-
2
-
-
54449098752
-
Rapid SNP discovery and genetic mapping using sequenced RAD markers
-
Baird NA, Etter PD, Atwood TS et al. (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS ONE, 3, e3376.
-
(2008)
PLoS ONE
, vol.3
-
-
Baird, N.A.1
Etter, P.D.2
Atwood, T.S.3
-
3
-
-
79958083178
-
Identification of SNP and SSR markers in eggplant using RAD tag sequencing
-
Barchi L, Lanteri S, Portis E et al. (2011) Identification of SNP and SSR markers in eggplant using RAD tag sequencing. BMC Genomics, 12, 304.
-
(2011)
BMC Genomics
, vol.12
, pp. 304
-
-
Barchi, L.1
Lanteri, S.2
Portis, E.3
-
4
-
-
3042672020
-
Functional annotation of the Arabidopsis genome using controlled vocabularies
-
Berardini TZ, Mundodi S, Reiser et al. (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiology, 135, 1-11.
-
(2004)
Plant Physiology
, vol.135
, pp. 1-11
-
-
Berardini, T.Z.1
Mundodi, S.2
Reiser3
-
5
-
-
0019302053
-
Construction of a genetic linkage map in man using restriction fragment polymorphisms
-
Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment polymorphisms. American Journal of Human Genetics, 32, 314-331.
-
(1980)
American Journal of Human Genetics
, vol.32
, pp. 314-331
-
-
Botstein, D.1
White, R.L.2
Skolnick, M.3
Davis, R.W.4
-
6
-
-
80052802930
-
Genotyping by Allele-Specific amplification (KASPar)
-
doi:10.1101/pdb.prot4841.
-
Cuppen E (2007) Genotyping by Allele-Specific amplification (KASPar). Cold Spring Harbor Protocols, doi:10.1101/pdb.prot4841.
-
(2007)
Cold Spring Harbor Protocols
-
-
Cuppen, E.1
-
7
-
-
79959300621
-
Applications of next generation sequencing in molecular ecology of non-model organisms
-
Ekblom R, Galindo J (2011) Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity, 107, 1-15.
-
(2011)
Heredity
, vol.107
, pp. 1-15
-
-
Ekblom, R.1
Galindo, J.2
-
8
-
-
79954584270
-
Local De Novo assembly of RAD Paired-End contigs using short sequencing reads
-
Etter PD, Preston JL, Bassham S et al. (2011) Local De Novo assembly of RAD Paired-End contigs using short sequencing reads. PLoS ONE, 6, e18561.
-
(2011)
PLoS ONE
, vol.6
-
-
Etter, P.D.1
Preston, J.L.2
Bassham, S.3
-
9
-
-
78751665708
-
The next generation of molecular markers from massively parallel sequencing of pooled DNA samples
-
Futschik A, Schlötterer C (2010) The next generation of molecular markers from massively parallel sequencing of pooled DNA samples. Genetics, 186, 207-218.
-
(2010)
Genetics
, vol.186
, pp. 207-218
-
-
Futschik, A.1
Schlötterer, C.2
-
10
-
-
79951748075
-
SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing
-
Geraldes A, Pang J, Thiessen N et al. (2011) SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing. Molecular Ecology Resources, 11(Suppl. 1), 81-92.
-
(2011)
Molecular Ecology Resources
, vol.11
, Issue.SUPPL. 1
, pp. 81-92
-
-
Geraldes, A.1
Pang, J.2
Thiessen, N.3
-
11
-
-
70349973749
-
Characterizing natural variation using next-generation sequencing technologies
-
Gilad Y, Pritchard JK, Thornton K (2009) Characterizing natural variation using next-generation sequencing technologies. Trends in Genetics, 25, 463-471.
