas trueperi sp. nov. Int J Syst Bacteriol 47, 577-583.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 577-583
    • Kämpfer, P.1    Denner, E.B.M.2    Meyer, S.3    Moore, E.R.B.4    Busse, H.-J.5
  • 21
    • 0033854414 scopus 로고    scopus 로고
    • Polyphasic assignment of an aromatic degrading Pseudomonas sp. strain DJ77, in the genus Sphingomonas as Sphingomonas chungbukensis sp. nov
    • Kim, S.-J., Chun, J., Bae, K. S. & Kim, Y.-C. (2000). Polyphasic assignment of an aromatic degrading Pseudomonas sp. strain DJ77, in the genus Sphingomonas as Sphingomonas chungbukensis sp. nov. Int J Syst Evol Microbiol 50, 1641-1647.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1641-1647
    • Kim, S.-J.1    Chun, J.2    Bae, K.S.3    Kim, Y.-C.4
  • 22
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 23
    • 0030790981 scopus 로고    scopus 로고
    • Glutathione S-transferase-encoding gene as a potential probe for environmental bacterial isolates capable of degrading polycyclic aromatic hydrocarbons
    • Lloyd-Jones, G. & Lau, P. C. (1997). Glutathione S-transferase-encoding gene as a potential probe for environmental bacterial isolates capable of degrading polycyclic aromatic hydrocarbons. Appl Environ Microbiol 63, 3286-3290.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3286-3290
    • Lloyd-Jones, G.1    Lau, P.C.2
  • 25
    • 26244458524 scopus 로고    scopus 로고
    • Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov., and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukense comb. nov
    • & other authors
    • Pal, R., Bala, S., Dadhwal, M., Kumar, M., Dhingra, G., Prakash, O., Prabagaran, S. R., Shivaji, S., Cullum, J. & other authors (2005). Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov., and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukense comb. nov. Int J Syst Evol Microbiol 55, 1965-1972.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1965-1972
    • Pal, R.1    Bala, S.2    Dadhwal, M.3    Kumar, M.4    Dhingra, G.5    Prakash, O.6    Prabagaran, S.R.7    Shivaji, S.8    Cullum, J.9
  • 26
    • 33645211187 scopus 로고    scopus 로고
    • Proposal to reclassify [Sphingomonas] xenophaga Stolz et al. 2000 and [Sphingomonas] taejonensis Lee et al. 2001 as Sphingobium xenophaga comb. nov. and Sphingopyxis taejonensis comb. nov., respectively
    • Pal, R., Bhasin, V. K. & Lai, R. (2006). Proposal to reclassify [Sphingomonas] xenophaga Stolz et al. 2000 and [Sphingomonas] taejonensis Lee et al. 2001 as Sphingobium xenophaga comb. nov. and Sphingopyxis taejonensis comb. nov., respectively. Int J Syst Evol Microbiol 56, 667-670.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 667-670
    • Pal, R.1    Bhasin, V.K.2    Lai, R.3
  • 27
    • 0029983259 scopus 로고    scopus 로고
    • Isolation and characterization of soil microorganisms capable of utilizing the herbicide diclofop-methyl as a sole source of carbon and energy
    • Smith-Grenier, L. L. & Adkins, A. (1996). Isolation and characterization of soil microorganisms capable of utilizing the herbicide diclofop-methyl as a sole source of carbon and energy. Can J Microbiol 42, 221-226.
    • (1996) Can J Microbiol , vol.42 , pp. 221-226
    • Smith-Grenier, L.L.1    Adkins, A.2
  • 29
    • 0034919134 scopus 로고    scopus 로고
    • Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses
    • Takeuchi, M., Hamana, K. & Hiraishi, A. (2001). Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 51, 1405-1417.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 1405-1417
    • Takeuchi, M.1    Hamana, K.2    Hiraishi, A.3
  • 30
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 31
    • 0025098748 scopus 로고
    • Lipid composition of Halobacterium lacusprofundi
    • Tindall, B. J. (1990). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
    • (1990) FEMS Microbiol Lett , vol.66 , pp. 199-202
    • Tindall, B.J.1
  • 32
    • 0345327871 scopus 로고    scopus 로고
    • Sphingobium amiense sp. nov., a novel nonylphenol-degrading bacterium isolated from a river sediment
    • Ushiba, Y., Takahara, Y. & Ohta, H. (2003). Sphingobium amiense sp. nov., a novel nonylphenol-degrading bacterium isolated from a river sediment. Int J Syst Evol Microbiol 53, 2045-2048.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 2045-2048
    • Ushiba, Y.1    Takahara, Y.2    Ohta, H.3
  • 33
    • 0001279038 scopus 로고
    • Preparation of genomic DNA from bacteria
    • In Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: Wiley & Sons Inc
    • Wilson, K. (1994). Preparation of genomic DNA from bacteria. In Current Protocols in Molecular Biology, pp. 241-245. Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: Wiley & Sons Inc.
    • (1994) Current Protocols in Molecular Biology , pp. 241-245
    • Wilson, K.1
  • 34
    • 0033375010 scopus 로고    scopus 로고
    • Interaction of Sphingomonas and Pseudomonas strains in the degradation of chlorinated dibenzofurans
    • Wittich, R.-M., Strömpl, C., Moore, E. R. B., Blasco, R. & Timmis, K. N. (1999). Interaction of Sphingomonas and Pseudomonas strains in the degradation of chlorinated dibenzofurans. J Ind Microbiol Biotechnol 23, 353-358.
    • (1999) J Ind Microbiol Biotechnol , vol.23 , pp. 353-358
    • Wittich, R.-M.1    Strömpl, C.2    Moore, E.R.B.3    Blasco, R.4    Timmis, K.N.5
  • 35
    • 0025219590 scopus 로고
    • Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas
    • Yabuuchi, E., Yano, I., Oyaizu, H., Hashimoto, Y., Ezaki, T. & Yamamoto, H. (1990). Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas. Microbiol Immunol 34, 99-119.
    • (1990) Microbiol Immunol , vol.34 , pp. 99-119
    • Yabuuchi, E.1    Yano, I.2    Oyaizu, H.3    Hashimoto, Y.4    Ezaki, T.5    Yamamoto, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.