-
(2009)
Trends in Genetics
, vol.25
, pp. 463-471
-
-
Gilad, Y.1
Pritchard, J.K.2
Thornton, K.3
-
12
-
-
0346801873
-
The Gene Ontology (GO) database and informatics resource
-
Harris M, Clark J, Ireland A et al. (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Research, 32, D258-D261.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Harris, M.1
Clark, J.2
Ireland, A.3
-
13
-
-
79951759855
-
Application of SNPs for population genetics of non-model organisms: new opportunities and challenges
-
Helyar SJ, Hemmer-Hanson J, Bekkevold D et al. (2011) Application of SNPs for population genetics of non-model organisms: new opportunities and challenges. Molecular Ecology Resources, 11, 123-136.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 123-136
-
-
Helyar, S.J.1
Hemmer-Hanson, J.2
Bekkevold, D.3
-
14
-
-
79951748696
-
Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout
-
Hohenlohe P, Amish S, Catchen J et al. (2011) Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout. Molecular Ecology Resources, 11, 117-122.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 117-122
-
-
Hohenlohe, P.1
Amish, S.2
Catchen, J.3
-
15
-
-
33745851165
-
Spatiotemporal structure of genetic variation of a spreading plant metapopulation on dynamic riverbanks along the Meuse river
-
Jacquemyn H, Honnay O, Van Looy K, Breyne P (2006) Spatiotemporal structure of genetic variation of a spreading plant metapopulation on dynamic riverbanks along the Meuse river. Heredity, 96, 471-478.
-
(2006)
Heredity
, vol.96
, pp. 471-478
-
-
Jacquemyn, H.1
Honnay, O.2
Van Looy, K.3
Breyne, P.4
-
16
-
-
84863700222
-
The development of a genome wide SNP set for the barnacle goose Branta leucopsis
-
Jonker RM, Zhang Q, Van Hooft P, Loonen MJJE, Van der Jeugd HP et al. (2012) The development of a genome wide SNP set for the barnacle goose Branta leucopsis. PLoS ONE, 7, e38412.
-
(2012)
PLoS ONE
, vol.7
-
-
Jonker, R.M.1
Zhang, Q.2
Van Hooft, P.3
Loonen, M.J.J.E.4
Van der Jeugd, H.P.5
-
17
-
-
34547852208
-
SciRoKo: a new tool for whole genome microsatellite search and investigation
-
Kofler R, Schlotterer C, Lelley T (2007) SciRoKo: a new tool for whole genome microsatellite search and investigation. Bioinformatics, 23, 1683-1685.
-
(2007)
Bioinformatics
, vol.23
, pp. 1683-1685
-
-
Kofler, R.1
Schlotterer, C.2
Lelley, T.3
-
18
-
-
79953177468
-
Aligning short sequencing reads with bowtie
-
Unit 11.7.
-
Langmead B (2010) Aligning short sequencing reads with bowtie. Current Protocols in Bioinformatics, 11, Unit 11.7.
-
(2010)
Current Protocols in Bioinformatics
, vol.11
-
-
Langmead, B.1
-
19
-
-
77949587649
-
Fast and accurate long read alignment with Burrows-Wheeler Transform
-
Li H, Durbin R (2010) Fast and accurate long read alignment with Burrows-Wheeler Transform. Bioinformatics, 26, 589-595.
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
21
-
-
0036478903
-
Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
-
Morgante M, Hanafey M, Powell W (2002) Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nature Genetics, 30, 194-200.
-
(2002)
Nature Genetics
, vol.30
, pp. 194-200
-
-
Morgante, M.1
Hanafey, M.2
Powell, W.3
-
22
-
-
1642271573
-
SNPs in ecology, evolution and conservation
-
Morin PA, Luikart G, Wayne RK et al. (2004) SNPs in ecology, evolution and conservation. Trends in Ecology and Evolution, 19, 208-216.
-
(2004)
Trends in Ecology and Evolution
, vol.19
, pp. 208-216
-
-
Morin, P.A.1
Luikart, G.2
Wayne, R.K.3
-
23
-
-
0016629918
-
The bottleneck effect and genetic variability in populations
-
Nei M, Maruyama T, Chakraborty R (1975) The bottleneck effect and genetic variability in populations. Evolution, 29, 1-10.
-
(1975)
Evolution
, vol.29
, pp. 1-10
-
-
Nei, M.1
Maruyama, T.2
Chakraborty, R.3
-
24
-
-
77951894310
-
Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery
-
Parchman TL, Geist KS, Grahnen JA et al. (2010) Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. BMC Genomics, 11, 180.
-
(2010)
BMC Genomics
, vol.11
, pp. 180
-
-
Parchman, T.L.1
Geist, K.S.2
Grahnen, J.A.3
-
25
-
-
74849088324
-
Microsatellites in Brassica unigenes: relative abundance, marker design, and use in comparative physical mapping and genome analysis
-
Parida SK, Yadava DK, Mohapatra T (2010) Microsatellites in Brassica unigenes: relative abundance, marker design, and use in comparative physical mapping and genome analysis. Genome, 53, 55-67.
-
(2010)
Genome
, vol.53
, pp. 55-67
-
-
Parida, S.K.1
Yadava, D.K.2
Mohapatra, T.3
-
26
-
-
34848879778
-
PCA-correlated SNPs for structure identification in worldwide human populations
-
Paschou P, Ziv E, Burchard EG et al. (2007) PCA-correlated SNPs for structure identification in worldwide human populations. PLoS Genetics, 3, 1672-1686.
-
(2007)
PLoS Genetics
, vol.3
, pp. 1672-1686
-
-
Paschou, P.1
Ziv, E.2
Burchard, E.G.3
-
27
-
-
77649215261
-
The scale of population structure in Arabidopsis thaliana
-
Platt A, Horton M, Huang YS, Li Y, Anastasio AE et al. (2010) The scale of population structure in Arabidopsis thaliana. PLoS Genetics, 6, e1000843.
-
(2010)
PLoS Genetics
, vol.6
-
-
Platt, A.1
Horton, M.2
Huang, Y.S.3
Li, Y.4
Anastasio, A.E.5
-
28
-
-
34548263230
-
Ascertainment bias in spatially structured populations: a case study in the eastern fence lizard
-
Rosenblum EB, Novembre J (2007) Ascertainment bias in spatially structured populations: a case study in the eastern fence lizard. Journal of Heredity, 98, 331-336.
-
(2007)
Journal of Heredity
, vol.98
, pp. 331-336
-
-
Rosenblum, E.B.1
Novembre, J.2
-
29
-
-
0033990048
-
Primer3 on the www for general users and for biologist programmers
-
Rozen S, Skaletsky H (2000) Primer3 on the www for general users and for biologist programmers. Methods in Molecular Biology, 132, 365-386.
-
(2000)
Methods in Molecular Biology
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
30
-
-
84855224530
-
RAD tag sequencing as a source of SNP markers in Cynara cardunculus L
-
Scaglione D, Acquadro A, Portis E et al. (2012) RAD tag sequencing as a source of SNP markers in Cynara cardunculus L. BMC Genomics, 13, 1-11.
-
(2012)
BMC Genomics
, vol.13
, pp. 1-11
-
-
Scaglione, D.1
Acquadro, A.2
Portis, E.3
-
31
-
-
40149098690
-
SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries
-
Van Tassell CP, Smith TP, Matukumalli LK et al. (2008) SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nature Methods, 5, 247-252.
-
(2008)
Nature Methods
, vol.5
, pp. 247-252
-
-
Van Tassell, C.P.1
Smith, T.P.2
Matukumalli, L.K.3
-
32
-
-
79961188129
-
Paired-end RAD-seq for de-novo assembly and marker design without available reference
-
Willing EM, Hoffmann M, Klein JD, Weigel D, Dreyer C (2011) Paired-end RAD-seq for de-novo assembly and marker design without available reference. Bioinformatics, 27, 2187-2193.
-
(2011)
Bioinformatics
, vol.27
, pp. 2187-2193
-
-
Willing, E.M.1
Hoffmann, M.2
Klein, J.D.3
Weigel, D.4
Dreyer, C.5
-
33
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18, 821-829.
-
(2008)
Genome Research
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
|